Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_09G0092400 | OGI:09016760 | 11/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr09:5410553-5412223 | ||||||||
| Gene Symbol | RPS2, OsRPS2 | ||||||||||
| DNA seq | TTATGACACGATTTTAAGAAGGGGCTCCAGCATTGGTCTGATACCTTCTTCTTCCCATTCAAGATTATCCCACCATTCAACACTATCGGAGTATATAACCTGCAACTTGGGTGGCAAGCTCTGCTGCCGAAAAGGAAGCCTCTTAAGATTTTCACAATTTGTGACCCTCAGGCTCTTTAGGGATGGGAATGTCACATCTGAATCACATATGCTGACCAACCCATCGTTATTTGCAAATAGCATAGAAACGAGGCGCGGGAATGTATCAATCGATTGCATTGAGCTCTCTTGCTTTGATATGTTCCGAATGGCATGTCTCATCTTGCCACAACCTTGCACCCATAGTTCTTCCAGAAAAGGTAAATGCAGCGCCCACGAGATATCTTCCAGCTGGTCGCAGTCAATGGTATACAGAACGGTGAGCCTATGGAAAAGCAATTCTGGACGTATTCCTTTCCACGTAATAACTTTCAGGTTTTCCAAAAATTGTAAGTCCAGCTGATTCAGAGCATCAAAACTATAGTTTTGTTCCAAATGGCCACCACTCTCGTGTCTCTCTATTATTATTTCCTCCATGCTGCTGCGATAAATTTCCAACTTATGTAAGGTCATTTGAGCCAAGTGATCTGACAAAGGACCAGTCAGTAGATAGAACACTGACTCTCGTTCCTCTATATTTAGAACAAGTCTCCTAATAGGTAGGTTAGGATATTCCTTAAGTGCTTCATAACTAGAAACACTTTCAACAGTAATGCCAACTGCTTTTAACTTACTTAGTTTGGTTAACTCTTGGATTAGTACTACTGAAGGCATATGATCCGCGTGGTTTTCTCTGTTACCGTACCGATTCCAAGGTTTGGGTTTTGGCGTCAAGTCTATGACCTGCAGTGCTTTAAGGCTAGATATGACATCCTCTGGAATTCTCCATACGTTAGTGCATGACAGATACAAGAATTTGAGCTTACTGAGTTCTCTAAAGCAGGTGGGGACTTCGCATATTCCTGAATTATATCCCAAATCGAGATACTCCAAATTGGCCAAGGCACATATCTCCGCTGGTATGTTAGTGAGGGAATTCGAGCATAAATCCAGATATGTGAGTGCAGTGAAATTCTTAAGAGTTTCAACTATCCTTCCATCCAAACGATTGCCTTGAAGACATAATGTCCTGAGTTTTGCGGGAAAATAATTTGAATCCATGGGAGGCAATTCTTCAATGCGATTCCACATCAAGGAGACGCATTCAGCTTTGCTCCATGGGATGGTTCTTCTTGATAAATTTTTGCCAACTTGTGCATGGACAACCCAGTTGTCGTTCTTTTCACTGCAACCGCAACAGATCCATAGAGCCATGTCACGAACCACATCATGCATTGTGATTACACGAGAAGTATGCCAGCTCTCCAACAAACAGGCAGATTGAAGTTCACTTCTTACGTTACATGCTTCTCTGTAGGAACTTTGTATATCATCCTTGTCCACCAGACCTAAGCCCATCCAACATTGGTCGAGTTCATCTGTAGCTATGAACACATCCTCTGGCCACAATGCACAAGTCAAGAAACAACGTTTCAGGGTGTCATTCCGTAAACTATCATAACTGAACTTAAGTTGCCTGAAAACAGTTTCCATAGAGAGGGGACCGTCCTTATCACGACAAGCCCCTTTCAT
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| CDS seq | ATGAAAGGGGCTTGTCGTGATAAGGACGGTCCCCTCTCTATGGAAACTGTTTTCAGGCAACTTAAGTTCAGTTATGATAGTTTACGGAATGACACCCTGAAACGTTGTTTCTTGACTTGTGCATTGTGGCCAGAGGATGTGTTCATAGCTACAGATGAACTCGACCAATGTTGGATGGGCTTAGGTCTGGTGGACAAGGATGATATACAAAGTTCCTACAGAGAAGCATGTAACGTAAGAAGTGAACTTCAATCTGCCTGTTTGTTGGAGAGCTGGCATACTTCTCGTGTAATCACAATGCATGATGTGGTTCGTGACATGGCTCTATGGATCTGTTGCGGTTGCAGTGAAAAGAACGACAACTGGGTTGTCCATGCACAAGTTGGCAAAAATTTATCAAGAAGAACCATCCCATGGAGCAAAGCTGAATGCGTCTCCTTGATGTGGAATCGCATTGAAGAATTGCCTCCCATGGATTCAAATTATTTTCCCGCAAAACTCAGGACATTATGTCTTCAAGGCAATCGTTTGGATGGAAGGATAGTTGAAACTCTTAAGAATTTCACTGCACTCACATATCTGGATTTATGCTCGAATTCCCTCACTAACATACCAGCGGAGATATGTGCCTTGGCCAATTTGGAGTATCTCGATTTGGGATATAATTCAGGAATATGCGAAGTCCCCACCTGCTTTAGAGAACTCAGTAAGCTCAAATTCTTGTATCTGTCATGCACTAACGTATGGAGAATTCCAGAGGATGTCATATCTAGCCTTAAAGCACTGCAGGTCATAGACTTGACGCCAAAACCCAAACCTTGGAATCGGTACGGTAACAGAGAAAACCACGCGGATCATATGCCTTCAGTAGTACTAATCCAAGAGTTAACCAAACTAAGTAAGTTAAAAGCAGTTGGCATTACTGTTGAAAGTGTTTCTAGTTATGAAGCACTTAAGGAATATCCTAACCTACCTATTAGGAGACTTGTTCTAAATATAGAGGAACGAGAGTCAGTGTTCTATCTACTGACTGGTCCTTTGTCAGATCACTTGGCTCAAATGACCTTACATAAGTTGGAAATTTATCGCAGCAGCATGGAGGAAATAATAATAGAGAGACACGAGAGTGGTGGCCATTTGGAACAAAACTATAGTTTTGATGCTCTGAATCAGCTGGACTTACAATTTTTGGAAAACCTGAAAGTTATTACGTGGAAAGGAATACGTCCAGAATTGCTTTTCCATAGGCTCACCGTTCTGTATACCATTGACTGCGACCAGCTGGAAGATATCTCGTGGGCGCTGCATTTACCTTTTCTGGAAGAACTATGGGTGCAAGGTTGTGGCAAGATGAGACATGCCATTCGGAACATATCAAAGCAAGAGAGCTCAATGCAATCGATTGATACATTCCCGCGCCTCGTTTCTATGCTATTTGCAAATAACGATGGGTTGGTCAGCATATGTGATTCAGATGTGACATTCCCATCCCTAAAGAGCCTGAGGGTCACAAATTGTGAAAATCTTAAGAGGCTTCCTTTTCGGCAGCAGAGCTTGCCACCCAAGTTGCAGGTTATATACTCCGATAGTGTTGAATGGTGGGATAATCTTGAATGGGAAGAAGAAGGTATCAGACCAATGCTGGAGCCCCTTCTTAAAATCGTGTCATAA
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| Protein seq | MKGACRDKDGPLSMETVFRQLKFSYDSLRNDTLKRCFLTCALWPEDVFIATDELDQCWMGLGLVDKDDIQSSYREACNVRSELQSACLLESWHTSRVITMHDVVRDMALWICCGCSEKNDNWVVHAQVGKNLSRRTIPWSKAECVSLMWNRIEELPPMDSNYFPAKLRTLCLQGNRLDGRIVETLKNFTALTYLDLCSNSLTNIPAEICALANLEYLDLGYNSGICEVPTCFRELSKLKFLYLSCTNVWRIPEDVISSLKALQVIDLTPKPKPWNRYGNRENHADHMPSVVLIQELTKLSKLKAVGITVESVSSYEALKEYPNLPIRRLVLNIEERESVFYLLTGPLSDHLAQMTLHKLEIYRSSMEEIIIERHESGGHLEQNYSFDALNQLDLQFLENLKVITWKGIRPELLFHRLTVLYTIDCDQLEDISWALHLPFLEELWVQGCGKMRHAIRNISKQESSMQSIDTFPRLVSMLFANNDGLVSICDSDVTFPSLKSLRVTNCENLKRLPFRQQSLPPKLQVIYSDSVEWWDNLEWEEEGIRPMLEPLLKIVS |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_09G0092400 | OsZS97_09T0092400.1 | Chr09 | 5410553 | 5412223 | - | makerRMon | ||
| CDS seq | ATGAAAGGGGCTTGTCGTGATAAGGACGGTCCCCTCTCTATGGAAACTGTTTTCAGGCAACTTAAGTTCAGTTATGATAGTTTACGGAATGACACCCTGAAACGTTGTTTCTTGACTTGTGCATTGTGGCCAGAGGATGTGTTCATAGCTACAGATGAACTCGACCAATGTTGGATGGGCTTAGGTCTGGTGGACAAGGATGATATACAAAGTTCCTACAGAGAAGCATGTAACGTAAGAAGTGAACTTCAATCTGCCTGTTTGTTGGAGAGCTGGCATACTTCTCGTGTAATCACAATGCATGATGTGGTTCGTGACATGGCTCTATGGATCTGTTGCGGTTGCAGTGAAAAGAACGACAACTGGGTTGTCCATGCACAAGTTGGCAAAAATTTATCAAGAAGAACCATCCCATGGAGCAAAGCTGAATGCGTCTCCTTGATGTGGAATCGCATTGAAGAATTGCCTCCCATGGATTCAAATTATTTTCCCGCAAAACTCAGGACATTATGTCTTCAAGGCAATCGTTTGGATGGAAGGATAGTTGAAACTCTTAAGAATTTCACTGCACTCACATATCTGGATTTATGCTCGAATTCCCTCACTAACATACCAGCGGAGATATGTGCCTTGGCCAATTTGGAGTATCTCGATTTGGGATATAATTCAGGAATATGCGAAGTCCCCACCTGCTTTAGAGAACTCAGTAAGCTCAAATTCTTGTATCTGTCATGCACTAACGTATGGAGAATTCCAGAGGATGTCATATCTAGCCTTAAAGCACTGCAGGTCATAGACTTGACGCCAAAACCCAAACCTTGGAATCGGTACGGTAACAGAGAAAACCACGCGGATCATATGCCTTCAGTAGTACTAATCCAAGAGTTAACCAAACTAAGTAAGTTAAAAGCAGTTGGCATTACTGTTGAAAGTGTTTCTAGTTATGAAGCACTTAAGGAATATCCTAACCTACCTATTAGGAGACTTGTTCTAAATATAGAGGAACGAGAGTCAGTGTTCTATCTACTGACTGGTCCTTTGTCAGATCACTTGGCTCAAATGACCTTACATAAGTTGGAAATTTATCGCAGCAGCATGGAGGAAATAATAATAGAGAGACACGAGAGTGGTGGCCATTTGGAACAAAACTATAGTTTTGATGCTCTGAATCAGCTGGACTTACAATTTTTGGAAAACCTGAAAGTTATTACGTGGAAAGGAATACGTCCAGAATTGCTTTTCCATAGGCTCACCGTTCTGTATACCATTGACTGCGACCAGCTGGAAGATATCTCGTGGGCGCTGCATTTACCTTTTCTGGAAGAACTATGGGTGCAAGGTTGTGGCAAGATGAGACATGCCATTCGGAACATATCAAAGCAAGAGAGCTCAATGCAATCGATTGATACATTCCCGCGCCTCGTTTCTATGCTATTTGCAAATAACGATGGGTTGGTCAGCATATGTGATTCAGATGTGACATTCCCATCCCTAAAGAGCCTGAGGGTCACAAATTGTGAAAATCTTAAGAGGCTTCCTTTTCGGCAGCAGAGCTTGCCACCCAAGTTGCAGGTTATATACTCCGATAGTGTTGAATGGTGGGATAATCTTGAATGGGAAGAAGAAGGTATCAGACCAATGCTGGAGCCCCTTCTTAAAATCGTGTCATAA
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| Protein seq | MKGACRDKDGPLSMETVFRQLKFSYDSLRNDTLKRCFLTCALWPEDVFIATDELDQCWMGLGLVDKDDIQSSYREACNVRSELQSACLLESWHTSRVITMHDVVRDMALWICCGCSEKNDNWVVHAQVGKNLSRRTIPWSKAECVSLMWNRIEELPPMDSNYFPAKLRTLCLQGNRLDGRIVETLKNFTALTYLDLCSNSLTNIPAEICALANLEYLDLGYNSGICEVPTCFRELSKLKFLYLSCTNVWRIPEDVISSLKALQVIDLTPKPKPWNRYGNRENHADHMPSVVLIQELTKLSKLKAVGITVESVSSYEALKEYPNLPIRRLVLNIEERESVFYLLTGPLSDHLAQMTLHKLEIYRSSMEEIIIERHESGGHLEQNYSFDALNQLDLQFLENLKVITWKGIRPELLFHRLTVLYTIDCDQLEDISWALHLPFLEELWVQGCGKMRHAIRNISKQESSMQSIDTFPRLVSMLFANNDGLVSICDSDVTFPSLKSLRVTNCENLKRLPFRQQSLPPKLQVIYSDSVEWWDNLEWEEEGIRPMLEPLLKIVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.5646145 | 6.0194635 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0272900 | RBH | 0.327070 | 0.223322 | 0.306165 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g10054 | RBH | 0.217939 | 0.148001 | 0.077657 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0272900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003380 | RBH | 1.616687 | 100.798714 | 2.374515 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003110 | SBH | 0.218136 | 1.048699 | 1.183370 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003150 | SBH | 0.257032 | 0.0 | 2.301605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0002990 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003460 | SBH | 0.0 | 2.647015 | 1.885429 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0092200 | RBH | 0.4843275 | 13.3511525 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003370 | SBH | 0.0 | 0.095639 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003400 | SBH | 0.0 | 0.080804 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003420 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003430 | SBH | 0.0 | 3.712296 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003330 | SBH | 0.000000 | 0.0 | 0.067307 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003150 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003290 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003450 | SBH | 4.853796 | 92.027611 | 1.864229 |
