Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0002510 | OGI:03004860 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:1844003-1848856 | ||||||||
| Gene Symbol | DSK2A, OsDSK2a | ||||||||||
| DNA seq | tttctagcacatcttcactgaagagttagggcatctatagattgtaagagcaggcaaggaaacataaacaacggtcatgtacactgcagtaaccaccaatagctcaatatgtatgtacaccaacccaaagtaccatcaatacaccaatatctcgatcacgacatgacaaccatgtatggaaaggttaacccacttgactcaTttattcatctaaaccatgtacctagatgatgcctttgaatctgacagggtataaaaccaatgaaccagacaatcttacaatctgagctacaggtaacagtcggggacatcttcgatcacaaccgtctatcagccaatattCccaagaagtcgctccaccgcagcatgaacatttcccgctgtagcaatcaaagctcgaatgttctcctgtgtgtcaaagaaacccatttcttggagctgagctagttgtgttgcatatagttcttctggtggaactgcaaatattgacattgcttaacgagggcaaaccaaccgactccaactcAaaaaaaattcaaaaaaatattgatgtgaccatttcttgcagtattgcactccaaaatatatagaaaatcactaaccattgggtgcactaggaacacctaggccaccaccagcaccgagcccactgaacatgctcatcagattgttgaggttagtattgcctgacattaaagtactctcataagtcatgccattaaagtattctaaattaatttcaatgacgcaccaaaatatatactagcaataattcaacaatctaaataagacatctgaccatgtttaatttgctaccagttgacaagatatggtaacatactaacatcttacatttcacattgatttctaattatgaactcagaatcccatttgagttagatgcctgattcaactaccactaacaaagtaaaccagggtacaaaatatcaacaaattaaatcaataaaattgtttcctagaaaactatatttgatctGgagggcattgatttgtttcatcgtggtgcatgatcgatataaatatctaaaaaggcaaattttgagcatcctattgctctcttagtaaatAaaaacttattgtaagaaatgctataacatgattctgcaatttatcaacaaatataaaaaaaaatcttagcctatatgactctctagaagttgacatatgtatcaccatatatgtatctgatagctctgtgaaagacagttctgatagtgaacatcagtagaggaagttacctgcaccagcacctgattgggttcgctctctggttcaaaaaaaaaagaaaaggattcaataagaagtagtataggcgagacttacaaataaaaatctcttgattttacactcaacaagtaacttagaaaaataaaaggTAtatataaacatgatgagcttaaataggttaagttgaactggggaatactcacgggccagcttgttgttgaccaagttgtgacatcaaggactgctggaatgagattaattgctacacacacacacacacacacacacaaaaaaaaaaaaaaaaaaacatcataagccatctgatttccatacactacagcagtataactaattttacctgcaaagtttcaggagatgtcagctggcgaacaaattctgggttctggaacatctccctcaactgagtgttagattccatcatattacgtacatttgggttgatattaagaaactgcaagcaagacggaatcatgagataattaaaacactatgtatcatgcatatcaagaagcacaacatcaactattccatgaaagatataaatgaagcaacgaacctgattcatggactgaggatttgacataatgttctgcatcatttgcatcattgtaggattctgcaacacctgactcaagaaggaagtatccgagccaccacccagcatacctcccaaatctgtagaacttaaccctcctaggccaccagctggggcactccttgcattggtaactggagagggccttgttgctccctgtgcagctccagctgttgatttaactattagtcagagagaatcccatctgcgaatctaggataccaaaacaggacaagaaaacatacaccaaaataaaaaaaaaagtacacaaaacttaccagttGtgctccagggatttggaagtggattagtgtttggagcaggagaacctgttgtggattctgaggtggtcgttggtgaatttgcagctggatctctggcttggtttgatccatgatttcctaggagagcagaaaatgggtttgaacttctatcaccctccccagccatcgttgttgcattcagaaatggctcttgaacagtttcatacatgcggcggagcatattgaacccttctggagaagattcaatgttgctcatggctctgtctgtgttccgcatcatctctcgcataagttcaggattcctagctgcttcaacagtctggcggagaatgctcggatcattgaggacatgagcaagatccggattacgatcaacaatttcacgcatttgggggttgttcataattatattgcgaattagatcagggctattcaatatattctgcatgagtggcatattcattatttctctcatcaacgtagggttctcggatagctgttgttgcatctgggatagttctggaaggccagaaccaaatgagcccaaccctccactgttagcagaacctgaacccccgagaccatgcaacaaacctccaaaaccagctgctggtgaattggtagcagtggtagcattaatggcaggagttacattgttggctgcaggaggtgcggttgatgctggtggtggtgcagcaccacggaccatgtgaatggtgtgatccgtctcaacaccttcaagagggaaaataggcataagaacaagaacatttggaaaatctttgtgactcaaggttaaacatgcactgcagcagtaaacttgctgcattcaaagagtaatgatttctaaaagcatttgtcaaaattgagtagatggacctaccatatctggtaactcataagttgatgtgcacgtgagcaaaataaaaattggtactacctccgtcccaaaatataacttctagccttcaaaatttgCccctaaatataacaactccacctacattctcttctcaaccaatcacaaccatccaccattcaaattacctacctacctcctcttctcaaccaatcacaatcttcctccgtttaattccatcaactttcttaatacacgtgttcaatcctaaaactccttatgggacagaggtaataactgtttaaaagcacaaaggtgggcaaagactgcataagaggataaccTtctttcacgaagaccaatatccacacccaacgttgaaaagaaaaaccagaaacctcatataaatgattcggaaacacatgggtgcagatttgaataggttcaaatgcaagaggatatgatgggcatggatgcaataggtgggatcaaaacccgatgctcagtattaaattttactcatattaattcaattccatataaagcttcatctagtggcccgaaagaatctgcaataaacagtacaacccTctgccttttacttgaaaaggaatataacatgcaccaaacagcatgcatcacagtagcagtttttgtagtacgtttggaagattgaatctctttcagttctacactgctgtggagagttgcccatgtggataatgctgcgcatttagcttctgttgatgtcataacacgccaataattaatgctacatcataaggccatgaccagatgtAcaagttatcacattacacgtggatcattacgagtagtttataacaagcacttgcaacgaatgacgcaggacaataaaaacagcattataaagcttccatatttgctaatcactaagatgccattatgctgacaatatccagcaaggaatgtatattcctgcaaaaataccctaaccacgcattaccagatacaatttcacatcgaacatgtgcacttaacaatgcgattggtggctccatgatgtttggaatcactttcatgtcaagaagggagggaagtgcttattttccttctactgcatgttcgctaaactgcattataaattagagtagcaaggctccctgatactgccttccactgcatcttcactgggctgcattataaattagtgtgcaagtctccctgatgctgcttaCccaataataccatcgtctaccaagtaataacatggaaaatcaaagagataattcacacacggcatgaaaggagcagctttccttcgcactcctgactcctcctacaacaacggcattggcgcattgtatcaaacatacgaactagaatgaatcggacctaaaccatcgcatctcaggcacagaccgagcaaatcgcatcaagcacacaagctagcgctaaccgcacagaagagggcaggcacgtaccgtagctggctagggtttgctcgtccttcaagatccggcccttgtagatcagccgctgctgcggcgccggcacgtcgcagctctcggcgacgatcgccttgaacgccccgacgctgagccccaggtcagcccgcaccgcgagcTtggagccgttggtgcaccggatgtgcagcgtcgcggccgccgccgcggcgggtgcctcttccccgtccccgccgcccataaccctagctctcgatccgacgcggggctgcgccttcccgatccttcgacgcgtgcggtgcgagtgcgatgcgggcgagaggagtgtggcGTgtgttcccctcccccctcctcttcccgtctcgcgtgtcgcgtgtcgcgtctcgtctgcacgggcttgtg
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| CDS seq | atgggcggcggggacggggaagaggcacccgccgcggcggcggccgcgacgctgcacatccggtgcaccaacggctccaAgctcgcggtgcgggctgacctggggctcagcgtcggggcgttcaaggcgatcgtcgccgagagctgcgacgtgccggcgccgcagcagcggctgatctacaagggccggatcttgaaggacgagcaaaccctagccagctacggtgttgagacggatcacaccattcacatggtccgtggtgctgcaccaccaccagcatcaaccgcacctcctgcagccaacaatgtaactcctgccattaatgctaccactgctaccaattcaccagcagctggttttggaggtttgttgcatggtctcgggggttcaggttctgctaacagtggagggttgggctcatttggttctggccttccagaactatcccagatgcaacaacagctatccgagaaccctacgttgatgagagaaataatgaatatgccactcatgcagaatatattgaatagccctgatctaattcgcaatataattatgaacaacccccaaatgcgtgaaattgttgatcgtaatccggatcttgctcatgtcctcaatgatccgagcattctccgccagactgttgaagcagctaggaatcctgaacttatgcgagagatgatgcggaacacagacagagccatgagcaacattgaatcttctccagaagggttcaatatgctccgccgcatgtatgaaactgttcaagagccatttctgaatgcaacaacgatggctggggagggtgatagaagttcaaacccattttctgctctcctaggaaatcatggatcaaaccaagccagagatccagctgcaaattcaccaacgaccacctcagaatccacaacaggttctcctgctccaaacactaatccacttccaaatccctggagcaCaactgttaaatcaacagctggagctgcacagggagcaacaaggccctctccagttaccaatgcaaggagtgccccagctggtggcctaggagggttaagttctacagatttgggaggtatgctgggtggtggctcggatacttccttcttgagtcaggtgttgcagaatcctacaatgatgcaaatgatgcagaacattatgtcaaatcctcagtccatgaatcagtttcttaatatcaacccaaatgtacgtaatatgatggaatctaacactcagttgagggagatgttccagaacccagaatttgttcgccagctgacatctcctgaaactttgcagcaattaatctcattccagcagtccttgatgtcacaacttggtcaacaacaagctggcccagagcgaacccaatcaggtgctggtgcagaatactttaatggcatgacttatgagagtactttaatgtcaggcaatactaacctcaacaatctgatgagcatgttcagtgggctcggtgctggtggtggcctaggtgttcctagtgcacccaatgttccaccagaagaactatatgcaacacaactagctcagctccaagaaatgggtttctttgacacacaggagaacattcgagctttgattgctacagcgggaaatgttcatgctgcggtggagcgacttcttggGaatattggctga
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| Protein seq | MGGGDGEEAPAAAAAATLHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVETDHTIHMVRGAAPPPASTAPPAANNVTPAINATTATNSPAAGFGGLLHGLGGSGSANSGGLGSFGSGLPELSQMQQQLSENPTLMREIMNMPLMQNILNSPDLIRNIIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGEGDRSSNPFSALLGNHGSNQARDPAANSPTTTSESTTGSPAPNTNPLPNPWSTTVKSTAGAAQGATRPSPVTNARSAPAGGLGGLSSTDLGGMLGGGSDTSFLSQVLQNPTMMQMMQNIMSNPQSMNQFLNINPNVRNMMESNTQLREMFQNPEFVRQLTSPETLQQLISFQQSLMSQLGQQQAGPERTQSGAGAEYFNGMTYESTLMSGNTNLNNLMSMFSGLGAGGGLGVPSAPNVPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG |
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| Function | Ubiquitin domain-containing protein DSK2a [UniProtKB/Swiss-Prot:Q9SII9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0002510 | OsGoSa_03g0002510.01 | Chr03 | 1844003 | 1848856 | - | NAM | ||
| CDS seq | atgggcggcggggacggggaagaggcacccgccgcggcggcggccgcgacgctgcacatccggtgcaccaacggctccaAgctcgcggtgcgggctgacctggggctcagcgtcggggcgttcaaggcgatcgtcgccgagagctgcgacgtgccggcgccgcagcagcggctgatctacaagggccggatcttgaaggacgagcaaaccctagccagctacggtgttgagacggatcacaccattcacatggtccgtggtgctgcaccaccaccagcatcaaccgcacctcctgcagccaacaatgtaactcctgccattaatgctaccactgctaccaattcaccagcagctggttttggaggtttgttgcatggtctcgggggttcaggttctgctaacagtggagggttgggctcatttggttctggccttccagaactatcccagatgcaacaacagctatccgagaaccctacgttgatgagagaaataatgaatatgccactcatgcagaatatattgaatagccctgatctaattcgcaatataattatgaacaacccccaaatgcgtgaaattgttgatcgtaatccggatcttgctcatgtcctcaatgatccgagcattctccgccagactgttgaagcagctaggaatcctgaacttatgcgagagatgatgcggaacacagacagagccatgagcaacattgaatcttctccagaagggttcaatatgctccgccgcatgtatgaaactgttcaagagccatttctgaatgcaacaacgatggctggggagggtgatagaagttcaaacccattttctgctctcctaggaaatcatggatcaaaccaagccagagatccagctgcaaattcaccaacgaccacctcagaatccacaacaggttctcctgctccaaacactaatccacttccaaatccctggagcaCaactgctggagctgcacagggagcaacaaggccctctccagttaccaatgcaaggagtgccccagctggtggcctaggagggttaagttctacagatttgggaggtatgctgggtggtggctcggatacttccttcttgagtcaggtgttgcagaatcctacaatgatgcaaatgatgcagaacattatgtcaaatcctcagtccatgaatcagtttcttaatatcaacccaaatgtacgtaatatgatggaatctaacactcagttgagggagatgttccagaacccagaatttgttcgccagctgacatctcctgaaactttgcagcaattaatctcattccagcagtccttgatgtcacaacttggtcaacaacaagctggcccagagcgaacccaatcaggtgctggtgcaggcaatactaacctcaacaatctgatgagcatgttcagtgggctcggtgctggtggtggcctaggtgttcctagtgcacccaatgttccaccagaagaactatatgcaacacaactagctcagctccaagaaatgggtttctttgacacacaggagaacattcgagctttgattgctacagcgggaaatgttcatgctgcggtggagcgacttcttggGaatattggctga
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| Protein seq | MGGGDGEEAPAAAAAATLHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVETDHTIHMVRGAAPPPASTAPPAANNVTPAINATTATNSPAAGFGGLLHGLGGSGSANSGGLGSFGSGLPELSQMQQQLSENPTLMREIMNMPLMQNILNSPDLIRNIIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGEGDRSSNPFSALLGNHGSNQARDPAANSPTTTSESTTGSPAPNTNPLPNPWSTTAGAAQGATRPSPVTNARSAPAGGLGGLSSTDLGGMLGGGSDTSFLSQVLQNPTMMQMMQNIMSNPQSMNQFLNINPNVRNMMESNTQLREMFQNPEFVRQLTSPETLQQLISFQQSLMSQLGQQQAGPERTQSGAGAGNTNLNNLMSMFSGLGAGGGLGVPSAPNVPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0002510 | OsGoSa_03g0002510.02 | Chr03 | 1844039 | 1848855 | - | NAM | ||
| CDS seq | atgggcggcggggacggggaagaggcacccgccgcggcggcggccgcgacgctgcacatccggtgcaccaacggctccaAgctcgcggtgcgggctgacctggggctcagcgtcggggcgttcaaggcgatcgtcgccgagagctgcgacgtgccggcgccgcagcagcggctgatctacaagggccggatcttgaaggacgagcaaaccctagccagctacggtgttgagacggatcacaccattcacatggtccgtggtgctgcaccaccaccagcatcaaccgcacctcctgcagccaacaatgtaactcctgccattaatgctaccactgctaccaattcaccagcagctggttttggaggtttgttgcatggtctcgggggttcaggttctgctaacagtggagggttgggctcatttggttctggccttccagaactatcccagatgcaacaacagctatccgagaaccctacgttgatgagagaaataatgaatatgccactcatgcagaatatattgaatagccctgatctaattcgcaatataattatgaacaacccccaaatgcgtgaaattgttgatcgtaatccggatcttgctcatgtcctcaatgatccgagcattctccgccagactgttgaagcagctaggaatcctgaacttatgcgagagatgatgcggaacacagacagagccatgagcaacattgaatcttctccagaagggttcaatatgctccgccgcatgtatgaaactgttcaagagccatttctgaatgcaacaacgatggctggggagggtgatagaagttcaaacccattttctgctctcctaggaaatcatggatcaaaccaagccagagatccagctgcaaattcaccaacgaccacctcagaatccacaacaggttctcctgctccaaacactaatccacttccaaatccctggagcaCaactgttaaatcaacagctggagctgcacagggagcaacaaggccctctccagttaccaatgcaaggagtgccccagctggtggcctaggagggttaagttctacagatttgggaggtatgctgggtggtggctcggatacttccttcttgagtcaggtgttgcagaatcctacaatgatgcaaatgatgcagaacattatgtcaaatcctcagtccatgaatcagtttcttaatatcaacccaaatgtacgtaatatgatggaatctaacactcagttgagggagatgttccagaacccagaatttgttcgccagctgacatctcctgaaactttgcagcaattaatctcattccagcagtccttgatgtcacaacttggtcaacaacaagctggcccagagcgaacccaatcaggtgctggtgcagaatactttaatggcatgacttatgagagtactttaatgtcaggcaatactaacctcaacaatctgatgagcatgttcagtgggctcggtgctggtggtggcctaggtgttcctagtgcacccaatgttccaccagaagaactatatgcaacacaactagctcagctccaagaaatgggtttctttgacacacaggagaacattcgagctttgattgctacagcgggaaatgttcatgctgcggtggagcgacttcttggGaatattggctga
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| Protein seq | MGGGDGEEAPAAAAAATLHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVETDHTIHMVRGAAPPPASTAPPAANNVTPAINATTATNSPAAGFGGLLHGLGGSGSANSGGLGSFGSGLPELSQMQQQLSENPTLMREIMNMPLMQNILNSPDLIRNIIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGEGDRSSNPFSALLGNHGSNQARDPAANSPTTTSESTTGSPAPNTNPLPNPWSTTVKSTAGAAQGATRPSPVTNARSAPAGGLGGLSSTDLGGMLGGGSDTSFLSQVLQNPTMMQMMQNIMSNPQSMNQFLNINPNVRNMMESNTQLREMFQNPEFVRQLTSPETLQQLISFQQSLMSQLGQQQAGPERTQSGAGAEYFNGMTYESTLMSGNTNLNNLMSMFSGLGAGGGLGVPSAPNVPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 1844688 | 1845262 | - | OsGoSa_03g0002510.02 | OsGoSa_03g0002510.02,OsGoSa_03g0002510.01 | All |
| A3 | Chr03 | 1846036 | 1846145 | - | OsGoSa_03g0002510.02 | OsGoSa_03g0002510.02,OsGoSa_03g0002510.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.522824 | 21.970572 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0131300 | RBH | 3.597836 | 2.740912 | 14.199982 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03920 | RBH | 2.106656 | 1.746173 | 3.671518 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0131300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0002500 | RBH | 0.929363 | 28.982368 | 13.960717 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002470 | RBH | 0.205735 | 2.927120 | 4.497002 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002500 | RBH | 1.181027 | 18.514675 | 16.951279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0002480 | RBH | 0.158323 | 0.394492 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002510 | RBH | 6.095257 | 19.584394 | 23.116657 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0028100 | RBH | 6.447754 | 12.7816515 | 37.352503 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002460 | RBH | 0.244793 | 1.135332 | 2.573886 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0028800 | RBH | 13.473606 | 18.9321365 | 16.639166 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0002540 | RBH | 0.170154 | 0.177045 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0002540 | RBH | 1.192571 | 13.676240 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018850 | RBH | 17.110117 | 55.190075 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002550 | RBH | 0.462654 | 1.317762 | 2.510011 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0002530 | RBH | 0.165054 | 3.708686 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G002530 | RBH | 0.848210 | 4.259054 | 5.927008 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002350 | RBH | 1.553077 | 8.306368 | 14.267241 |
