Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_06G0198400 | OGI:06035090 | 2/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr06:12038751-12039345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGGAGGTTACCAGATCTCTGAGACTACCATCGATCCGACAGAGCGGAACGACCAGAAAAGAAGTGGAGTTAGAAAGCCGTATGATAGGTGGTAACTATCTTGTACGGTTCGGAGGGTAAGCGGCGTACTCTGGGGGAATATTAGGCTCTATCGAACATACAGGGAATTGGGGGTAGCATTTTACTTATGTTAAGTCATGGACTGGTTTCTTCAGCCCTTTTTCTATGTGTTGGTGTTCTATATGACCGACATAAGACTCGACTTGTTAGATATTATGGAGGTTTAGTGAGCACCATGCCGAATTTCTCTACCATTTTCTTCTTTTTCACTTTAGCCAATATGAGTTTACCCGGCACTAGCAGCTTTATTGGGGAATTTCTAATCTTAGTAGGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGCGCGGCGTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCTATAAATTCTCCGATCTAAATGGCAGAGAAGTTTCCATATTTCTACCTTTTCTTGTTGGAGGGGCGACCGTCCGTTGA
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| CDS seq | ATGTCGGAGGTTACCAGATCTCTGAGACTACCATCGATCCGACAGAGCGGAACGACCAGAAAAGAAGTGGAGTTAGAAAGCCGTATGATAGGTGCCCTTTTTCTATGTGTTGGTGTTCTATATGACCGACATAAGACTCGACTTGTTAGATATTATGGAGGTTTAGTGAGCACCATGCCGAATTTCTCTACCATTTTCTTCTTTTTCACTTTAGCCAATATGAGTTTACCCGGCACTAGCAGCTTTATTGGGGAATTTCTAATCTTAGTAGGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGCGCGGCGTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCTATAAATTCTCCGATCTAAATGGCAGAGAAGTTTCCATATTTCTACCTTTTCTTGTTGGAGGGGCGACCGTCCGTTGA
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| Protein seq | MSEVTRSLRLPSIRQSGTTRKEVELESRMIGALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLYKFSDLNGREVSIFLPFLVGGATVR |
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| Function | NADH-ubiquinone oxidoreductase chain 4 [UniProtKB/Swiss-Prot:P27572] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_06G0198400 | OsZS97_06T0198400-mRNA-1 | Chr06 | 12038751 | 12039345 | + | makerRMon | ||
| CDS seq | ATGTCGGAGGTTACCAGATCTCTGAGACTACCATCGATCCGACAGAGCGGAACGACCAGAAAAGAAGTGGAGTTAGAAAGCCGTATGATAGGTGCCCTTTTTCTATGTGTTGGTGTTCTATATGACCGACATAAGACTCGACTTGTTAGATATTATGGAGGTTTAGTGAGCACCATGCCGAATTTCTCTACCATTTTCTTCTTTTTCACTTTAGCCAATATGAGTTTACCCGGCACTAGCAGCTTTATTGGGGAATTTCTAATCTTAGTAGGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGCGCGGCGTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCTATAAATTCTCCGATCTAAATGGCAGAGAAGTTTCCATATTTCTACCTTTTCTTGTTGGAGGGGCGACCGTCCGTTGA
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| Protein seq | MSEVTRSLRLPSIRQSGTTRKEVELESRMIGALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLYKFSDLNGREVSIFLPFLVGGATVR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 399.7154085 | 1618.7677 | 667.7882385 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016660 | RBH | 26.684082 | 295.553467 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015401 | SBH | 322.471252 | 5.319046 | 260.323944 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
