Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os05g01420 OGI:07002320 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr05:245092-248165
Gene Symbol -
DNA seq

CTAGGAGTTGTTGCAGAGAGCGGCAGCCACTGTGATGTCACTCAGCTTGACGAAGGAGAAAAGAATTGGGAATCTGTACTGCACTGATCCTCCGTCTGGCAACAAGCTATCGCACCAAAACGAGGTAGAGGCTCCGTTCCCCAGCAGTACTTTGCTACTAGCGGCAAAGCAGTGCAGTGACTTTCTGTCAGCTAGAGGTGCAATGCGCGTCCAAGAACACTCTGGCTCAGCGCGGCACAGCCAAATCCACCGAGTGCGAAGCGCAATTCCCATTAGGCGTAGGTTTCTGATCCCTAGTCCCCCCTGCTCGATAGAGAGGCAAAGCTTCTCCCAAGCCACCAAGCTGCAAGAGCCCGCAGCATCTTCATCACCCTTCCAAATGAAACCCCAGCATTTCTTCTCAATTTCGTTGATCGCCCAGGCTGGTAGTTCCAAGACGGACATGAAGTAGAGTGGGAGCGCCATTAACACATGCTTGATCAGGGCTAGACGGGCATCTGGAGATAAAAGCTTGGGCTTCCAGCCAGCCAAATTTTTGGCAAGCCTATCCATCATCAGTTGGATTTGCACTTTCGTCGGTTTACGCACAGAAAGCGGCAGCCCCAAGTAAACAATCGGCAATTGCTTGATTGGGCATGTCAACACCTCTGTGACCTCTTCAATTTGAACATCAGTGCAATGGATCAGGGTCAACGAGCTCTTGGCTAGGTTGGAAACCAAGCCGGTGGCGTCACCCATCAACTTGAGTATGAAGTGGATCATCAGCGCGTCCCGCCGAGAAGGATGGAAGAAGATGATGGCATCATCCGCATAGATTGAGGCGCGAAGTGGCAAGGAACCCGTAGCAAGTGGGGAAAGCACGCCACGGCTCGCTGCCGTGGAGCAGAGAGCCGCAAATGCCTCCATCACAATGACGAAAAGCAACGGCGAGAGTGGATCCCCTTGCCTGAGTCCCCGAGCTAGCTTGATCCTTTGAGTGTCTCTACCATTGATGGTGACGGTGGTTGACGAAGTGAAAAGCAAAGCAGAAACACAGTCACGCCATCGAGCGCCGAAGCCCAAATGTCGAAGCAGCTCCAAAAGGAATTCCCAAGATACCGTATCAAAAGCTTTTGCGATGTCAATCTTCAACAGCATGGCAGGCGTTTTGGACCGATGCAACTTTTTAACTACACCATGAACGTAGAGGAAGTTCTCTTGTATTCTTCTGCGCCTAATAAAGGCTGACTGTGCAGGCCCGATCAATTCATCCATTCTCGGGGCGAGACGAAGTGCTAGAATTTTGGTCAGGATCTTGGCGAAACTGTGAATCAAACTAATTGGGCAAAAGTCAGTTAGTTGATTCGGGTCCTCTTTCTTGGGCAGGAGGATGATGGAAGCTGTGTTGACGAGATGTAGGTGCTGGGAATTCGCTCTCCACGCGTCCCCAAAATATTGAGGAAATAGTTGTATGCAGCCTGTAGCTTATCTTCTTCAGTGGTAGCATAGACACCATCATGACAGAGGGTAGGAATTGCTTTCTTTCTTCGACGTGCATTGATCTTAAGGCGAAAAAATTGTGCCGTTGTGCCGCTATGCTTGAGGAATAACAACCTGGCTCGCTGACGGAGCCTAATGTGCTCCAGGGAGGCGAGAGCAAGGCATCGTCCCTTCAAGGTAGCACGCAGCGATCGCTCCTCTGCCGAGAGAAGCCGGTCGTCCTGGGCCTTGTCCAGCTGAAGAATAATTTCATGAGCCACTGCGAGCTGCTGCCGAAGTTCGTTGATTCGCCTAGCCCCCCACGAACGAAGAGATGTGGCAGTAGATTTCAACTTGAGATGGAGGGAGGAAACAGAGTTGGAGCCCGACGGCGCAGCCGCCCAAGCTTGCCGGACCACTTCCTCAAACCCATCTAGCTTGGTCCAGAAAGACTCAAACTTATACTTTCTCGGACGGTGCATCATGTTATCGCAAGCCAAAAGCAGAGGGCAGTGGTCGGAAGCGGACGAACTGAGAGCTTGCAAATGGGCATCCTGGAAAATTTCCTCCCATTCCCCATTAATCAACACTTTATCAATTTTGGTTAAGGTTGGCTGCTCTTGTTCACTGCTCCAAGTATACCGGCGCCTGAACTGATAAACTTCACGGAGCTCCAGAACGTCAATAGTTTGTCTAAACTTGTTAATCAGTCTGCGATTCACATTGCCATTGTTCTTGTCACCCTCCGAGGCCAACAAGTTAAAGTCACCAACCACCAGCAGCTCCTCTAGAAAAAGGATTTTGTCGCCGTCGGACTGCGGCCCGTAGACATTGGTAAGCCTTCCAAATTACAAAATCTGAGAGAGAGAGCGACCACCTTCCTTTATGCAGGCAAGAAACAGAGAAGAGATCACTCCTCCAAGCCGTGAACAGGCCCCCTCTAGTTCCATCAGCAGGAATGAAATCCGCACAGTCTAACACAGGACCACAAGACTGGTTCTGCAACCGCTGGTCCAAAACAGCCAATTTAGACTCTTGACAACAAAAAATGGACGCACTAGAAGTTCTAACAACATCAGCTACTAGGGACCTTTTGCCCCTAACATTCCAAACTAAAAGACTACAAGACATAGAGACTCATGGGCTTCCACCACCAGAAAACAGAGCAATCAGGCCGCCCCGCAGACAGGGATCGCCACGCTGCACAGCGCCGCAAGTGCCTGCACATGAGACGGCGCGAGGGGTGATTTAAACAGCTCCAGGTACCGCAAGAGGTCCTGCTCTTCAACCTTGTTCTCGTTGTCGACGACGCCGAGTCTTTTCATCACGACGCGTTGCGCCCATGGCGGTGTGTAGGGAGCTGGGCGAGAGCGGTGTCTTGGCTGCCGAGGCCTCTTCCCAAGGATGGATGTCGCCGGCGGAGTCGGCCTCAGACATGGCGGCGGCAACTGAAGCACTGAGTGGCTGGCCAGGCTGCAAAGCTGGGCCACTCGAGGGTGAAGTGCGCTCCTCCAGCCCAGACCCAGACGGCTGAAGCGGGAAAGGTCGTGGGCCTTGAAGTTCTCTCCGGCGGCAGTAGACTCGGTTTGGGCCGAAGAAGCGCCAATCCGGCCCAT

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CDS seq

ATGGGCCGGATTGGCGCTTCTTCGGCCCAAACCGAGTCTACTGCCGCCGGAGAGAACTTCAAGGCCCACGACCTTTCCCGCTTCAGCCGTCTGGGTCTGGGCTGGAGGAGCGCACTTCACCCTCGAGTGGCCCAGCTTTGCAGCCTGGCCAGCCACTCAGTGCTTCAGTTGCCGCCGCCATGTCTGAGGCCGACTCCGCCGGCGACATCCATCCTTGGGAAGAGGCCTCGGCAGCCAAGACACCGCTCTCGCCCAGCTCCCTACACACCGCCATGGGCGCAACGCGTCGTGATGAAAAGACTCGGCGTCGTCGACAACGAGAACAAGGTTGAAGAGCAGGACCTCTTGCGGCTTACCAATGTCTACGGGCCGCAGTCCGACGGCGACAAAATCCTTTTTCTAGAGGAGCTGCTGGTGGTTGGTGACTTTAACTTGTTGGCCTCGGAGGGTGACAAGAACAATGGCAATGTGAATCGCAGACTGATTAACAAGTTTAGACAAACTATTGACGTTCTGGAGCTCCGTGAAGTTTATCAGTTCAGGCGCCGGTATACTTGGAGCAGTGAACAAGAGCAGCCAACCTTAACCAAAATTGATAAAGTGTTGATTAATGGGGAATGGGAGGAAATTTTCCAGGATGCCCATTTGCAAGCTCTCAGTTCGTCCGCTTCCGACCACTGCCCTCTGCTTTTGGCTTGCGATAACATGATGCACCGTCCGAGAAAGTATAAGTTTGAGTCTTTCTGGACCAAGCTAGATGGGTTTGAGGAAGTGGTCCGGCAAGCTTGGGCGGCTGCGCCGTCGGGCTCCAACTCTGTTTCCTCCCTCCATCTCAAGTTGAAATCTACTGCCACATCTCTTCGTTCGTGGGGGGCTAGGCGAATCAACGAACTTCGGCAGCAGCTCGCAGTGGCTCATGAAATTATTCTTCAGCTGGACAAGGCCCAGGACGACCGGCTTCTCTCGGCAGAGGAGCGATCGCTGCGTGCTACCTTGAAGGGACGATGCCTTGCTCTCGCCTCCCTGGAGCACATTAGGCTCCGTCAGCGAGCCAGGTTGTTATTCCTCAAGCATAGCGGCACAACGGCACAATTTTTTCGCCTTAAGATCAATGCACGTCGAAGAAAGAAAGCAATTCCTACCCTCTGTCATGATGGTGTCTATGCTACCACTGAAGAAGATAAGCTACAGGCTGCATACAACTATTTCCTCAATATTTTGGGGACGCGTGGAGAGCGAATTCCCAGCACCTACATCTCTTTCGCCAAGATCCTGACCAAAATTCTAGCACTTCGTCTCGCCCCGAGAATGGATGAATTGATCGGGCCTGCACAGTCAGCCTTTATTAGGCGCAGAAGAATACAAGAGAACTTCCTCTACGTTCATGGTGTAGTTAAAAAGTTGCATCGGTCCAAAACGCCTGCCATGCTGTTGAAGATTGACATCGCAAAAGCTTTTGATACGGTATCTTGGGAATTCCTTTTGGAGCTGCTTCGACATTTGGGCTTCGGCGCTCGATGGCGTGACTGTGTTTCTGCTTTGCTTTTCACTTCGTCAACCACCGTCACCATCAATGGTAGAGACACTCAAAGGATCAAGCTAGCTCGGGGACTCAGGCAAGGGGATCCACTCTCGCCGTTGCTTTTCGTCATTGTGATGGAGGCATTTGCGGCTCTCTGCTCCACGGCAGCGAGCCGTGGCGTGCTTTCCCCACTTGCTACGGGTTCCTTGCCACTTCGCGCCTCAATCTATGCGGATGATGCCATCATCTTCTTCCATCCTTCTCGGCGGGACGCGCTGATGATCCACTTCATACTCAAGTTGATGGGTGACGCCACCGGCTTGGTTTCCAACCTAGCCAAGAGCTCGTTGACCCTGATCCATTGCACTGATGTTCAAATTGAAGAGGTCACAGAGGTGTTGACATGCCCAATCAAGCAATTGCCGATTGTTTACTTGGGGCTGCCGCTTTCTGTGCGTAAACCGACGAAAGTGCAAATCCAACTGATGATGGATAGGCTTGCCAAAAATTTGGCTGGCTGGAAGCCCAAGCTTTTATCTCCAGATGCCCGTCTAGCCCTGATCAAGCATGTGTTAATGGCGCTCCCACTCTACTTCATGTCCGTCTTGGAACTACCAGCCTGGGCGATCAACGAAATTGAGAAGAAATGCTGGGGTTTCATTTGGAAGGGTGATGAAGATGCTGCGGGCTCTTGCAGCTTGGTGGCTTGGGAGAAGCTTTGCCTCTCTATCGAGCAGGGGGGACTAGGGATCAGAAACCTACGCCTAATGGGAATTGCGCTTCGCACTCGGTGGATTTGGCTGTGCCGCGCTGAGCCAGAGTGTTCTTGGACGCGCATTGCACCTCTAGCTGACAGAAAGTCACTGCACTGCTTTGCCGCTAGTAGCAAAGTACTGCTGGGGAACGGAGCCTCTACCTCGTTTTGGTGCGATAGCTTGTTGCCAGACGGAGGATCAGTGCAGTACAGATTCCCAATTCTTTTCTCCTTCGTCAAGCTGAGTGACATCACAGTGGCTGCCGCTCTCTGCAACAACTCCTAG

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Protein seq

MGRIGASSAQTESTAAGENFKAHDLSRFSRLGLGWRSALHPRVAQLCSLASHSVLQLPPPCLRPTPPATSILGKRPRQPRHRSRPAPYTPPWAQRVVMKRLGVVDNENKVEEQDLLRLTNVYGPQSDGDKILFLEELLVVGDFNLLASEGDKNNGNVNRRLINKFRQTIDVLELREVYQFRRRYTWSSEQEQPTLTKIDKVLINGEWEEIFQDAHLQALSSSASDHCPLLLACDNMMHRPRKYKFESFWTKLDGFEEVVRQAWAAAPSGSNSVSSLHLKLKSTATSLRSWGARRINELRQQLAVAHEIILQLDKAQDDRLLSAEERSLRATLKGRCLALASLEHIRLRQRARLLFLKHSGTTAQFFRLKINARRRKKAIPTLCHDGVYATTEEDKLQAAYNYFLNILGTRGERIPSTYISFAKILTKILALRLAPRMDELIGPAQSAFIRRRRIQENFLYVHGVVKKLHRSKTPAMLLKIDIAKAFDTVSWEFLLELLRHLGFGARWRDCVSALLFTSSTTVTINGRDTQRIKLARGLRQGDPLSPLLFVIVMEAFAALCSTAASRGVLSPLATGSLPLRASIYADDAIIFFHPSRRDALMIHFILKLMGDATGLVSNLAKSSLTLIHCTDVQIEEVTEVLTCPIKQLPIVYLGLPLSVRKPTKVQIQLMMDRLAKNLAGWKPKLLSPDARLALIKHVLMALPLYFMSVLELPAWAINEIEKKCWGFIWKGDEDAAGSCSLVAWEKLCLSIEQGGLGIRNLRLMGIALRTRWIWLCRAEPECSWTRIAPLADRKSLHCFAASSKVLLGNGASTSFWCDSLLPDGGSVQYRFPILFSFVKLSDITVAAALCNNS

Function LINE-1 reverse transcriptase homolog [UniProtKB/Swiss-Prot:P08548]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os05g01420 LOC_Os05g01420.1 Chr05 245092 248165 - MSU_osa1r7
CDS seq

ATGGGCCGGATTGGCGCTTCTTCGGCCCAAACCGAGTCTACTGCCGCCGGAGAGAACTTCAAGGCCCACGACCTTTCCCGCTTCAGCCGTCTGGGTCTGGGCTGGAGGAGCGCACTTCACCCTCGAGTGGCCCAGCTTTGCAGCCTGGCCAGCCACTCAGTGCTTCAGTTGCCGCCGCCATGTCTGAGGCCGACTCCGCCGGCGACATCCATCCTTGGGAAGAGGCCTCGGCAGCCAAGACACCGCTCTCGCCCAGCTCCCTACACACCGCCATGGGCGCAACGCGTCGTGATGAAAAGACTCGGCGTCGTCGACAACGAGAACAAGGTTGAAGAGCAGGACCTCTTGCGGCTTACCAATGTCTACGGGCCGCAGTCCGACGGCGACAAAATCCTTTTTCTAGAGGAGCTGCTGGTGGTTGGTGACTTTAACTTGTTGGCCTCGGAGGGTGACAAGAACAATGGCAATGTGAATCGCAGACTGATTAACAAGTTTAGACAAACTATTGACGTTCTGGAGCTCCGTGAAGTTTATCAGTTCAGGCGCCGGTATACTTGGAGCAGTGAACAAGAGCAGCCAACCTTAACCAAAATTGATAAAGTGTTGATTAATGGGGAATGGGAGGAAATTTTCCAGGATGCCCATTTGCAAGCTCTCAGTTCGTCCGCTTCCGACCACTGCCCTCTGCTTTTGGCTTGCGATAACATGATGCACCGTCCGAGAAAGTATAAGTTTGAGTCTTTCTGGACCAAGCTAGATGGGTTTGAGGAAGTGGTCCGGCAAGCTTGGGCGGCTGCGCCGTCGGGCTCCAACTCTGTTTCCTCCCTCCATCTCAAGTTGAAATCTACTGCCACATCTCTTCGTTCGTGGGGGGCTAGGCGAATCAACGAACTTCGGCAGCAGCTCGCAGTGGCTCATGAAATTATTCTTCAGCTGGACAAGGCCCAGGACGACCGGCTTCTCTCGGCAGAGGAGCGATCGCTGCGTGCTACCTTGAAGGGACGATGCCTTGCTCTCGCCTCCCTGGAGCACATTAGGCTCCGTCAGCGAGCCAGGTTGTTATTCCTCAAGCATAGCGGCACAACGGCACAATTTTTTCGCCTTAAGATCAATGCACGTCGAAGAAAGAAAGCAATTCCTACCCTCTGTCATGATGGTGTCTATGCTACCACTGAAGAAGATAAGCTACAGGCTGCATACAACTATTTCCTCAATATTTTGGGGACGCGTGGAGAGCGAATTCCCAGCACCTACATCTCTTTCGCCAAGATCCTGACCAAAATTCTAGCACTTCGTCTCGCCCCGAGAATGGATGAATTGATCGGGCCTGCACAGTCAGCCTTTATTAGGCGCAGAAGAATACAAGAGAACTTCCTCTACGTTCATGGTGTAGTTAAAAAGTTGCATCGGTCCAAAACGCCTGCCATGCTGTTGAAGATTGACATCGCAAAAGCTTTTGATACGGTATCTTGGGAATTCCTTTTGGAGCTGCTTCGACATTTGGGCTTCGGCGCTCGATGGCGTGACTGTGTTTCTGCTTTGCTTTTCACTTCGTCAACCACCGTCACCATCAATGGTAGAGACACTCAAAGGATCAAGCTAGCTCGGGGACTCAGGCAAGGGGATCCACTCTCGCCGTTGCTTTTCGTCATTGTGATGGAGGCATTTGCGGCTCTCTGCTCCACGGCAGCGAGCCGTGGCGTGCTTTCCCCACTTGCTACGGGTTCCTTGCCACTTCGCGCCTCAATCTATGCGGATGATGCCATCATCTTCTTCCATCCTTCTCGGCGGGACGCGCTGATGATCCACTTCATACTCAAGTTGATGGGTGACGCCACCGGCTTGGTTTCCAACCTAGCCAAGAGCTCGTTGACCCTGATCCATTGCACTGATGTTCAAATTGAAGAGGTCACAGAGGTGTTGACATGCCCAATCAAGCAATTGCCGATTGTTTACTTGGGGCTGCCGCTTTCTGTGCGTAAACCGACGAAAGTGCAAATCCAACTGATGATGGATAGGCTTGCCAAAAATTTGGCTGGCTGGAAGCCCAAGCTTTTATCTCCAGATGCCCGTCTAGCCCTGATCAAGCATGTGTTAATGGCGCTCCCACTCTACTTCATGTCCGTCTTGGAACTACCAGCCTGGGCGATCAACGAAATTGAGAAGAAATGCTGGGGTTTCATTTGGAAGGGTGATGAAGATGCTGCGGGCTCTTGCAGCTTGGTGGCTTGGGAGAAGCTTTGCCTCTCTATCGAGCAGGGGGGACTAGGGATCAGAAACCTACGCCTAATGGGAATTGCGCTTCGCACTCGGTGGATTTGGCTGTGCCGCGCTGAGCCAGAGTGTTCTTGGACGCGCATTGCACCTCTAGCTGACAGAAAGTCACTGCACTGCTTTGCCGCTAGTAGCAAAGTACTGCTGGGGAACGGAGCCTCTACCTCGTTTTGGTGCGATAGCTTGTTGCCAGACGGAGGATCAGTGCAGTACAGATTCCCAATTCTTTTCTCCTTCGTCAAGCTGAGTGACATCACAGTGGCTGCCGCTCTCTGCAACAACTCCTAG

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Protein seq

MGRIGASSAQTESTAAGENFKAHDLSRFSRLGLGWRSALHPRVAQLCSLASHSVLQLPPPCLRPTPPATSILGKRPRQPRHRSRPAPYTPPWAQRVVMKRLGVVDNENKVEEQDLLRLTNVYGPQSDGDKILFLEELLVVGDFNLLASEGDKNNGNVNRRLINKFRQTIDVLELREVYQFRRRYTWSSEQEQPTLTKIDKVLINGEWEEIFQDAHLQALSSSASDHCPLLLACDNMMHRPRKYKFESFWTKLDGFEEVVRQAWAAAPSGSNSVSSLHLKLKSTATSLRSWGARRINELRQQLAVAHEIILQLDKAQDDRLLSAEERSLRATLKGRCLALASLEHIRLRQRARLLFLKHSGTTAQFFRLKINARRRKKAIPTLCHDGVYATTEEDKLQAAYNYFLNILGTRGERIPSTYISFAKILTKILALRLAPRMDELIGPAQSAFIRRRRIQENFLYVHGVVKKLHRSKTPAMLLKIDIAKAFDTVSWEFLLELLRHLGFGARWRDCVSALLFTSSTTVTINGRDTQRIKLARGLRQGDPLSPLLFVIVMEAFAALCSTAASRGVLSPLATGSLPLRASIYADDAIIFFHPSRRDALMIHFILKLMGDATGLVSNLAKSSLTLIHCTDVQIEEVTEVLTCPIKQLPIVYLGLPLSVRKPTKVQIQLMMDRLAKNLAGWKPKLLSPDARLALIKHVLMALPLYFMSVLELPAWAINEIEKKCWGFIWKGDEDAAGSCSLVAWEKLCLSIEQGGLGIRNLRLMGIALRTRWIWLCRAEPECSWTRIAPLADRKSLHCFAASSKVLLGNGASTSFWCDSLLPDGGSVQYRFPILFSFVKLSDITVAAALCNNS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0003430 SBH 0.090104 0.030902 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0003500 RBH 0.0036095 0.119464 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0003600 RBH 0 0.0565065 0.0046315
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0000300 RBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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