Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_04G0556700 | OGI:04054070 | 15/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr04:36544818-36546527 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATCCATGCTGAACACGAGAAACTGGAAACGAAAGCTGTAGTTTAGAATCTCCTCTGAACCAGAAAGTCTTGAGCTTCTTGAATTTTTGTACTGAGCAAGAAAGTTGAGACATCTTTTTACATATTGTTCTTGCCCAAATGATCTGCACCCCTTCAGTGTAGGCATCCCAAAGGTACTCTAGAGCTGCATTAAGATCAAAATCATGTGGACCATATAGGATTGATCTTGTAAGATGAGAAGCAACAGTTAAGGGAATGCCAGATCGCTCAGTTGTTTCAACTACCATCAGCTCTAAATATAACAACACTTTGTTATTTGTATCATGAGTTAGTGCTGTCCAGCCAAGTATTTCCTTATTACCTCCCACACCGAATTCTACATTATCACTGAAAGGATGCACATGATGCAAACATCTCCAAGGCCCTTCAGTAAAGATGACAAAACATCCATGAATTTGTCTCTCTACAGGAACATGCAGCAGCAGTAACAAGACAACTCTGATTTGCTTGTCAATCTTCGGCTTAAACAATTTTACTTGCAGCAGATTGTGATAACTAATACCAAGTTCATGCATCCCATAGATTTCACGGAAAATTCAGCTTCTCTGATTTACCAAGCCCCACTGTTCCTTCCAAGCAGATTGGTTAATTGTAACCCCAATTTCCCAGGACCAACAGTGCTCAAGCTGAATCATAGTATGTTTGGAATCTGAATTATTTGGTGGAGGCCATGGTAACATCAAATGTACTCGTGCCCAATGCCTGACTGTGAGCAACATTTCTGTGGACAAAATTGCAAAATCAGTGAGTAATAATGCAAGGTAGCTTATCTGAGTTGGTGGTGGCCATGGTGGCACCAAGTGTTCCACTGTCCCACAAAAATTGAATCCCGGCCATGGTGAAGGCCTTAAGTCTCTGCCTTTAATCACTCCATCTAACCAAGGAGGTGGCCATGGATTAACATCAAGAGGGTTTGTAGGCATCAATGCCATGTTGCCATGCCCAAGGCACTGCACCAAACACTTAGTGGGCATTGGTATGTTCCACTTGATGTTAGCCATGATACGTGATGAGAAAAAGTCCATGAACTGAACGGAGGTTGGATCGTCCTTGAATGCATCTGTCCAGGTCTGGAACACAACCATAGCTTGACCGGTGTCACCAATGGCATCGAGGACAACCGTCAAACACTTGGCGTGCATCACCTTGGTATGGTCAGAGGTGTCGCTGTACGTGGCACCAATGGCTTTCTGAGCAGTTACCAACTCCATAGAGGCAGTGGCTGCGCTGGTGTAGGTAACCTCCGCAACCATGGTGAGATCCGGCTCAGTGTCGGGACTGGAGCATTTCATCAAACATGTGGTGGGCGTGACCTTGGATGAGTCCTTGGTGACGATGCAGGGGTCATGAACCTTGTCCTCGCCATCCCCAAGGTCCAGGGCAATTGTCGGAGCAGTCTCCTTGTCGATGTGGCCTGAGCTCGACGTCGCCCAAGGATGATCGTCATTGGAGCACTTCATCGAACATGTGGTGGGCGTCGAAGAAGGTGGCGCCTGGAGTGGAGAATGTGATGCAGCCGTGAGGACAGCAGTGGTCGCCTTGATAGAGGCACCCATCTCCTCGAAGAACTTGTTCCTATTAGCATCTATCTCGTCCAACTTCTTCAAAATTCGATCAATCTTCTCATCACACCTACGCTTGGCCTCCAT
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| CDS seq | ATGGAGGCCAAGCGTAGGTGTGATGAGAAGATTGATCGAATTTTGAAGAAGTTGGACGAGATAGATGCTAATAGGAACAAGTTCTTCGAGGAGATGGGTGCCTCTATCAAGGCGACCACTGCTGTCCTCACGGCTGCATCACATTCTCCACTCCAGGCGCCACCTTCTTCGACGCCCACCACATGTTCGATGAAGTGCTCCAATGACGATCATCCTTGGGCGACGTCGAGCTCAGGCCACATCGACAAGGAGACTGCTCCGACAATTGCCCTGGACCTTGGGGATGGCGAGGACAAGGTTCATGACCCCTGCATCGTCACCAAGGACTCATCCAAGGTCACGCCCACCACATGTTTGATGAAATGCTCCAGTCCCGACACTGAGCCGGATCTCACCATGGTTGCGGAGGTTACCTACACCAGCGCAGCCACTGCCTCTATGGAGTTGGTAACTGCTCAGAAAGCCATTGGTGCCACGTACAGCGACACCTCTGACCATACCAAGGTGATGCACGCCAAGTGTTTGACGGTTGTCCTCGATGCCATTGGTGACACCGGTCAAGCTATGGTTGTGTTCCAGACCTGGACAGATGCATTCAAGGACGATCCAACCTCCGTTCAGTTCATGGACTTTTTCTCATCACGTATCATGGCTAACATCAAGTGGAACATACCAATGCCCACTAAGTGTTTGGTGCAGTGCCTTGGGCATGGCAACATGGCATTGATGCCTACAAACCCTCTTGATGTTAATCCATGGCCACCTCCTTGGTTAGATGGAGTGATTAAAGGCAGAGACTTAAGGCCTTCACCATGGCCGGGATTCAATTTTTGTGGGACAGTGGAACACTTGGTGCCACCATGGCCACCACCAACTCAGATAAGCTACCTTGCATTATTACTCACTGATTTTGCAATTTTGTCCACAGAAATGTTGCTCACAGTCAGGCATTGGGCACGAGTACATTTGATGTTACCATGGCCTCCACCAAATAATTCAGATTCCAAACATACTATGATTCAGCTTGAGCACTGTTGGTCCTGGGAAATTGGGGTTACAATTAACCAATCTGCTTGGAAGGAACATGATAATGTAGAATTCGGTGTGGGAGGTAATAAGGAAATACTTGGCTGGACAGCACTAACTCATGATACAAATAACAAAGTGTTGTTATATTTAGAGCTGATGGTAGTTGAAACAACTGAGCGATCTGGCATTCCCTTAACTGTTGCTTCTCATCTTACAAGATCAATCCTATATGGTCCACATGATTTTGATCTTAATGCAGCTCTAGAGTACCTTTGGGATGCCTACACTGAAGGGGTGCAGATCATTTGGGCAAGAACAATATGTAAAAAGATGTCTCAACTTTCTTGCTCAGTACAAAAATTCAAGAAGCTCAAGACTTTCTGGTTCAGAGGAGATTCTAAACTACAGCTTTCGTTTCCAGTTTCTCGTGTTCAGCATGGATAG
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| Protein seq | MEAKRRCDEKIDRILKKLDEIDANRNKFFEEMGASIKATTAVLTAASHSPLQAPPSSTPTTCSMKCSNDDHPWATSSSGHIDKETAPTIALDLGDGEDKVHDPCIVTKDSSKVTPTTCLMKCSSPDTEPDLTMVAEVTYTSAATASMELVTAQKAIGATYSDTSDHTKVMHAKCLTVVLDAIGDTGQAMVVFQTWTDAFKDDPTSVQFMDFFSSRIMANIKWNIPMPTKCLVQCLGHGNMALMPTNPLDVNPWPPPWLDGVIKGRDLRPSPWPGFNFCGTVEHLVPPWPPPTQISYLALLLTDFAILSTEMLLTVRHWARVHLMLPWPPPNNSDSKHTMIQLEHCWSWEIGVTINQSAWKEHDNVEFGVGGNKEILGWTALTHDTNNKVLLYLELMVVETTERSGIPLTVASHLTRSILYGPHDFDLNAALEYLWDAYTEGVQIIWARTICKKMSQLSCSVQKFKKLKTFWFRGDSKLQLSFPVSRVQHG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_04G0556700 | OsZS97_04T0556700.1 | Chr04 | 36544818 | 36546527 | - | makerRMon | ||
| CDS seq | ATGGAGGCCAAGCGTAGGTGTGATGAGAAGATTGATCGAATTTTGAAGAAGTTGGACGAGATAGATGCTAATAGGAACAAGTTCTTCGAGGAGATGGGTGCCTCTATCAAGGCGACCACTGCTGTCCTCACGGCTGCATCACATTCTCCACTCCAGGCGCCACCTTCTTCGACGCCCACCACATGTTCGATGAAGTGCTCCAATGACGATCATCCTTGGGCGACGTCGAGCTCAGGCCACATCGACAAGGAGACTGCTCCGACAATTGCCCTGGACCTTGGGGATGGCGAGGACAAGGTTCATGACCCCTGCATCGTCACCAAGGACTCATCCAAGGTCACGCCCACCACATGTTTGATGAAATGCTCCAGTCCCGACACTGAGCCGGATCTCACCATGGTTGCGGAGGTTACCTACACCAGCGCAGCCACTGCCTCTATGGAGTTGGTAACTGCTCAGAAAGCCATTGGTGCCACGTACAGCGACACCTCTGACCATACCAAGGTGATGCACGCCAAGTGTTTGACGGTTGTCCTCGATGCCATTGGTGACACCGGTCAAGCTATGGTTGTGTTCCAGACCTGGACAGATGCATTCAAGGACGATCCAACCTCCGTTCAGTTCATGGACTTTTTCTCATCACGTATCATGGCTAACATCAAGTGGAACATACCAATGCCCACTAAGTGTTTGGTGCAGTGCCTTGGGCATGGCAACATGGCATTGATGCCTACAAACCCTCTTGATGTTAATCCATGGCCACCTCCTTGGTTAGATGGAGTGATTAAAGGCAGAGACTTAAGGCCTTCACCATGGCCGGGATTCAATTTTTGTGGGACAGTGGAACACTTGGTGCCACCATGGCCACCACCAACTCAGATAAGCTACCTTGCATTATTACTCACTGATTTTGCAATTTTGTCCACAGAAATGTTGCTCACAGTCAGGCATTGGGCACGAGTACATTTGATGTTACCATGGCCTCCACCAAATAATTCAGATTCCAAACATACTATGATTCAGCTTGAGCACTGTTGGTCCTGGGAAATTGGGGTTACAATTAACCAATCTGCTTGGAAGGAACATGATAATGTAGAATTCGGTGTGGGAGGTAATAAGGAAATACTTGGCTGGACAGCACTAACTCATGATACAAATAACAAAGTGTTGTTATATTTAGAGCTGATGGTAGTTGAAACAACTGAGCGATCTGGCATTCCCTTAACTGTTGCTTCTCATCTTACAAGATCAATCCTATATGGTCCACATGATTTTGATCTTAATGCAGCTCTAGAGTACCTTTGGGATGCCTACACTGAAGGGGTGCAGATCATTTGGGCAAGAACAATATGTAAAAAGATGTCTCAACTTTCTTGCTCAGTACAAAAATTCAAGAAGCTCAAGACTTTCTGGTTCAGAGGAGATTCTAAACTACAGCTTTCGTTTCCAGTTTCTCGTGTTCAGCATGGATAG
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| Protein seq | MEAKRRCDEKIDRILKKLDEIDANRNKFFEEMGASIKATTAVLTAASHSPLQAPPSSTPTTCSMKCSNDDHPWATSSSGHIDKETAPTIALDLGDGEDKVHDPCIVTKDSSKVTPTTCLMKCSSPDTEPDLTMVAEVTYTSAATASMELVTAQKAIGATYSDTSDHTKVMHAKCLTVVLDAIGDTGQAMVVFQTWTDAFKDDPTSVQFMDFFSSRIMANIKWNIPMPTKCLVQCLGHGNMALMPTNPLDVNPWPPPWLDGVIKGRDLRPSPWPGFNFCGTVEHLVPPWPPPTQISYLALLLTDFAILSTEMLLTVRHWARVHLMLPWPPPNNSDSKHTMIQLEHCWSWEIGVTINQSAWKEHDNVEFGVGGNKEILGWTALTHDTNNKVLLYLELMVVETTERSGIPLTVASHLTRSILYGPHDFDLNAALEYLWDAYTEGVQIIWARTICKKMSQLSCSVQKFKKLKTFWFRGDSKLQLSFPVSRVQHG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.2615715 | 1.1435785 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009510 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010060 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031930 | SBH | 0.0 | 1.132535 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0551000 | RBH | 0.4183965 | 0.663911 | 0.218637 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030560 | RBH | 0.063298 | 0.052641 | 0.322914 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031040 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030830 | RBH | 0.0 | 1.502636 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030970 | RBH | 0.203248 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009830 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031010 | RBH | 0.110489 | 0.000000 | 0.250066 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030730 | RBH | 0.0 | 0.0 | 0.0 |
