Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_06G0092700 | OGI:06015610 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr06:5375467-5377277 | ||||||||
| Gene Symbol | ORF3 | ||||||||||
| DNA seq | CTCCTGTTCTCTTTAAGAATGTTGTTACTGACTTTTGCCAAGAAGTAGGCATGAGTGGCACATCACCTAACCAACCAATATACTGTGAGTTGTCTCCACTGCTTAATACCCAAAATCCAATCAGGTTTAGCTTTGTAATCAGCAGAGTGTTTCGTTGGACACTTAGACTGAATTATCCACTATGAGGCAGCAGCTGGTGACGCTGCTCGTCTTGATCGCGCTGCCCGCGCGCGCCGCGTCCGCGCCGGGCGCCGGCGCCGGCGGCGTCGTCGTGGCGCGGGTCACGCACGCCGACGCCGGCCGCGGCCTCGCCATGCCGGAGATCGTGCGGCGCATGGCGCACCGCGCCAGGGCGAGGCGGAGGCTGCTGTCGGCGGCGGAGGCGGCGCCGGTGCGCGCGCGGGTGCGCGCCGGGCTCGGCGCCGGCGGCGGGATCGTGACGAACGAGTACCTGATGCACGTGTCCGTGGGCACGCCGCCGCGGCCCGTGGCGCTGACGCTCGACACGGGGAGCGATCTCGTGTGGACGCAGTGCGCGCCGTGCCTGGACTGCTTCGAGCAGGGCGCCGCCCCGGTGCTGGACCCGGCCGCGTCGTCCACCCACGCCGCGCTCCCCTGCGACGCGCCGCTGTGCCGCGCGCTCCCGTTCACGTCGTGCGGCGGGCGGAGCTGGGGCGACCGGAGCTGCGTCTACGTCTACCACTACGGCGACAGGTCGCTCACCGTCGGCCAGCTCGCCACCGACAGCTTCACCTTCGGCGGCGACGACAATGCAGGTGGCCTCGCCGCGAGGCGCGTCACGTTCGGCTGCGGCCACATCAACAAAGGCATCTTCCAGGCGAACGAGACGGGCATCGCCGGGTTCGGCCGGGGACGGTGGTCGCTGCCGTCGCAGCTCAACGTCACCAGCTTCTCCTACTGCTTCACCTCCATGTTCGACACCAAGAGCAGCAGCGTCGTCACGCTCGGCGCGGCGGCGGCCGAGCTCCTCCACACCCACCACGCGGCGCACACCGGCGACGTCAGGACCACCCGCCTCATCAAGAACCCGTCGCAGCCATCCCTCTACTTCGTCCCGCTGCGCGGCATCTCGGTGGGCGGCGCGCGGGTCGCCGTGCCGGAGTCGCGGCTCCGGTCGTCGACGATCATCGACTCCGGCGCGTCGATCACGACGCTGCCGGAGGACGTGTACGAGGCGGTGAAGGCGGAGTTCGTGTCGCAGGTCGGGCTCCCCGCCGCCGCCGCGGGATCGGCGGCGCTCGACCTGTGCTTCGCTCTGCCCGTGGCGGCGCTCTGGCGGCGCCCCGCCGTGCCGGCGCTGACGCTGCACCTCGACGGCGGCGCCGACTGGGAGCTCCCGCGGGGCAACTACGTGTTCGAGGACTACGCGGCGCGCGTGCTGTGCGTCGTGCTCGACGCGGCGGCCGGCGAGCAGGTGGTCATCGGCAACTACCAGCAGCAGAACACGCACGTCGTGTACGACCTCGAGAACGACGTGCTCTCCTTCGCGCCGGCTCGCTGCGACAAGCTCGCGGCCTCACTGTAGGCTGTAGTAGTTAGTGTGTACTGTGTAGTTAATTACTACTAATAACTTTGTAAGAAAGCAAGTAGGGTGTTTAGTAGTAGTAATTACTAATCAGGTGAAAGTGAAACCTGCCCACTGTAAAAGGATCGGAGGGAGAGTTGAATCAAGAGGGTCTCACTTTTGGTCGCAATTTGTGTCACCGTATTGAGGTTCTCTTTTCGAATGTTAGATAAGGAAAACGTAGAAATTAAAGTACTCCCTCCGTTTCAAAATATTTGACACCATT
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| CDS seq | ATGAGGCAGCAGCTGGTGACGCTGCTCGTCTTGATCGCGCTGCCCGCGCGCGCCGCGTCCGCGCCGGGCGCCGGCGCCGGCGGCGTCGTCGTGGCGCGGGTCACGCACGCCGACGCCGGCCGCGGCCTCGCCATGCCGGAGATCGTGCGGCGCATGGCGCACCGCGCCAGGGCGAGGCGGAGGCTGCTGTCGGCGGCGGAGGCGGCGCCGGTGCGCGCGCGGGTGCGCGCCGGGCTCGGCGCCGGCGGCGGGATCGTGACGAACGAGTACCTGATGCACGTGTCCGTGGGCACGCCGCCGCGGCCCGTGGCGCTGACGCTCGACACGGGGAGCGATCTCGTGTGGACGCAGTGCGCGCCGTGCCTGGACTGCTTCGAGCAGGGCGCCGCCCCGGTGCTGGACCCGGCCGCGTCGTCCACCCACGCCGCGCTCCCCTGCGACGCGCCGCTGTGCCGCGCGCTCCCGTTCACGTCGTGCGGCGGGCGGAGCTGGGGCGACCGGAGCTGCGTCTACGTCTACCACTACGGCGACAGGTCGCTCACCGTCGGCCAGCTCGCCACCGACAGCTTCACCTTCGGCGGCGACGACAATGCAGGTGGCCTCGCCGCGAGGCGCGTCACGTTCGGCTGCGGCCACATCAACAAAGGCATCTTCCAGGCGAACGAGACGGGCATCGCCGGGTTCGGCCGGGGACGGTGGTCGCTGCCGTCGCAGCTCAACGTCACCAGCTTCTCCTACTGCTTCACCTCCATGTTCGACACCAAGAGCAGCAGCGTCGTCACGCTCGGCGCGGCGGCGGCCGAGCTCCTCCACACCCACCACGCGGCGCACACCGGCGACGTCAGGACCACCCGCCTCATCAAGAACCCGTCGCAGCCATCCCTCTACTTCGTCCCGCTGCGCGGCATCTCGGTGGGCGGCGCGCGGGTCGCCGTGCCGGAGTCGCGGCTCCGGTCGTCGACGATCATCGACTCCGGCGCGTCGATCACGACGCTGCCGGAGGACGTGTACGAGGCGGTGAAGGCGGAGTTCGTGTCGCAGGTCGGGCTCCCCGCCGCCGCCGCGGGATCGGCGGCGCTCGACCTGTGCTTCGCTCTGCCCGTGGCGGCGCTCTGGCGGCGCCCCGCCGTGCCGGCGCTGACGCTGCACCTCGACGGCGGCGCCGACTGGGAGCTCCCGCGGGGCAACTACGTGTTCGAGGACTACGCGGCGCGCGTGCTGTGCGTCGTGCTCGACGCGGCGGCCGGCGAGCAGGTGGTCATCGGCAACTACCAGCAGCAGAACACGCACGTCGTGTACGACCTCGAGAACGACGTGCTCTCCTTCGCGCCGGCTCGCTGCGACAAGCTCGCGGCCTCACTGTAG
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| Protein seq | MRQQLVTLLVLIALPARAASAPGAGAGGVVVARVTHADAGRGLAMPEIVRRMAHRARARRRLLSAAEAAPVRARVRAGLGAGGGIVTNEYLMHVSVGTPPRPVALTLDTGSDLVWTQCAPCLDCFEQGAAPVLDPAASSTHAALPCDAPLCRALPFTSCGGRSWGDRSCVYVYHYGDRSLTVGQLATDSFTFGGDDNAGGLAARRVTFGCGHINKGIFQANETGIAGFGRGRWSLPSQLNVTSFSYCFTSMFDTKSSSVVTLGAAAAELLHTHHAAHTGDVRTTRLIKNPSQPSLYFVPLRGISVGGARVAVPESRLRSSTIIDSGASITTLPEDVYEAVKAEFVSQVGLPAAAAGSAALDLCFALPVAALWRRPAVPALTLHLDGGADWELPRGNYVFEDYAARVLCVVLDAAAGEQVVIGNYQQQNTHVVYDLENDVLSFAPARCDKLAASL |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_06G0092700 | OsZS97_06T0092700.1 | Chr06 | 5375467 | 5377277 | + | makerRMon | ||
| CDS seq | ATGAGGCAGCAGCTGGTGACGCTGCTCGTCTTGATCGCGCTGCCCGCGCGCGCCGCGTCCGCGCCGGGCGCCGGCGCCGGCGGCGTCGTCGTGGCGCGGGTCACGCACGCCGACGCCGGCCGCGGCCTCGCCATGCCGGAGATCGTGCGGCGCATGGCGCACCGCGCCAGGGCGAGGCGGAGGCTGCTGTCGGCGGCGGAGGCGGCGCCGGTGCGCGCGCGGGTGCGCGCCGGGCTCGGCGCCGGCGGCGGGATCGTGACGAACGAGTACCTGATGCACGTGTCCGTGGGCACGCCGCCGCGGCCCGTGGCGCTGACGCTCGACACGGGGAGCGATCTCGTGTGGACGCAGTGCGCGCCGTGCCTGGACTGCTTCGAGCAGGGCGCCGCCCCGGTGCTGGACCCGGCCGCGTCGTCCACCCACGCCGCGCTCCCCTGCGACGCGCCGCTGTGCCGCGCGCTCCCGTTCACGTCGTGCGGCGGGCGGAGCTGGGGCGACCGGAGCTGCGTCTACGTCTACCACTACGGCGACAGGTCGCTCACCGTCGGCCAGCTCGCCACCGACAGCTTCACCTTCGGCGGCGACGACAATGCAGGTGGCCTCGCCGCGAGGCGCGTCACGTTCGGCTGCGGCCACATCAACAAAGGCATCTTCCAGGCGAACGAGACGGGCATCGCCGGGTTCGGCCGGGGACGGTGGTCGCTGCCGTCGCAGCTCAACGTCACCAGCTTCTCCTACTGCTTCACCTCCATGTTCGACACCAAGAGCAGCAGCGTCGTCACGCTCGGCGCGGCGGCGGCCGAGCTCCTCCACACCCACCACGCGGCGCACACCGGCGACGTCAGGACCACCCGCCTCATCAAGAACCCGTCGCAGCCATCCCTCTACTTCGTCCCGCTGCGCGGCATCTCGGTGGGCGGCGCGCGGGTCGCCGTGCCGGAGTCGCGGCTCCGGTCGTCGACGATCATCGACTCCGGCGCGTCGATCACGACGCTGCCGGAGGACGTGTACGAGGCGGTGAAGGCGGAGTTCGTGTCGCAGGTCGGGCTCCCCGCCGCCGCCGCGGGATCGGCGGCGCTCGACCTGTGCTTCGCTCTGCCCGTGGCGGCGCTCTGGCGGCGCCCCGCCGTGCCGGCGCTGACGCTGCACCTCGACGGCGGCGCCGACTGGGAGCTCCCGCGGGGCAACTACGTGTTCGAGGACTACGCGGCGCGCGTGCTGTGCGTCGTGCTCGACGCGGCGGCCGGCGAGCAGGTGGTCATCGGCAACTACCAGCAGCAGAACACGCACGTCGTGTACGACCTCGAGAACGACGTGCTCTCCTTCGCGCCGGCTCGCTGCGACAAGCTCGCGGCCTCACTGTAG
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| Protein seq | MRQQLVTLLVLIALPARAASAPGAGAGGVVVARVTHADAGRGLAMPEIVRRMAHRARARRRLLSAAEAAPVRARVRAGLGAGGGIVTNEYLMHVSVGTPPRPVALTLDTGSDLVWTQCAPCLDCFEQGAAPVLDPAASSTHAALPCDAPLCRALPFTSCGGRSWGDRSCVYVYHYGDRSLTVGQLATDSFTFGGDDNAGGLAARRVTFGCGHINKGIFQANETGIAGFGRGRWSLPSQLNVTSFSYCFTSMFDTKSSSVVTLGAAAAELLHTHHAAHTGDVRTTRLIKNPSQPSLYFVPLRGISVGGARVAVPESRLRSSTIIDSGASITTLPEDVYEAVKAEFVSQVGLPAAAAGSAALDLCFALPVAALWRRPAVPALTLHLDGGADWELPRGNYVFEDYAARVLCVVLDAAAGEQVVIGNYQQQNTHVVYDLENDVLSFAPARCDKLAASL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.041681 | 0.865473 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0209100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g10670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0209100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0007500 | RBH | 0.0 | 3.761366 | 0.960312 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0007330 | RBH | 0.0 | 1.408529 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0007360 | RBH | 0.0 | 0.0 | 2.127480 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0007420 | RBH | 0.0 | 0.084970 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0007340 | RBH | 0.0 | 0.0 | 0.811741 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0092700 | RBH | 1.345878 | 2.0058795 | 0.00804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0007130 | RBH | 0.0 | 0.165093 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0545600 | RBH | 2.9278855 | 0.881118 | 31.354166 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0007520 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0007390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0007450 | RBH | 0.0 | 4.582178 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0007470 | RBH | 0.0 | 0.307569 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0007310 | RBH | 0.0 | 1.048193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G007200 | RBH | 0.0 | 0.0 | 0.684912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0007480 | RBH | 0.0 | 5.675599 | 0.563470 |
