Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0031040 | OGI:04054070 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:36229076-36231964 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttattgtctggccctgaccaatcaatcgatcaatcatatgcatgaatgcaaccgaactgggatcgatcatctaagctagttcatcgacaaatgaagaacgtaATatatataatatatgggcgagtttatgggcaacccgagtgtcacaaaacattaaaatctttgcttggcagttaattagctagagaaggtcttgccacgatgggtaattatattggaagatgcgcagattggaagcagatgcaacttattgccgtatttgttgacaagctagctaggttacgaagacatgtttcatgctgtcgtctcctgtacccgagctgctgcactacgatctggtagctcccaaacgtcataccattgcgtacatgatgtttaggagctaccagatgatagacaattggttaggtctgggccggattggctcctcatgcatcatcctggagtcaatcaaaccagaggtacagggcaaaattcctcctactctgttagagacctcttctcttaacaaagcaacaacaatctctagtacaactcacaaatacacaactagttgcttgagctgaaactcaagaagaagaggaaggagatacaggctttagaaggttctagaagctaaggtgggggactggaggaaggggaagaggtagggaaggaaatcgacaaggagccaaccggcctccaggtcgctgccgccgccgctcgcctagccaccaaggccagccgtcgccgttgcctttcttctgttcccaaatcacccaagtgcttgctgttgctgcttatatatgttgctagttgtgcttgcctgggcttggactgaaacatggctaacctagcccatatgcagcacaactgtgttgctaacaatcccctctccttaacattcggcttgtcctcaagccgatgcaaattgttgccactgccaccaggatcccatgtgagttgcacaaagaacgggatagtagaatcaccacattgtgctgactcgtagatctccttgatataattctccaataattttgcatttgatctgaaatgggcattgacgctccaaccaagttccaaagtgcagcttagaacaatcttcaccccagatttcgcaagcatttctgtagaaactattttccgaactagatgatctgaaatatagtaccaactgagatcgtcaataccaagctctagctgctcttgctctaacaatagctcatatgtttgtgcaggcatgcaccaccaaagaaacagtttagacatgcatctaaacctttgaagctctatccatgctgaacacgagaaactggaaactgaaagctgtagtttagaatctcctctgaaccagaaagtcttgagcttcttgaatttttgtactgagcaagaaagttgagacatctttttacatattgttcttgcccaaatgatctgcaccccttcagtgtaggcatcccaaaggtactctagagctgcattaagatcaaaatcatgtggaccatataggattgatcttgtaagatgagaagcaacagttaagggaatgccagatcgctcagttgtttcaactaccatcagctctaaatataacaacactttgttatttgtatcatgagttagtgctgtccagccaagtatttccttattacctcccacaccgaattctccattatcactgaaaggatgcacatgatgcaaacatctccaaggcccttcagtaaagatgacaaaacatccatgaatttgtctctctacaggaacatgcagcagcagtaacaagacaactctgatttgcttgtcaatcttcggcttaaacaattttacttgcagcagattgtgataactaataccaagttcatgcatcccatagatttcactgaaaatacagcttctctgatttaccaagtcccactgttccttccaagcagattggttaattgtaaacccaatttcccaggaccaacagtgctcaagctgaatcatagtatgtttggaatctgaattatttggtggaggccatggtaacatcaaatgtactcgtgcccaatgcctgactgtgagcaacatttctgtggacAaaattgcaaaatcagtgagtaataatgcaaggtagcttatctgagttggtggtggccatggtggcaccaagtgttccactgtcccacaaaaattgaatcccagccatggtgaaggccttaagtctctgcctttaatcactccatctaaccaaggaggtggccatggattaacatcaagagggtttgtaggcatcaatgccatgttgccatgcccaaggcactgcaccaaacacttagtgggcattggtatgttccacttgatgttagccatcatacttgatgagaaaaagtccatgaactgaacggaggttggatcgtccttgaatgcatctgtccaggtctggaacacaaccatagcttgaccggtgtcaccaatggcatcgaggacaaccgtcaaacacttggcgtgcatcaccttggtatggtcagaggtgtcgctgtacgtggcaccaatggctttctgagcagttaccagctccatagaggcagtggctgcgctggcgtaggtaacctccgcaaccatggtgagatccggctcagtgtcgggactggagcatttcaacgaacacgtggtgggcgtgaccttggatgagtccttggtgatgatgcaggggtcatgaaccttgtcctcgccatccccaaggtccagggaaattgtcggagcagtctccttgtcgatgtggcctgagctcgacgtcgcccaaggatgatcgtcattggagcacttcatcgaacatgtggtgggcgtcgaagaaggtggcgcctggagtggagaatgtgatgcagccgtgaggacagcagtggtcgccttgatagaggcaaccat
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| CDS seq | atggttgcctctatcaaggcgaccactgctgtcctcacggctgcatcacattctccactccaggcgccaccttcttcgacgcccaccacatgttcgatgaagtgctccaatgacgatcatccttgggcgacgtcgagctcaggccacatcgacaaggagactgctccgacaatttccctggaccttggggatggcgaggacaaggttcatgacccctgcatcatcaccaaggactcatccaaggtcacgcccaccacgtgttcgttgaaatgctccagtcccgacactgagccggatctcaccatggttgcggaggttacctacgccagcgcagccactgcctctatggagctggtaactgctcagaaagccattggtgccacgtacagcgacacctctgaccataccaaggtgatgcacgccaagtgtttgacggttgtcctcgatgccattggtgacaccggtcaagctatggttgtgttccagacctggacagatgcattcaaggacgatccaacctccgttcagttcatggactttttctcatcaagtatgatggctaacatcaagtggaacataccaatgcccactaagtgtttggtgcagtgccttgggcatggcaacatggcattgatgcctacaaaccctcttgatgttaatccatggccacctccttggttagatggagtgattaaaggcagagacttaaggccttcaccatggctgggattcaatttttgtgggacagtggaacacttggtgccaccatggccaccaccaactcagataagctaccttgcattattactcactgattttgcaatttTgtccacagaaatgttgctcacagtcaggcattgggcacgagtacatttgatgttaccatggcctccaccaaataattcagattccaaacatactatgattcagcttgagcactgttggtcctgggaaattgggtttacaattaaccaatctgcttggaaggaacagtgggacttgagagacaaattcatggatgttttgtcatctttactgaagggccttggagatgtttgcatcatgtgcatcctttcagtgataatggagaattcggtgtgggagctgatggtagttgaaacaactgagcgatctggcattcccttaactgttgcttctcatcttacaagatcaatcctatatggtccacatgattttgatcttaatgcagctctagagtacctttgggatgcctacactgaaggggtgcagatcatttgggcaagaacaatatgtaaaaagatgtctcaactttcttgctcagtacaaaaattcaagaagctcaagactttctggttcagaggagattctaaactacagctttcagtttccagtttctcgtgttcagcatggatagagcttcaaagggccagacaataa
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| Protein seq | MVASIKATTAVLTAASHSPLQAPPSSTPTTCSMKCSNDDHPWATSSSGHIDKETAPTISLDLGDGEDKVHDPCIITKDSSKVTPTTCSLKCSSPDTEPDLTMVAEVTYASAATASMELVTAQKAIGATYSDTSDHTKVMHAKCLTVVLDAIGDTGQAMVVFQTWTDAFKDDPTSVQFMDFFSSSMMANIKWNIPMPTKCLVQCLGHGNMALMPTNPLDVNPWPPPWLDGVIKGRDLRPSPWLGFNFCGTVEHLVPPWPPPTQISYLALLLTDFAILSTEMLLTVRHWARVHLMLPWPPPNNSDSKHTMIQLEHCWSWEIGFTINQSAWKEQWDLRDKFMDVLSSLLKGLGDVCIMCILSVIMENSVWELMVVETTERSGIPLTVASHLTRSILYGPHDFDLNAALEYLWDAYTEGVQIIWARTICKKMSQLSCSVQKFKKLKTFWFRGDSKLQLSVSSFSCSAWIELQRARQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0031040 | OsLima_04g0031040.01 | Chr04 | 36229076 | 36231964 | - | NAM | ||
| CDS seq | atggttgcctctatcaaggcgaccactgctgtcctcacggctgcatcacattctccactccaggcgccaccttcttcgacgcccaccacatgttcgatgaagtgctccaatgacgatcatccttgggcgacgtcgagctcaggccacatcgacaaggagactgctccgacaatttccctggaccttggggatggcgaggacaaggttcatgacccctgcatcatcaccaaggactcatccaaggtcacgcccaccacgtgttcgttgaaatgctccagtcccgacactgagccggatctcaccatggttgcggaggttacctacgccagcgcagccactgcctctatggagctggtaactgctcagaaagccattggtgccacgtacagcgacacctctgaccataccaaggtgatgcacgccaagtgtttgacggttgtcctcgatgccattggtgacaccggtcaagctatggttgtgttccagacctggacagatgcattcaaggacgatccaacctccgttcagttcatggactttttctcatcaagtatgatggctaacatcaagtggaacataccaatgcccactaagtgtttggtgcagtgccttgggcatggcaacatggcattgatgcctacaaaccctcttgatgttaatccatggccacctccttggttagatggagtgattaaaggcagagacttaaggccttcaccatggctgggattcaatttttgtgggacagtggaacacttggtgccaccatggccaccaccaactcagataagctaccttgcattattactcactgattttgcaatttTgtccacagaaatgttgctcacagtcaggcattgggcacgagtacatttgatgttaccatggcctccaccaaataattcagattccaaacatactatgattcagcttgagcactgttggtcctgggaaattgggtttacaattaaccaatctgcttggaaggaacagtgggacttgagagacaaattcatggatgttttgtcatctttactgaagggccttggagatgtttgcatcatgtgcatcctttcagtgataatggagaattcggtgtgggagctgatggtagttgaaacaactgagcgatctggcattcccttaactgttgcttctcatcttacaagatcaatcctatatggtccacatgattttgatcttaatgcagctctagagtacctttgggatgcctacactgaaggggtgcagatcatttgggcaagaacaatatgtaaaaagatgtctcaactttcttgctcagtacaaaaattcaagaagctcaagactttctggttcagaggagattctaaactacagctttcagtttccagtttctcgtgttcagcatggatagagcttcaaagggccagacaataa
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| Protein seq | MVASIKATTAVLTAASHSPLQAPPSSTPTTCSMKCSNDDHPWATSSSGHIDKETAPTISLDLGDGEDKVHDPCIITKDSSKVTPTTCSLKCSSPDTEPDLTMVAEVTYASAATASMELVTAQKAIGATYSDTSDHTKVMHAKCLTVVLDAIGDTGQAMVVFQTWTDAFKDDPTSVQFMDFFSSSMMANIKWNIPMPTKCLVQCLGHGNMALMPTNPLDVNPWPPPWLDGVIKGRDLRPSPWLGFNFCGTVEHLVPPWPPPTQISYLALLLTDFAILSTEMLLTVRHWARVHLMLPWPPPNNSDSKHTMIQLEHCWSWEIGFTINQSAWKEQWDLRDKFMDVLSSLLKGLGDVCIMCILSVIMENSVWELMVVETTERSGIPLTVASHLTRSILYGPHDFDLNAALEYLWDAYTEGVQIIWARTICKKMSQLSCSVQKFKKLKTFWFRGDSKLQLSVSSFSCSAWIELQRARQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009510 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010260 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009730 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031930 | RBH | 0.0 | 1.132535 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0551000 | RBH | 0.4183965 | 0.663911 | 0.218637 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030560 | RBH | 0.063298 | 0.052641 | 0.322914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0556700 | RBH | 0.2615715 | 1.1435785 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030830 | RBH | 0.0 | 1.502636 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030970 | RBH | 0.203248 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009830 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031010 | RBH | 0.110489 | 0.000000 | 0.250066 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030730 | RBH | 0.0 | 0.0 | 0.0 |
