Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_05G0003600 | OGI:07002320 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr05:246424-249123 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGGAGTTGTTGCAGAGAGCGGCAGCCACTGTGATGTCACTCAGCTTGACGAAGGAGAAAAGAATTGGGAATCTGTACTGCACTGATCCTCCGTCTGGCAACAAGCTATCGCACCAAAACGAGGTAAAGGCTCCGTTCCCCAGCAGTACTTTGCTACCAGCGGCAAAGCAGTGCAGCGACTTTCTGTCAGCTAGAGGTGCAATGCGCGTCCAAGAATGCTCTGGCTCAGCGCGACGCAGCCAAATCCACCGAGTGCGTAGCGCAATTCCCATTAGGCGTAGGTTTCTAATCCCTAGTCCCCCCTGCTCGATAGAGAGGCAAAGCTTCTCCCAAGCCACCAAGCTGCAAGAGCCCGCAGCATCTTCATCACCCTTCCAAAGGAAACCCCGGCATTTCTTCTCAATTTCGTTGATCGCCCAGGCTGGTAGTTCCAAGACGGACATGAAGTAGAGTGGGAGCGCCATTAACACATGCTTGATCAGGGCTAGACGGGCATCTGGAGATAAAAGCTTGGGCTTCCAGCCAGCCAAATTTTTGGCAAGCCTATCCATCATCGGTTGGATTTGCACTTTCGTCGGTTTACGCACAGAAAGCGGCAGCCCCAAGTAAACAATCGGCAGTTGCTTGATTGGGTATGTCAACACCTCTGTGACCTCTTCAATTTGAACATCAGTGCAATGGATCGGGGTCAACGAGCTCTTGGCTAGGTTGGAAACCAAGCTGGTGGCGTCACCCATCAACTTGAGTATGAAGTGGATCATCAGCGCGTCCCGCCGAGAAGGATGGAAGAAGATGATGGCATCATCCGCATAGATTGAGGCGCGAAGTGGCAAGGAACCCGTAGCAAGTGGGGAAAGCACGCCACGGCTCGCCGCCGTGGAGCAGAGAGCCGCAAACGCCTCCATCACAATGACGAAAAGCAACGGTGAGAGTGGATCCCCTAGCCTGAGTCCCTGAGCTAGCTTGATCCTTTGAGTGTCTCTACCATTGATGGTGACGGTGGTTGACGAAGTGAAAAGCAGAGTAGAAACACAGTCACGCCATCGAGCGCCGAAGCCCAAATGTCGAAGCAGCTCCAAAAGGAATTCCCAAGATACCGTATCAAAAGCTTTTGCGATGTCAATCTTCAACAGCATGGCAGGCGTTTTGGACTGATGCAACTTTTTAACTACACCATGAACGTAGAGGAAGTTCTCTTGTATTCTTCTGCGCCTAATAAAGGCCGACTGTGCAGGCCCGATCAATTCATCCATTCTCGGGGCGAGACGAAGTGCTAGAATTTTGGTCAGGATCTTGGCAAAACTGTGAATCAAACTAATTGGGCGAAAGTCAGTTAGTTGATTCGGGTCCTCTTTCTTGGGCAGGAGGATGATGGAAGCTGTGTTGACGAGATGTAGGTGCTGGGAATTCGCTCTCCACCCTAAGTTAAGGGCCGCAACCAAGTCATCTTTGATAATTCCCCAACAAACCTTGAAGAAGGTGGTGCTAAAACGACATGGCCCCGGCGCCTTGTCACTTGGTGACGCCATGATCGCCTTTTTCACCTCATCCTCAATGATGTCGCCCTCTAATTCAGAGAGATCGTGGGCCGCCAAACCAATCAAACCGAAATTAACGGACGCCGAAGGCGGACACGGCGTCCCCAAAATATTGAGGAAATAGTTGTATGCAGCCTGTAGCTTATCTTCTTCAGTGGTAGCATAGACACCATCATGACAGAGGGTAGGAATTGCTTTCTTTCTTCGACGCGCATTGATCTTAAGGCGAAAAAATTGTGCAGTTGTGCCGCTATGCTTGAGGAATAACAACCTGGCTCGCTGACGGAGCCTAATGTGCTCCAGGGAGGCGAGAGCAAGGCATCGTCCCTTCAAGGTAGCACGCAGCGATCGCTCCTCTGCCGAGAGAAGCCGGTCGTCCTGGGTCTTGTACAGCTGAAGAATAATTTCATGAGCCACTGCGAGCTGCTGCCGAAGTTCGTTGATTCGCCTAGCCCCCCACGAACGAAGAGATGTGGCAGTAGATTTCAACTTGAGATGGAGGGAGGAAACAGAGTTGGAGCCCGACGGCGCAGCCGCCCAAGCTTGCCGGACCACTTCCTCAAACCCATCTAGCTTGGTCCAGAAAGACTCAAACTTAAACTTTCTCGGACGGTGCATCATGTTATCGCAAGTCAAAAGCAGAGGGCAGTGGTCGGACGCGGACGAACTGAGAGCTTGCAAATGGGCATCCTGGAAAATTTCCTCCCATTCCCCATTAATCAACACTTTATCAATTTTGGTTAAGGTTGGCTGCTCTTGTTCACTGCTCCAAGTATAGCGGCGCCTGAACTGATAAACTTCACGGAGCTCCAGAACGTCAATAGTTTGTCTAAACTTGTTAATCAGTCTGCGATTCACATTGCCATTGTTCTTGTCACCCTCCGAGGCCAACAAGTTGAAGTCACCAACCACACACCACGCCCCCACTGCAAGCTGCCCTACCACCAGCAGCTCCTCTAGAAAAAGGATTTTGTCGCCGTCGGACTGCGGCCCTTCCTTTATGCAGGCAAGAAACAGAGAAGAGATCACTCCTCCAAGCAGGAATGAAATCCGCACAGTCTAACACAGGACCACAAGACTGGTTCTGCAACCGCTGGTCCAAAACAGCCAGTTTAGACTCTTGACAACAAAAAAAGGACGCACTAGAAGTTCTAACAACAT
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| CDS seq | ATGTTGTTAGAACTTCTAACTGTGCGGATTTCATTCCTGCTTGGAGGAGTGATCTCTTCTCTGTTTCTTGCCTGCATAAAGGAAGGGCCGCAGTCCGACGGCGACAAAATCCTTTTTCTAGAGGAGCTGCTGGTGGTAGGGCAGCTTGCAGTGGGGGCGTGGTGTGTGGTTGGTGACTTCAACTTGTTGGCCTCGGAGGGTGACAAGAACAATGGCAATGTGAATCGCAGACTGATTAACAAGTTTAGACAAACTATTGACGTTCTGGAGCTCCGTGAAGTTTATCAGTTCAGGCGCCGCTATACTTGGAGCAGTGAACAAGAGCAGCCAACCTTAACCAAAATTGATAAAGTGTTGATTAATGGGGAATGGGAGGAAATTTTCCAGGATGCCCATTTGCAAGCTCTCAGTTCGTCCGCGTCCGACCACTGCCCTCTGCTTTTGACTTGCGATAACATGATGCACCGTCCGAGAAAGTTTAAGTTTGAGTCTTTCTGGACCAAGCTAGATGGGTTTGAGGAAGTGGTCCGGCAAGCTTGGGCGGCTGCGCCGTCGGGCTCCAACTCTGTTTCCTCCCTCCATCTCAAGTTGAAATCTACTGCCACATCTCTTCGTTCGTGGGGGGCTAGGCGAATCAACGAACTTCGGCAGCAGCTCGCAGTGGCTCATGAAATTATTCTTCAGCTGTACAAGACCCAGGACGACCGGCTTCTCTCGGCAGAGGAGCGATCGCTGCGTGCTACCTTGAAGGGACGATGCCTTGCTCTCGCCTCCCTGGAGCACATTAGGCTCCGTCAGCGAGCCAGGTTGTTATTCCTCAAGCATAGCGGCACAACTGCACAATTTTTTCGCCTTAAGATCAATGCGCGTCGAAGAAAGAAAGCAATTCCTACCCTCTGTCATGATGGTGTCTATGCTACCACTGAAGAAGATAAGCTACAGGCTGCATACAACTATTTCCTCAATATTTTGGGGACGCCGTGTCCGCCTTCGGCGTCCGTTAATTTCGGTTTGATTGGTTTGGCGGCCCACGATCTCTCTGAATTAGAGGGCGACATCATTGAGGATGAGGTGAAAAAGGCGATCATGGCGTCACCAAGTGACAAGGCGCCGGGGCCATGTCGTTTTAGCACCACCTTCTTCAAGGTTTGTTGGGGAATTATCAAAGATGACTTGGTTGCGGCCCTTAACTTAGGGTGGAGAGCGAATTCCCAGCACCTACATCTCGTCAACACAGCTTCCATCATCCTCCTGCCCAAGAAAGAGGACCCGAATCAACTAACTGACTTTCGCCCAATTAGTTTGATTCACAGTTTTGCCAAGATCCTGACCAAAATTCTAGCACTTCGTCTCGCCCCGAGAATGGATGAATTGATCGGGCCTGCACAGTCGGCCTTTATTAGGCGCAGAAGAATACAAGAGAACTTCCTCTACGTTCATGGTGTAGTTAAAAAGTTGCATCAGTCCAAAACGCCTGCCATGCTGTTGAAGATTGACATCGCAAAAGCTTTTGATACGGTATCTTGGGAATTCCTTTTGGAGCTGCTTCGACATTTGGGCTTCGGCGCTCGATGGCGTGACTGTGTTTCTACTCTGCTTTTCACTTCGTCAACCACCGTCACCATCAATGGTAGAGACACTCAAAGGATCAAGCTAGCTCAGGGACTCAGGCTAGGGGATCCACTCTCACCGTTGCTTTTCGTCATTGTGATGGAGGCGTTTGCGGCTCTCTGCTCCACGGCGGCGAGCCGTGGCGTGCTTTCCCCACTTGCTACGGGTTCCTTGCCACTTCGCGCCTCAATCTATGCGGATGATGCCATCATCTTCTTCCATCCTTCTCGGCGGGACGCGCTGATGATCCACTTCATACTCAAGTTGATGGGTGACGCCACCAGCTTGGTTTCCAACCTAGCCAAGAGCTCGTTGACCCCGATCCATTGCACTGATGTTCAAATTGAAGAGGTCACAGAGGTGTTGACATACCCAATCAAGCAACTGCCGATTGTTTACTTGGGGCTGCCGCTTTCTGTGCGTAAACCGACGAAAGTGCAAATCCAACCGATGATGGATAGGCTTGCCAAAAATTTGGCTGGCTGGAAGCCCAAGCTTTTATCTCCAGATGCCCGTCTAGCCCTGATCAAGCATGTGTTAATGGCGCTCCCACTCTACTTCATGTCCGTCTTGGAACTACCAGCCTGGGCGATCAACGAAATTGAGAAGAAATGCCGGGGTTTCCTTTGGAAGGGTGATGAAGATGCTGCGGGCTCTTGCAGCTTGGTGGCTTGGGAGAAGCTTTGCCTCTCTATCGAGCAGGGGGGACTAGGGATTAGAAACCTACGCCTAATGGGAATTGCGCTACGCACTCGGTGGATTTGGCTGCGTCGCGCTGAGCCAGAGCATTCTTGGACGCGCATTGCACCTCTAGCTGACAGAAAGTCGCTGCACTGCTTTGCCGCTGGTAGCAAAGTACTGCTGGGGAACGGAGCCTTTACCTCGTTTTGGTGCGATAGCTTGTTGCCAGACGGAGGATCAGTGCAGTACAGATTCCCAATTCTTTTCTCCTTCGTCAAGCTGAGTGACATCACAGTGGCTGCCGCTCTCTGCAACAACTCCTAG
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| Protein seq | MLLELLTVRISFLLGGVISSLFLACIKEGPQSDGDKILFLEELLVVGQLAVGAWCVVGDFNLLASEGDKNNGNVNRRLINKFRQTIDVLELREVYQFRRRYTWSSEQEQPTLTKIDKVLINGEWEEIFQDAHLQALSSSASDHCPLLLTCDNMMHRPRKFKFESFWTKLDGFEEVVRQAWAAAPSGSNSVSSLHLKLKSTATSLRSWGARRINELRQQLAVAHEIILQLYKTQDDRLLSAEERSLRATLKGRCLALASLEHIRLRQRARLLFLKHSGTTAQFFRLKINARRRKKAIPTLCHDGVYATTEEDKLQAAYNYFLNILGTPCPPSASVNFGLIGLAAHDLSELEGDIIEDEVKKAIMASPSDKAPGPCRFSTTFFKVCWGIIKDDLVAALNLGWRANSQHLHLVNTASIILLPKKEDPNQLTDFRPISLIHSFAKILTKILALRLAPRMDELIGPAQSAFIRRRRIQENFLYVHGVVKKLHQSKTPAMLLKIDIAKAFDTVSWEFLLELLRHLGFGARWRDCVSTLLFTSSTTVTINGRDTQRIKLAQGLRLGDPLSPLLFVIVMEAFAALCSTAASRGVLSPLATGSLPLRASIYADDAIIFFHPSRRDALMIHFILKLMGDATSLVSNLAKSSLTPIHCTDVQIEEVTEVLTYPIKQLPIVYLGLPLSVRKPTKVQIQPMMDRLAKNLAGWKPKLLSPDARLALIKHVLMALPLYFMSVLELPAWAINEIEKKCRGFLWKGDEDAAGSCSLVAWEKLCLSIEQGGLGIRNLRLMGIALRTRWIWLRRAEPEHSWTRIAPLADRKSLHCFAAGSKVLLGNGAFTSFWCDSLLPDGGSVQYRFPILFSFVKLSDITVAAALCNNS |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:P11369] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_05G0003600 | OsZS97_05T0003600.1 | Chr05 | 246424 | 249123 | - | makerRMon | ||
| CDS seq | ATGTTGTTAGAACTTCTAACTGTGCGGATTTCATTCCTGCTTGGAGGAGTGATCTCTTCTCTGTTTCTTGCCTGCATAAAGGAAGGGCCGCAGTCCGACGGCGACAAAATCCTTTTTCTAGAGGAGCTGCTGGTGGTAGGGCAGCTTGCAGTGGGGGCGTGGTGTGTGGTTGGTGACTTCAACTTGTTGGCCTCGGAGGGTGACAAGAACAATGGCAATGTGAATCGCAGACTGATTAACAAGTTTAGACAAACTATTGACGTTCTGGAGCTCCGTGAAGTTTATCAGTTCAGGCGCCGCTATACTTGGAGCAGTGAACAAGAGCAGCCAACCTTAACCAAAATTGATAAAGTGTTGATTAATGGGGAATGGGAGGAAATTTTCCAGGATGCCCATTTGCAAGCTCTCAGTTCGTCCGCGTCCGACCACTGCCCTCTGCTTTTGACTTGCGATAACATGATGCACCGTCCGAGAAAGTTTAAGTTTGAGTCTTTCTGGACCAAGCTAGATGGGTTTGAGGAAGTGGTCCGGCAAGCTTGGGCGGCTGCGCCGTCGGGCTCCAACTCTGTTTCCTCCCTCCATCTCAAGTTGAAATCTACTGCCACATCTCTTCGTTCGTGGGGGGCTAGGCGAATCAACGAACTTCGGCAGCAGCTCGCAGTGGCTCATGAAATTATTCTTCAGCTGTACAAGACCCAGGACGACCGGCTTCTCTCGGCAGAGGAGCGATCGCTGCGTGCTACCTTGAAGGGACGATGCCTTGCTCTCGCCTCCCTGGAGCACATTAGGCTCCGTCAGCGAGCCAGGTTGTTATTCCTCAAGCATAGCGGCACAACTGCACAATTTTTTCGCCTTAAGATCAATGCGCGTCGAAGAAAGAAAGCAATTCCTACCCTCTGTCATGATGGTGTCTATGCTACCACTGAAGAAGATAAGCTACAGGCTGCATACAACTATTTCCTCAATATTTTGGGGACGCCGTGTCCGCCTTCGGCGTCCGTTAATTTCGGTTTGATTGGTTTGGCGGCCCACGATCTCTCTGAATTAGAGGGCGACATCATTGAGGATGAGGTGAAAAAGGCGATCATGGCGTCACCAAGTGACAAGGCGCCGGGGCCATGTCGTTTTAGCACCACCTTCTTCAAGGTTTGTTGGGGAATTATCAAAGATGACTTGGTTGCGGCCCTTAACTTAGGGTGGAGAGCGAATTCCCAGCACCTACATCTCGTCAACACAGCTTCCATCATCCTCCTGCCCAAGAAAGAGGACCCGAATCAACTAACTGACTTTCGCCCAATTAGTTTGATTCACAGTTTTGCCAAGATCCTGACCAAAATTCTAGCACTTCGTCTCGCCCCGAGAATGGATGAATTGATCGGGCCTGCACAGTCGGCCTTTATTAGGCGCAGAAGAATACAAGAGAACTTCCTCTACGTTCATGGTGTAGTTAAAAAGTTGCATCAGTCCAAAACGCCTGCCATGCTGTTGAAGATTGACATCGCAAAAGCTTTTGATACGGTATCTTGGGAATTCCTTTTGGAGCTGCTTCGACATTTGGGCTTCGGCGCTCGATGGCGTGACTGTGTTTCTACTCTGCTTTTCACTTCGTCAACCACCGTCACCATCAATGGTAGAGACACTCAAAGGATCAAGCTAGCTCAGGGACTCAGGCTAGGGGATCCACTCTCACCGTTGCTTTTCGTCATTGTGATGGAGGCGTTTGCGGCTCTCTGCTCCACGGCGGCGAGCCGTGGCGTGCTTTCCCCACTTGCTACGGGTTCCTTGCCACTTCGCGCCTCAATCTATGCGGATGATGCCATCATCTTCTTCCATCCTTCTCGGCGGGACGCGCTGATGATCCACTTCATACTCAAGTTGATGGGTGACGCCACCAGCTTGGTTTCCAACCTAGCCAAGAGCTCGTTGACCCCGATCCATTGCACTGATGTTCAAATTGAAGAGGTCACAGAGGTGTTGACATACCCAATCAAGCAACTGCCGATTGTTTACTTGGGGCTGCCGCTTTCTGTGCGTAAACCGACGAAAGTGCAAATCCAACCGATGATGGATAGGCTTGCCAAAAATTTGGCTGGCTGGAAGCCCAAGCTTTTATCTCCAGATGCCCGTCTAGCCCTGATCAAGCATGTGTTAATGGCGCTCCCACTCTACTTCATGTCCGTCTTGGAACTACCAGCCTGGGCGATCAACGAAATTGAGAAGAAATGCCGGGGTTTCCTTTGGAAGGGTGATGAAGATGCTGCGGGCTCTTGCAGCTTGGTGGCTTGGGAGAAGCTTTGCCTCTCTATCGAGCAGGGGGGACTAGGGATTAGAAACCTACGCCTAATGGGAATTGCGCTACGCACTCGGTGGATTTGGCTGCGTCGCGCTGAGCCAGAGCATTCTTGGACGCGCATTGCACCTCTAGCTGACAGAAAGTCGCTGCACTGCTTTGCCGCTGGTAGCAAAGTACTGCTGGGGAACGGAGCCTTTACCTCGTTTTGGTGCGATAGCTTGTTGCCAGACGGAGGATCAGTGCAGTACAGATTCCCAATTCTTTTCTCCTTCGTCAAGCTGAGTGACATCACAGTGGCTGCCGCTCTCTGCAACAACTCCTAG
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| Protein seq | MLLELLTVRISFLLGGVISSLFLACIKEGPQSDGDKILFLEELLVVGQLAVGAWCVVGDFNLLASEGDKNNGNVNRRLINKFRQTIDVLELREVYQFRRRYTWSSEQEQPTLTKIDKVLINGEWEEIFQDAHLQALSSSASDHCPLLLTCDNMMHRPRKFKFESFWTKLDGFEEVVRQAWAAAPSGSNSVSSLHLKLKSTATSLRSWGARRINELRQQLAVAHEIILQLYKTQDDRLLSAEERSLRATLKGRCLALASLEHIRLRQRARLLFLKHSGTTAQFFRLKINARRRKKAIPTLCHDGVYATTEEDKLQAAYNYFLNILGTPCPPSASVNFGLIGLAAHDLSELEGDIIEDEVKKAIMASPSDKAPGPCRFSTTFFKVCWGIIKDDLVAALNLGWRANSQHLHLVNTASIILLPKKEDPNQLTDFRPISLIHSFAKILTKILALRLAPRMDELIGPAQSAFIRRRRIQENFLYVHGVVKKLHQSKTPAMLLKIDIAKAFDTVSWEFLLELLRHLGFGARWRDCVSTLLFTSSTTVTINGRDTQRIKLAQGLRLGDPLSPLLFVIVMEAFAALCSTAASRGVLSPLATGSLPLRASIYADDAIIFFHPSRRDALMIHFILKLMGDATSLVSNLAKSSLTPIHCTDVQIEEVTEVLTYPIKQLPIVYLGLPLSVRKPTKVQIQPMMDRLAKNLAGWKPKLLSPDARLALIKHVLMALPLYFMSVLELPAWAINEIEKKCRGFLWKGDEDAAGSCSLVAWEKLCLSIEQGGLGIRNLRLMGIALRTRWIWLRRAEPEHSWTRIAPLADRKSLHCFAAGSKVLLGNGAFTSFWCDSLLPDGGSVQYRFPILFSFVKLSDITVAAALCNNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.0565065 | 0.0046315 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01420 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0003430 | SBH | 0.090104 | 0.030902 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0003500 | RBH | 0.0036095 | 0.119464 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0241400 | RBH | 0.2607515 | 3.957328 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000300 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
