Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_10G0026100 | OGI:10005090 | 7/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr10:1587555-1590148 | ||||||||
| Gene Symbol | LRR-RLK2, OsLRR-RLK2 | ||||||||||
| DNA seq | ATGAATGTAATAGATTGTAAGTGGGTCTATAAGATTAAAAGAAAGGCAGATGGAACTATAGATAGATATAAAGCTAGGTTAGTAGCAAAGGGTTTTAAACAACATTATGGTATTGATTATGAGGATACCTTCAGTCCTGTAGTTAAGGCTGCTACTATTAGACTTGTTCAGTCACTGGCTGTGTCACAGGGATGGAGTCTTCGACAGCTTGATGTACAGAATGCCTTCTTGCATGGCTATCTTGAAGAAGATGTGTACATGAGGCAGCCACCAGGATACGAGGAGAAAAAGATGCCACACTATCTCTGTAAGTTGGATAAGGCTCTGTATGGCTTAAAACAGGCACCTAGAGCTTGGTACTCCAGGTTGAGAAAAAGGCTACAAGAACTTGGTTTTGTTTCATCTAAGGCTGATACATCTTTGTTCTTCTATAATAAGAAGGGACTTGTTATGTTTCTGCTTGTATATGTTGATGATATTATAGTTGCTAGCTCTTCTGGTCAAGCAGTTACAGTTTTACTCAAGGAACTTGAGAAAGATTTTGCTCTGAAAGATCTTGGGGATCTGCACTACTTTCTGGGAATTGAAGTAAAGAAAACTGAGAAAGGTCTGCTGTTGACACAGGAAAGGTATGCAGGTGATATTATTAAGAGAACTGGAATGAGTAATTGTAAGCCTGTGAGTACTCCTCTCTGTGTGTTTGAAAAACTGTGGTTAAATGATGGTGAATTTTTGGGTGCAAATGATGCCAGTCAGTACAGGAGTATCGTTGGGGCTCTACAGTACTTAACTCTTACAAGACCAGACATATCTTTCTCAGTTAATAAAGTGTGTCAGTTCTTACAAAATCCTACTATTGTACATTGGGCAGCAGTAAAGAGAATACTTAGATATCTGCAAGGTACTCTTGGTCTAGGATTAAAGATTGACAAATCCTTTTCTTATATTGTTAGTGCTTTCTCTGATGCAGACTGGGCAGGATGTCTAGATGACAGGAGATCTACTGGAGGTTTTGCAGTATTTCTGGGATCAAATTTGATATCCTGGAGTGCCAGGAAGCAAGCTACTGTATCACGCTCTAGTACTGAAGCCGAATATAAAGCCTTGGCTAATGCAACTGCTGAGGTAATGTGGGTTCGTAAATTGCTAGAAGAGATTGGTTTGTTGCATCCAGGACCTTCTCAATTATGGTGTGATAATATTGGAGCTACCTATTTGTCAGCAAATCCTGTGTTTCATGCTAGAACAAAACACATAGAAGTGGATTACCATTTTGTCAGAGAACAGGTGGCGCAGAAAATGTTGGAAATTCGGTTTGTTCCGTCACAAGATCAAATTGCTGATGGATTTACAAAGCCTCTTCCTGTGAGACAATTACAATTGTTCTGTAACAATCTCAATCTTGGAGAGTTGAGATTGAGGGGGAGTGTTAGATGATAAGAATAGTTAGCTAGATAGATTGGTTCTTATCTTCAGTTTGTTGTAACTAACAGAGAGATAGGATAAGATCTCTCATCCTTTGTATGTACCACGCTAGGGGTTATTCCTAGCCTATATAACACGCAGGCGTACCTGGAGGAAGGGTATCGCTTCCATCACACCCCAAAACTGTTAAGAGTAGCTGAAGACATTGCCACTGCATTGGACTATCTTCATAACCGATTCCTCCCTTGGTTCACTGCGATCTGAAACCAAGCAATATCCTTTTGAATGATGAATCCTTTAGTGACTTTGGACTTGCAAAGTTTCTTCAGAACAACATTATAAGCCTGGGTGATGCATCAAGCACTACCAGACTGAGAGGGTCAATCGGATACATTGCACCAGGTGATCACCTGCTTCATTCTTATTTTGTCCATTTCTATTGTCTCCATTTTATCTTTCACGGAAGTGATGCAAAACTGTATCATATTTTGACTGACTAAGAAAGATTATCAACTTGCATAATTAATATTGATCGTAGAGTATGGCTTGGGGTGCAAAATTTCAATAGAGGATGATGTATATAGTTATGGAATTATTGTTCCAGAGATAATCATAGGAAAGCGCCCTAACTTCACAGCTTTGTGGAGTCAGCATATTTCCACATCAAATCAATGAAATTTTAGAGCCCCTACTCTCACCTATTATCATGAAGGTGAAGACCCAAATCATGCTGTGGTTGAAATGCAAACATCCATAGAATTGGATAAGCTTGGGCTAAAGTGCACAGAGCCATCACCAAAGGATCGTTCAACAATGTGCGATGTTTACGCTGAGATCATTTTTACATCAAAGAGAAATATTATGCACTCATCAACTGGGGAAATGGATGGATACTGCTGAAGTTCACCTGCTGAAGCTAGTAAAATAAATTGTGATGTGCTGTGCTCATCTTTCTCTTGGATTCGAAATAAATTGTGATGAATTTGTAATTACATTGGTCTGAACCAAACTGCAAGCGGCCGGGAAGCACGCCTATCCAGAGAATCAGTTTTGATAACTAATTAAGATTTAAATTAACTAACTTTTGTTTGCAGGAAGATGACACAATCGTTGACAACGAATTGAAGATGAACCAGATTGCCACCATGAGAATCCCTGCACTGCAGTAG
More
|
||||||||||
| CDS seq | ATGAATGTAATAGATTGTAAGTGGGTCTATAAGATTAAAAGAAAGGCAGATGGAACTATAGATAGATATAAAGCTAGGTTAGTAGCAAAGGGTTTTAAACAACATTATGGTATTGATTATGAGGATACCTTCAGTCCTGTAGTTAAGGCTGCTACTATTAGACTTGTTCAGTCACTGGCTGTGTCACAGGGATGGAGTCTTCGACAGCTTGATGTACAGAATGCCTTCTTGCATGGCTATCTTGAAGAAGATGTGTACATGAGGCAGCCACCAGGATACGAGGAGAAAAAGATGCCACACTATCTCTGTAAGTTGGATAAGGCTCTGTATGGCTTAAAACAGGCACCTAGAGCTTGGTACTCCAGGTTGAGAAAAAGGCTACAAGAACTTGGTTTTGTTTCATCTAAGGCTGATACATCTTTGTTCTTCTATAATAAGAAGGGACTTGTTATGTTTCTGCTTGTATATGTTGATGATATTATAGTTGCTAGCTCTTCTGGTCAAGCAGTTACAGTTTTACTCAAGGAACTTGAGAAAGATTTTGCTCTGAAAGATCTTGGGGATCTGCACTACTTTCTGGGAATTGAAGTAAAGAAAACTGAGAAAGGTCTGCTGTTGACACAGGAAAGTCAGTACAGGAGTATCGTTGGGGCTCTACAGTACTTAACTCTTACAAGACCAGACATATCTTTCTCAGTTAATAAAGTGTGTCAGTTCTTACAAAATCCTACTATTGTACATTGGGCAGCAGTAAAGAGAATACTTAGATATCTGCAAGACTGGGCAGGATGTCTAGATGACAGGAGATCTACTGGAGGTTTTGCAGTATTTCTGGGATCAAATTTGATATCCTGGAGTGCCAGGAAGCAAGCTACTGTATCACGCTCTAGTACTGAAGCCGAATATAAAGCCTTGGCTAATGCAACTGCTGAGGAAGATGACACAATCGTTGACAACGAATTGAAGATGAACCAGATTGCCACCATGAGAATCCCTGCACTGCAGTAG
More
|
||||||||||
| Protein seq | MNVIDCKWVYKIKRKADGTIDRYKARLVAKGFKQHYGIDYEDTFSPVVKAATIRLVQSLAVSQGWSLRQLDVQNAFLHGYLEEDVYMRQPPGYEEKKMPHYLCKLDKALYGLKQAPRAWYSRLRKRLQELGFVSSKADTSLFFYNKKGLVMFLLVYVDDIIVASSSGQAVTVLLKELEKDFALKDLGDLHYFLGIEVKKTEKGLLLTQESQYRSIVGALQYLTLTRPDISFSVNKVCQFLQNPTIVHWAAVKRILRYLQDWAGCLDDRRSTGGFAVFLGSNLISWSARKQATVSRSSTEAEYKALANATAEEDDTIVDNELKMNQIATMRIPALQ |
||||||||||
| Function | Retrovirus-related Pol polyprotein from transposon RE1 [UniProtKB/Swiss-Prot:Q94HW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_10G0026100 | OsZS97_10T0026100.1 | Chr10 | 1587555 | 1590148 | + | makerRMon | ||
| CDS seq | ATGAATGTAATAGATTGTAAGTGGGTCTATAAGATTAAAAGAAAGGCAGATGGAACTATAGATAGATATAAAGCTAGGTTAGTAGCAAAGGGTTTTAAACAACATTATGGTATTGATTATGAGGATACCTTCAGTCCTGTAGTTAAGGCTGCTACTATTAGACTTGTTCAGTCACTGGCTGTGTCACAGGGATGGAGTCTTCGACAGCTTGATGTACAGAATGCCTTCTTGCATGGCTATCTTGAAGAAGATGTGTACATGAGGCAGCCACCAGGATACGAGGAGAAAAAGATGCCACACTATCTCTGTAAGTTGGATAAGGCTCTGTATGGCTTAAAACAGGCACCTAGAGCTTGGTACTCCAGGTTGAGAAAAAGGCTACAAGAACTTGGTTTTGTTTCATCTAAGGCTGATACATCTTTGTTCTTCTATAATAAGAAGGGACTTGTTATGTTTCTGCTTGTATATGTTGATGATATTATAGTTGCTAGCTCTTCTGGTCAAGCAGTTACAGTTTTACTCAAGGAACTTGAGAAAGATTTTGCTCTGAAAGATCTTGGGGATCTGCACTACTTTCTGGGAATTGAAGTAAAGAAAACTGAGAAAGGTCTGCTGTTGACACAGGAAAGTCAGTACAGGAGTATCGTTGGGGCTCTACAGTACTTAACTCTTACAAGACCAGACATATCTTTCTCAGTTAATAAAGTGTGTCAGTTCTTACAAAATCCTACTATTGTACATTGGGCAGCAGTAAAGAGAATACTTAGATATCTGCAAGACTGGGCAGGATGTCTAGATGACAGGAGATCTACTGGAGGTTTTGCAGTATTTCTGGGATCAAATTTGATATCCTGGAGTGCCAGGAAGCAAGCTACTGTATCACGCTCTAGTACTGAAGCCGAATATAAAGCCTTGGCTAATGCAACTGCTGAGGAAGATGACACAATCGTTGACAACGAATTGAAGATGAACCAGATTGCCACCATGAGAATCCCTGCACTGCAGTAG
More
|
|||||||
| Protein seq | MNVIDCKWVYKIKRKADGTIDRYKARLVAKGFKQHYGIDYEDTFSPVVKAATIRLVQSLAVSQGWSLRQLDVQNAFLHGYLEEDVYMRQPPGYEEKKMPHYLCKLDKALYGLKQAPRAWYSRLRKRLQELGFVSSKADTSLFFYNKKGLVMFLLVYVDDIIVASSSGQAVTVLLKELEKDFALKDLGDLHYFLGIEVKKTEKGLLLTQESQYRSIVGALQYLTLTRPDISFSVNKVCQFLQNPTIVHWAAVKRILRYLQDWAGCLDDRRSTGGFAVFLGSNLISWSARKQATVSRSSTEAEYKALANATAEEDDTIVDNELKMNQIATMRIPALQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g02700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000930 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0024300 | RBH | 1.1083815 | 0.937466 | 0.301516 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0164600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000900 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000810 | RBH | 0.0 | 0.0 | 0.000000 |
