Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0142900 | OGI:12005750 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:2094887-2097950 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGTGGTGGAGGAATTATTGGAAGCTCTAACTGTTAATTCAGAAGCTGACCCTGATTCCAGTCCTGAAGATAGTGAGATCCAACAGCAGGGAGTCTTACTGGCCATTTCACAGCAAGCAGTTTGGGGAACTGAGTCCACAAGATCTATCAAACTCAGGGGTTGGGTTCAGGATATGGAATTACTAATGTTGGTGGACTCTGGTAGCACACACTCATTTATTGATAAGGAAGTAGGTCTGAAGTTATCAGGAATTCAGAAACTAAAACAACCTCTCATTGTTAGGATTGCTGATGGAGGAACTATGAGTTGCACACATGAAATTACTAACTGCAAATGGTGGATGCAGGGGTATCAGTTCTGCAACAATTTCAGAATGTTGCCCTTGGGAAACTATGATATCATCCTTGGAATGGATTGGCTTGAATCTATCAGCCCTATGCAGGTTGATTGGGCAAACAAGTGGATGGAATTCAATCATCAAGGTGCCAGCATCAGGGTACAAGGACTGCTGTCCACTCCTGTGCAATGTTCACCTGTTACATGCCATCAATTGAATGGAATGAGTAGAAGGGGATCACTCAGTTACCTGGTTCAACTGCAGCCTATAACTAGACAGGAAGATATTAACATTCCAGACCAGGTACAACACATTATTCAGGATTATAAGGAGATTTTTCAGGAACCTGAGGGATTACCACCAAGGAGAACATGTGACCATATAATTACCCTTGTCCCAGGAGCTAAACCAATCAACCTCAGACCCTATAGACACAACCCAGCTCTCAAGGATGAAATTGAGAAGCAGATTTCTGACATGCTCAGTTCTGGTGTCATACAGCATAGCCAAAGTCCCTTTGCTTCTCCTGCAATACTTGTCAAAAAGAAAAATGGCACATGGAGGTTAGTCATTGATTACAGGCAGCTCAATGCCATAACTGTGAAAACCAAATATCCTGTTCCTGTGATAGAGGAATTACTTGACGAACTCACTGGTGCTCAGTGGTTTACCAAACTAGATCTCTGGTCTGGGTACCACCAAATCAGGATGGCGGCCGGAGAAGAGTACAAAACTGCTTTTCAGACTCACTCAGGACACTATGAGTATAAGGTGATGTCCTTTGGATTGACTGGGGCTCCAGCCACATTTCTCAAAGCTATGAATGACACTCTGAAGTCAGTACTCAGGAAGTTTGTCTTGGTGTTCTTTGATGATATTCTCATCTACAGTAAAGATTTTTCTAGCCACCTGGATCACATCAGACAAGTGCTGCAACTTCTGAAGGAACATCAGTGGAGAGTTAAAATCAGTAAATGTTCATTTGCACAACAGCAGCTATCTTACCTTGGCCATATTATAGGAGTACATGGTGTTTCCACTGATCCCTCTAAAATACAGGATGTATTAGATTGGGCTGTACCTGTGTCAGTTAAGAAATTGAGGGGTTTTCTGGGATTGGCAGGCTATTACAGAAAGTTTGTAAAGAACTTTGGAATCATTAGTAAACCTCTCACACAGATGCTGAGGAAGGGAATCCCATATGTCTGGTCACATGAAGCTGACAAGGCTTTCAACACCCTCAAACAAGCATTAGCCTCAGCTCCAGTTTTTGCCCTTCCAGATTTTCAGAAAACTTTCACAGTGGAGACTGATGCCAGTGAATGTGGGATAGGAGCTGTATTATCTCAAGATAAGCATCCTATAGCTTACATTAGCAGAGCCCTAGGGCCCAGAACTATTGGACTTTCTACATATGAAAAGGAATGTATGGCTATTTTATTGGCAATTGATCATTGGCGATCTTATTTACAGCATGAACAAGCCATATGGGAGGATCTGGAAGATTTGAAGATGCGTTTCCCTGGAGCCTTGGCTTGGGGACAAGCCAAATTTCATGGGGAGGGGATTGTCAGGAACCTGCCTGTCACTATGGGTACTGAAGAAGGAGAACCTGATGAAGCAGAAGCTGAACAGGGAGAGAAGGAACCTGAAGAAGGAGAACCTGATGAAGCAGAAGCTGAAGTCCAGGAGGAGGAGATACAGACTACTACTCCAGGAAGAGCAAGACCCACAAGAGGGCCAAAGCCCAATCCTCGTTACCATGGGTCCGAGTGGGTTGCGTAGCCCAGCTATCTGTTGTACAGCTGGCTACTGTGTGTGTCGTGTGAGTAGGGAGATGCTACTGTATAAATAAGATGAACTCGAGGAAGACAACTATGATTTGGCATCTCGGTGGCGGTGGCGGCGGAAGGCTCAATCCTGTTGGGTTGGAGCAGATCAATCCAAACTAGTTGCCTGAATCCTTGTGTGTTCTTGTTTCTCTTGTTGATTTCTTGAGATCCTGACAATCTACTACTCCATCCATGGCAGTGCCAGTGCCACGGGGCTGGCGCTGGATATGATCGTGAAGCTGTTGGAAGAAGGCTCTGTCCAATCGTATCACCCCCTCACTGATGGCCTCCCTCACGTCCTCGCGAGTGCTCTCGTGAACTTCTGCGAGCGTTAATGGCGGCGTACTTCTTGGACGAAACATGATGCTGGAGTAGCTACGGCTGCCAACCGTCCAGCTATTATGGAAGAAGCCGTGACGATCGACGTAGCTCTCGATGGGAGGGAAATCCCTTGGTAGCCCTCTTGCGACCGCAGCGGCCTCCTCCATCTGCAGCAGCAACACGCCGCCCTCCCTGCACAAGAGATCGACAAGGGCGGAACGCCGCAGCGGTTGAGTTGGGGGGAATGGATCAGGAGATAAACGCGCCCCTACCTGCAGACTTTATAGATGAAGAAACCGATCGGACTCCGCGTCCCGGCCGATCGGAATCGAGAGAGAATCCGACTCGGATCCACCCCAAATCCCCAATCACACGGATTTACTGGAGTTCTATGGAAAACGGAAAACGGAGCAATGGATTAATGCGGAAAGCCACTGCAAATCGGACGTCCGAATTATGAGAAAAAATCGGACGGCCACTCCTCGGCACGCATCATGCATCCCCAACATGCACCATGTACGTATCACTTTTTATCTATCAGCCTTCATATACACGCATTATTTCTCTCTCATTT
More
|
||||||||||
| CDS seq | GTGGTGGAGGAATTATTGGAAGCTCTAACTGTTAATTCAGAAGCTGACCCTGATTCCAGTCCTGAAGATAGTGAGATCCAACAGCAGGGAGTCTTACTGGCCATTTCACAGCAAGCAGTTTGGGGAACTGAGTCCACAAGATCTATCAAACTCAGGGGTTGGGTTCAGGATATGGAATTACTAATGTTGGTGGACTCTGGTAGCACACACTCATTTATTGATAAGGAAGTAGGTCTGAAGTTATCAGGAATTCAGAAACTAAAACAACCTCTCATTGTTAGGATTGCTGATGGAGGAACTATGAGTTGCACACATGAAATTACTAACTGCAAATGGTGGATGCAGGGGTATCAGTTCTGCAACAATTTCAGAATGTTGCCCTTGGGAAACTATGATATCATCCTTGGAATGGATTGGCTTGAATCTATCAGCCCTATGCAGGTTGATTGGGCAAACAAGTGGATGGAATTCAATCATCAAGGTGCCAGCATCAGGGTACAAGGACTGCTGTCCACTCCTGTGCAATGTTCACCTGTTACATGCCATCAATTGAATGGAATGAGTAGAAGGGGATCACTCAGTTACCTGGTTCAACTGCAGCCTATAACTAGACAGGAAGATATTAACATTCCAGACCAGGTACAACACATTATTCAGGATTATAAGGAGATTTTTCAGGAACCTGAGGGATTACCACCAAGGAGAACATGTGACCATATAATTACCCTTGTCCCAGGAGCTAAACCAATCAACCTCAGACCCTATAGACACAACCCAGCTCTCAAGGATGAAATTGAGAAGCAGATTTCTGACATGCTCAGTTCTGGTGTCATACAGCATAGCCAAAGTCCCTTTGCTTCTCCTGCAATACTTGTCAAAAAGAAAAATGGCACATGGAGGTTAGTCATTGATTACAGGCAGCTCAATGCCATAACTGTGAAAACCAAATATCCTGTTCCTGTGATAGAGGAATTACTTGACGAACTCACTGGTGCTCAGTGGTTTACCAAACTAGATCTCTGGTCTGGGTACCACCAAATCAGGATGGCGGCCGGAGAAGAGTACAAAACTGCTTTTCAGACTCACTCAGGACACTATGAGTATAAGGTGATGTCCTTTGGATTGACTGGGGCTCCAGCCACATTTCTCAAAGCTATGAATGACACTCTGAAGTCAGTACTCAGGAAGTTTGTCTTGGTGTTCTTTGATGATATTCTCATCTACAGTAAAGATTTTTCTAGCCACCTGGATCACATCAGACAAGTGCTGCAACTTCTGAAGGAACATCAGTGGAGAGTTAAAATCAGTAAATGTTCATTTGCACAACAGCAGCTATCTTACCTTGGCCATATTATAGGAGTACATGGTGTTTCCACTGATCCCTCTAAAATACAGGATGTATTAGATTGGGCTGTACCTGTGTCAGTTAAGAAATTGAGGGGTTTTCTGGGATTGGCAGGCTATTACAGAAAGTTTGTAAAGAACTTTGGAATCATTAGTAAACCTCTCACACAGATGCTGAGGAAGGGAATCCCATATGTCTGGTCACATGAAGCTGACAAGGCTTTCAACACCCTCAAACAAGCATTAGCCTCAGCTCCAGTTTTTGCCCTTCCAGATTTTCAGAAAACTTTCACAGTGGAGACTGATGCCAGTGAATGTGGGATAGGAGCTGTATTATCTCAAGATAAGCATCCTATAGCTTACATTAGCAGAGCCCTAGGGCCCAGAACTATTGGACTTTCTACATATGAAAAGGAATGTATGGCTATTTTATTGGCAATTGATCATTGGCGATCTTATTTACAGCATGAACAAGCCATATGGGAGGATCTGGAAGATTTGAAGATGCGTTTCCCTGGAGCCTTGGCTTGGGGACAAGCCAAATTTCATGGGGAGGGGATTGTCAGGAACCTGCCTGTCACTATGGGTACTGAAGAAGGAGAACCTGATGAAGCAGAAGCTGAACAGGGAGAGAAGGAACCTGAAGAAGGAGAACCTGATGAAGCAGAAGCTGAAGTCCAGGAGGAGGAGATACAGACTACTACTCCAGGAAGAGCAAGACCCACAAGAGGGCCAAAGCCCAATCCTCGTTACCATGGGTCCGAGTGGGTTGCGTAG
More
|
||||||||||
| Protein seq | VVEELLEALTVNSEADPDSSPEDSEIQQQGVLLAISQQAVWGTESTRSIKLRGWVQDMELLMLVDSGSTHSFIDKEVGLKLSGIQKLKQPLIVRIADGGTMSCTHEITNCKWWMQGYQFCNNFRMLPLGNYDIILGMDWLESISPMQVDWANKWMEFNHQGASIRVQGLLSTPVQCSPVTCHQLNGMSRRGSLSYLVQLQPITRQEDINIPDQVQHIIQDYKEIFQEPEGLPPRRTCDHIITLVPGAKPINLRPYRHNPALKDEIEKQISDMLSSGVIQHSQSPFASPAILVKKKNGTWRLVIDYRQLNAITVKTKYPVPVIEELLDELTGAQWFTKLDLWSGYHQIRMAAGEEYKTAFQTHSGHYEYKVMSFGLTGAPATFLKAMNDTLKSVLRKFVLVFFDDILIYSKDFSSHLDHIRQVLQLLKEHQWRVKISKCSFAQQQLSYLGHIIGVHGVSTDPSKIQDVLDWAVPVSVKKLRGFLGLAGYYRKFVKNFGIISKPLTQMLRKGIPYVWSHEADKAFNTLKQALASAPVFALPDFQKTFTVETDASECGIGAVLSQDKHPIAYISRALGPRTIGLSTYEKECMAILLAIDHWRSYLQHEQAIWEDLEDLKMRFPGALAWGQAKFHGEGIVRNLPVTMGTEEGEPDEAEAEQGEKEPEEGEPDEAEAEVQEEEIQTTTPGRARPTRGPKPNPRYHGSEWVA |
||||||||||
| Function | Retrovirus-related Pol polyprotein from transposon 17.6 [UniProtKB/Swiss-Prot:P04323] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0142900 | Os12t0142900-02 | Chr12 | 2094887 | 2097950 | + | irgsp1_rep | ||
| CDS seq | GTGGTGGAGGAATTATTGGAAGCTCTAACTGTTAATTCAGAAGCTGACCCTGATTCCAGTCCTGAAGATAGTGAGATCCAACAGCAGGGAGTCTTACTGGCCATTTCACAGCAAGCAGTTTGGGGAACTGAGTCCACAAGATCTATCAAACTCAGGGGTTGGGTTCAGGATATGGAATTACTAATGTTGGTGGACTCTGGTAGCACACACTCATTTATTGATAAGGAAGTAGGTCTGAAGTTATCAGGAATTCAGAAACTAAAACAACCTCTCATTGTTAGGATTGCTGATGGAGGAACTATGAGTTGCACACATGAAATTACTAACTGCAAATGGTGGATGCAGGGGTATCAGTTCTGCAACAATTTCAGAATGTTGCCCTTGGGAAACTATGATATCATCCTTGGAATGGATTGGCTTGAATCTATCAGCCCTATGCAGGTTGATTGGGCAAACAAGTGGATGGAATTCAATCATCAAGGTGCCAGCATCAGGGTACAAGGACTGCTGTCCACTCCTGTGCAATGTTCACCTGTTACATGCCATCAATTGAATGGAATGAGTAGAAGGGGATCACTCAGTTACCTGGTTCAACTGCAGCCTATAACTAGACAGGAAGATATTAACATTCCAGACCAGGTACAACACATTATTCAGGATTATAAGGAGATTTTTCAGGAACCTGAGGGATTACCACCAAGGAGAACATGTGACCATATAATTACCCTTGTCCCAGGAGCTAAACCAATCAACCTCAGACCCTATAGACACAACCCAGCTCTCAAGGATGAAATTGAGAAGCAGATTTCTGACATGCTCAGTTCTGGTGTCATACAGCATAGCCAAAGTCCCTTTGCTTCTCCTGCAATACTTGTCAAAAAGAAAAATGGCACATGGAGGTTAGTCATTGATTACAGGCAGCTCAATGCCATAACTGTGAAAACCAAATATCCTGTTCCTGTGATAGAGGAATTACTTGACGAACTCACTGGTGCTCAGTGGTTTACCAAACTAGATCTCTGGTCTGGGTACCACCAAATCAGGATGGCGGCCGGAGAAGAGTACAAAACTGCTTTTCAGACTCACTCAGGACACTATGAGTATAAGGTGATGTCCTTTGGATTGACTGGGGCTCCAGCCACATTTCTCAAAGCTATGAATGACACTCTGAAGTCAGTACTCAGGAAGTTTGTCTTGGTGTTCTTTGATGATATTCTCATCTACAGTAAAGATTTTTCTAGCCACCTGGATCACATCAGACAAGTGCTGCAACTTCTGAAGGAACATCAGTGGAGAGTTAAAATCAGTAAATGTTCATTTGCACAACAGCAGCTATCTTACCTTGGCCATATTATAGGAGTACATGGTGTTTCCACTGATCCCTCTAAAATACAGGATGTATTAGATTGGGCTGTACCTGTGTCAGTTAAGAAATTGAGGGGTTTTCTGGGATTGGCAGGCTATTACAGAAAGTTTGTAAAGAACTTTGGAATCATTAGTAAACCTCTCACACAGATGCTGAGGAAGGGAATCCCATATGTCTGGTCACATGAAGCTGACAAGGCTTTCAACACCCTCAAACAAGCATTAGCCTCAGCTCCAGTTTTTGCCCTTCCAGATTTTCAGAAAACTTTCACAGTGGAGACTGATGCCAGTGAATGTGGGATAGGAGCTGTATTATCTCAAGATAAGCATCCTATAGCTTACATTAGCAGAGCCCTAGGGCCCAGAACTATTGGACTTTCTACATATGAAAAGGAATGTATGGCTATTTTATTGGCAATTGATCATTGGCGATCTTATTTACAGCATGAACAAGCCATATGGGAGGATCTGGAAGATTTGAAGATGCGTTTCCCTGGAGCCTTGGCTTGGGGACAAGCCAAATTTCATGGGGAGGGGATTGTCAGGAACCTGCCTGTCACTATGGGTACTGAAGAAGGAGAACCTGATGAAGCAGAAGCTGAACAGGGAGAGAAGGAACCTGAAGAAGGAGAACCTGATGAAGCAGAAGCTGAAGTCCAGGAGGAGGAGATACAGACTACTACTCCAGGAAGAGCAAGACCCACAAGAGGGCCAAAGCCCAATCCTCGTTACCATGGGTCCGAGTGGGTTGCGTAG
More
|
|||||||
| Protein seq | VVEELLEALTVNSEADPDSSPEDSEIQQQGVLLAISQQAVWGTESTRSIKLRGWVQDMELLMLVDSGSTHSFIDKEVGLKLSGIQKLKQPLIVRIADGGTMSCTHEITNCKWWMQGYQFCNNFRMLPLGNYDIILGMDWLESISPMQVDWANKWMEFNHQGASIRVQGLLSTPVQCSPVTCHQLNGMSRRGSLSYLVQLQPITRQEDINIPDQVQHIIQDYKEIFQEPEGLPPRRTCDHIITLVPGAKPINLRPYRHNPALKDEIEKQISDMLSSGVIQHSQSPFASPAILVKKKNGTWRLVIDYRQLNAITVKTKYPVPVIEELLDELTGAQWFTKLDLWSGYHQIRMAAGEEYKTAFQTHSGHYEYKVMSFGLTGAPATFLKAMNDTLKSVLRKFVLVFFDDILIYSKDFSSHLDHIRQVLQLLKEHQWRVKISKCSFAQQQLSYLGHIIGVHGVSTDPSKIQDVLDWAVPVSVKKLRGFLGLAGYYRKFVKNFGIISKPLTQMLRKGIPYVWSHEADKAFNTLKQALASAPVFALPDFQKTFTVETDASECGIGAVLSQDKHPIAYISRALGPRTIGLSTYEKECMAILLAIDHWRSYLQHEQAIWEDLEDLKMRFPGALAWGQAKFHGEGIVRNLPVTMGTEEGEPDEAEAEQGEKEPEEGEPDEAEAEVQEEEIQTTTPGRARPTRGPKPNPRYHGSEWVA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0142900 | RBH | 1.036543 | 0.471081 | 1.285871 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04880 | RBH | 1.645183 | 0.743576 | 0.983226 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0037100 | RBH | 0 | 0.0209455 | 0.019105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0039700 | RBH | 0 | 0 | 0.007581 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
