Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_03G0143800 | OGI:03022790 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr03:8666023-8667557 | ||||||||
| Gene Symbol | UBL40-2, UbL40-2, OsUbL40-2, UbL402 | ||||||||||
| DNA seq | TCTATCTTTGCAGTAAAAGCGCTCGGTTAATGGGTAGTAGTATTTTGGCTTATCGGTGACTTGACGGGCGCGTTACGTCAGTGGAGGATATATAAGGCCGCACAATCCGCGCCGCCATCAGTTCGCTCTCGCCACCAACACCACCGCCATTTCCACTCGCTCGAGAGCACCAGATTAGCGGAGGAGAGAGGGGTCCGCGACTCGCGAGGGAGAGGAAAGCAAGCGGAGTTGAGGATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACCATCACCCTCGAGGTGGAGAACAGCGACGCCGTCGCCAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTAACCCTGCTCTCTTACTGCTCGTGTTGCGAGTTTGAGACTGCGGTTGCATATCGATCTCTCTGCCCCCATCTGCTTGTTGCATTTGCCCGATCAGATCAGTAGCAAAGAATTCGTGGATTTGGGTTGGTCGGTGACTGGGGTTTTTGGCTGACTAATTGTTTCTGTGCTTGTAGGTATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGTGCTTCGCCTACGCGGCGGCCACATCTGGATCGAGCCCTCGCTCAGGGTCCTCGCCTACAAGCACAACATCAACAAGATGGTCTGCAGGAAGTAATACTACTCGCGCACCGCTCCCTTCTTAGTTCTTACATCGATCTATCGCAACCTGAGATGTTGTTGAGTTGGTCGTGCTTGCTTAGATGAGTTTTGTTAGCGATGAACAGTTCAGTATTTTAGTTGGATGCATTCTATTACGAGTCAGCTATGATCAATGTGAGCACCTTGTCGATGTCTCACCAATCCACCATATGGATCGTTTTAATTTCAGTTTTTTTTTCTAACAGCAGGGGCACTAGGCCACTGGCACCACAAAGGCACAAAGTCCTCTCTCACTGTGATATACTGTTGCCGTCAGGTTTATGTTTATTCACGTCATGTAGTTAGTTGGATCGATATAAGGTTGATAGGCAATGCAAGCAGGAAGGTTCAATTGCGAACCAGCCAGATCGGCACACATATACATTCTGTTTCGGGTGTGTCAGTTTAGTCATCAATACTTTTGAAAGAATTTACAAATTGTACCATGCTGCAAGTCGTTTGATTACTTTGTACACTCTTTGCCCTTTCTATGGCTTGGTGAGAACTGTGCTGTTACTCGTTTACGTTATTGGGACGGTTGTTTGGTAGAAAAAATGATCGATCAATCCGATGCGCAAGATAAGCTGTGTTTCAAAATCTCTCAATGTGCATACATATAGTCTCCCTAGTCCTTTATATTTGGTCAGCTATAAGGCAATTTGGTCGAGAATTTTGTGCTTGCAAGGTTCATTGCACAATTTGTCTTTTTTTGTTCACCCCTTTGTCTTGCAGGTGCTATGCAACTCTGCCTCCCAGGGCTACAAACTACCGCAAGAAGAAGTGTGGCCACAGCAATTAG
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| CDS seq | ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACCATCACCCTCGAGGTGGAGAACAGCGACGCCGTCGCCAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGTGCTTCGCCTACGCGGCGGCCACATCTGGATCGAGCCCTCGCTCAGGGTCCTCGCCTACAAGCACAACATCAACAAGATGGTCTGCAGGAAGTGCTATGCAACTCTGCCTCCCAGGGCTACAAACTACCGCAAGAAGAAGTGTGGCCACAGCAATTAG |
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| Protein seq | MQIFVKTLTGKTITLEVENSDAVANVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGHIWIEPSLRVLAYKHNINKMVCRKCYATLPPRATNYRKKKCGHSN |
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| Function | Ubiquitin-60S ribosomal protein L40 [UniProtKB/Swiss-Prot:P18101] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_03G0143800 | OsZS97_03T0143800.1 | Chr03 | 8666023 | 8667557 | + | makerRMon | ||
| CDS seq | ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACCATCACCCTCGAGGTGGAGAACAGCGACGCCGTCGCCAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGTGCTTCGCCTACGCGGCGGCCACATCTGGATCGAGCCCTCGCTCAGGGTCCTCGCCTACAAGCACAACATCAACAAGATGGTCTGCAGGAAGTGCTATGCAACTCTGCCTCCCAGGGCTACAAACTACCGCAAGAAGAAGTGTGGCCACAGCAATTAG
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| Protein seq | MQIFVKTLTGKTITLEVENSDAVANVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGHIWIEPSLRVLAYKHNINKMVCRKCYATLPPRATNYRKKKCGHSN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.2549495 | 0.9264795 | 0.959673 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0234200 | SBH | 30.272852 | 31.991102 | 112.729866 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g15370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0234200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0002500 | SBH | 0.929363 | 28.982368 | 13.960717 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002470 | SBH | 0.205735 | 2.927120 | 4.497002 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002500 | SBH | 1.181027 | 18.514675 | 16.951279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0002480 | SBH | 0.158323 | 0.394492 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002510 | SBH | 6.095257 | 19.584394 | 23.116657 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0142600 | RBH | 0.2397 | 0.683824 | 0.644876 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002460 | SBH | 0.244793 | 1.135332 | 2.573886 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0396200 | SBH | 43.5979045 | 116.170555 | 106.664093 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0002540 | SBH | 0.170154 | 0.177045 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0002540 | SBH | 1.192571 | 13.676240 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0002510 | SBH | 5.522824 | 21.970572 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002550 | SBH | 0.462654 | 1.317762 | 2.510011 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0002530 | SBH | 0.165054 | 3.708686 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G002530 | SBH | 0.848210 | 4.259054 | 5.927008 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002350 | SBH | 1.553077 | 8.306368 | 14.267241 |
