Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_03G0047200 | OGI:03009480 | 2/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr03:2923282-2924649 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGGGGTCGGGGGCTCCTGGCGTCGTCGGACAAGCGAGCAAAGGGCCAACTCCGGTCGTCAGGGGCCTCCGGCCTCCGTTCGGCTCGGGGGCCTCTTCTCCCTGCTCTCTCCCGGGTCGAGTCAGCACAGGGTTAGCCTCGGGGCCAAAGGGCGATAGGTGCGGCCTTCCCGCAGTGGCCTCGGGGCCTTCCTGAGGGTCGGGGGCACCCAGCACCGTTTGACAGGCGGGCAGAGGGCCGACTCCAGTCGTCAGGGGCCTTAGGCCACCATTCGACCCGGGAGCCTCTCCTCCCTGCTTGCTCCCGGGCCAAGTCGGCACAGGGTGGGGGTGCGCGGAATGAGGATTGTCCTCATCGCGCTCCACAACCAACGCTGCACTAACTACTTGGGGGGTCGCCGCTAAGTAAAGTAACAGGGGCTCTTTTGGCTCCGGGGCGACTAGAACCGGAGGAGAGCTGAGATACGCCTTCAACTGGGCGAGGGCATTTTCAGCTTCCTCCGTCCAAGTAAACGGCCCCGAGCACTTGAGGAGCTTAAATAAGGGTAGCGCCTTCTCTCCCAGCCTCGATATGAAACGACTTAGGGCGGCCATGCAACCGGTGACGCACTGCACATCCCTAAGTTTACTGGGGGGGCGCATCCGCTCTATAGCTCGTATCTTCTCGGGGTTGGCCTCGATGCCACGGGCAGAGACTAAGAACCCAAGAAGCTTGCCCGCAGGTACACCAAACACACACTTATCGGGGTTCAGTTTTATGCGGGCGGAGCGGAGATTTTCAAAAGTTTCCGCTAGATCTGAGAGTAAGGTCTCTTGGTTGCGCGTCTTTACAACCAAGTCATCGACATAAGCCTCAACATTACGTCCTATTTGGCTACCCAAAGAAATTCGAGTAGTACGTTGAAAAGTAGGACCTGCATTCTTTAACCCGAAGGGCATTGATGTATAACAATAGGTTCCTACGGGGGTAATGAACGCAGTTTTTTCCTCATCCTCCCTAGCCATGCGAATCTGATGGTAACCAGAGTATGCATCTAGAAAACACAAAAGGTCGCACCCCGCAGTGGAGTCGACAATCTGATCTATGCGAGGCAGGGGGTAAGGGTCCTTAGGACATGCCTTGTTAAGGTCGGTGTAGTCGATGCACATCCGGAGCTTGCCGTTCGCCTTGGGAACGACCACCGGGTTCGCCAGCCACTCCGGATGGATGACCTCACGAATGAATCCGGCCTCCAGAAGCCTTGCCACCTCCTCGCGGATGAAGGCTTGACGTTCCGGGGCCTGCCGCCGCACTTTCTGCCGGACCGGCTTCGCGCCCGGCCGCACGGCGAGACGGTGCTCAATCACCTCCCTGGGGACCCCGGGCAT
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| CDS seq | ATGCCCGGGGTCCCCAGGGAGGTGATTGAGCACCGTCTCGCCGTGCGGCCGGGCGCGAAGCCGGTCCGGCAGAAAGTGCGGCGGCAGGCCCCGGAACGTCAAGCCTTCATCCGCGAGGAGGTGGCAAGGCTTCTGGAGGCCGGATTCATTCGTGAGGTCATCCATCCGGAGTGGCTGGCGAACCCGGTGGTCGTTCCCAAGGCGAACGGCAAGCTCCGGATGTGCATCGACTACACCGACCTTAACAAGGCATGTCCTAAGGACCCTTACCCCCTGCCTCGCATAGATCAGATTGTCGACTCCACTGCGGGGTGCGACCTTTTGTGTTTTCTAGATGCATACTCTGGTTACCATCAGATTCGCATGGCTAGGGAGGATGAGGAAAAAACTGCGTTCATTACCCCCGTAGGAACCTATTGTTATACATCAATGCCCTTCGGGTTAAAGAATGCAGGTCCTACTTTTCAACGTACTACTCGAATTTCTTTGGGTAGCCAAATAGGACGTAATGTTGAGGCTTATGTCGATGACTTGGTTGTAAAGACGCGCAACCAAGAGACCTTACTCTCAGATCTAGCGGAAACTTTTGAAAATCTCCGCTCCGCCCGCATAAAACTGAACCCCGATAAGTGTGTGTTTGGTGTACCTGCGGGCAAGCTTCTTGGGTTCTTAGTCTCTGCCCGTGGCATCGAGGCCAACCCCGAGAAGATACGAGCTATAGAGCGGATGCGCCCCCCCAGTAAACTTAGGGATGTGCAGTGCGTCACCGGTTGCATGGCCGCCCTAAGTCGTTTCATATCGAGGCTGGGAGAGAAGGCGCTACCCTTATTTAAGCTCCTCAAGTGCTCGGGGCCGTTTACTTGGACGGAGGAAGCTGAAAATGCCCTCGCCCAGTTGAAGGCGTATCTCAGCTCTCCTCCGGTTCTAGTCGCCCCGGAGCCAAAAGAGCCCCTGTTACTTTACTTAGCGGCGACCCCCCAAGTAGTTAGTGCAGCGTTGGTTGTGGAGCGCGATGAGGACAATCCTCATTCCGCGCACCCCCACCCTGTGCCGACTTGGCCCGGGAGCAAGCAGGGAGGAGAGGCTCCCGGGTCGAATGGTGGCCTAAGGCCCCTGACGACTGGAGTCGGCCCTCTGCCCGCCTGTCAAACGGTGCTGGGTGCCCCCGACCCTCAGGAAGGCCCCGAGGCCACTGCGGGAAGGCCGCACCTATCGCCCTTTGGCCCCGAGGCTAACCCTGTGCTGACTCGACCCGGGAGAGAGCAGGGAGAAGAGGCCCCCGAGCCGAACGGAGGCCGGAGGCCCCTGACGACCGGAGTTGGCCCTTTGCTCGCTTGTCCGACGACGCCAGGAGCCCCCGACCCCTAG
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| Protein seq | MPGVPREVIEHRLAVRPGAKPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKCSGPFTWTEEAENALAQLKAYLSSPPVLVAPEPKEPLLLYLAATPQVVSAALVVERDEDNPHSAHPHPVPTWPGSKQGGEAPGSNGGLRPLTTGVGPLPACQTVLGAPDPQEGPEATAGRPHLSPFGPEANPVLTRPGREQGEEAPEPNGGRRPLTTGVGPLLACPTTPGAPDP |
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| Function | Transposon Ty3-I Gag-Pol polyprotein [UniProtKB/Swiss-Prot:Q7LHG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_03G0047200 | OsZS97_03T0047200.1 | Chr03 | 2923282 | 2924649 | - | makerRMon | ||
| CDS seq | ATGCCCGGGGTCCCCAGGGAGGTGATTGAGCACCGTCTCGCCGTGCGGCCGGGCGCGAAGCCGGTCCGGCAGAAAGTGCGGCGGCAGGCCCCGGAACGTCAAGCCTTCATCCGCGAGGAGGTGGCAAGGCTTCTGGAGGCCGGATTCATTCGTGAGGTCATCCATCCGGAGTGGCTGGCGAACCCGGTGGTCGTTCCCAAGGCGAACGGCAAGCTCCGGATGTGCATCGACTACACCGACCTTAACAAGGCATGTCCTAAGGACCCTTACCCCCTGCCTCGCATAGATCAGATTGTCGACTCCACTGCGGGGTGCGACCTTTTGTGTTTTCTAGATGCATACTCTGGTTACCATCAGATTCGCATGGCTAGGGAGGATGAGGAAAAAACTGCGTTCATTACCCCCGTAGGAACCTATTGTTATACATCAATGCCCTTCGGGTTAAAGAATGCAGGTCCTACTTTTCAACGTACTACTCGAATTTCTTTGGGTAGCCAAATAGGACGTAATGTTGAGGCTTATGTCGATGACTTGGTTGTAAAGACGCGCAACCAAGAGACCTTACTCTCAGATCTAGCGGAAACTTTTGAAAATCTCCGCTCCGCCCGCATAAAACTGAACCCCGATAAGTGTGTGTTTGGTGTACCTGCGGGCAAGCTTCTTGGGTTCTTAGTCTCTGCCCGTGGCATCGAGGCCAACCCCGAGAAGATACGAGCTATAGAGCGGATGCGCCCCCCCAGTAAACTTAGGGATGTGCAGTGCGTCACCGGTTGCATGGCCGCCCTAAGTCGTTTCATATCGAGGCTGGGAGAGAAGGCGCTACCCTTATTTAAGCTCCTCAAGTGCTCGGGGCCGTTTACTTGGACGGAGGAAGCTGAAAATGCCCTCGCCCAGTTGAAGGCGTATCTCAGCTCTCCTCCGGTTCTAGTCGCCCCGGAGCCAAAAGAGCCCCTGTTACTTTACTTAGCGGCGACCCCCCAAGTAGTTAGTGCAGCGTTGGTTGTGGAGCGCGATGAGGACAATCCTCATTCCGCGCACCCCCACCCTGTGCCGACTTGGCCCGGGAGCAAGCAGGGAGGAGAGGCTCCCGGGTCGAATGGTGGCCTAAGGCCCCTGACGACTGGAGTCGGCCCTCTGCCCGCCTGTCAAACGGTGCTGGGTGCCCCCGACCCTCAGGAAGGCCCCGAGGCCACTGCGGGAAGGCCGCACCTATCGCCCTTTGGCCCCGAGGCTAACCCTGTGCTGACTCGACCCGGGAGAGAGCAGGGAGAAGAGGCCCCCGAGCCGAACGGAGGCCGGAGGCCCCTGACGACCGGAGTTGGCCCTTTGCTCGCTTGTCCGACGACGCCAGGAGCCCCCGACCCCTAG
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| Protein seq | MPGVPREVIEHRLAVRPGAKPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKCSGPFTWTEEAENALAQLKAYLSSPPVLVAPEPKEPLLLYLAATPQVVSAALVVERDEDNPHSAHPHPVPTWPGSKQGGEAPGSNGGLRPLTTGVGPLPACQTVLGAPDPQEGPEATAGRPHLSPFGPEANPVLTRPGREQGEEAPEPNGGRRPLTTGVGPLLACPTTPGAPDP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.014869 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g07030 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003581 | SBH | 0.261426 | 0.210350 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0128000 | SBH | 0.005955 | 0.0046375 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003581 | SBH | 0.291781 | 0.379513 | 1.215315 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0425000 | SBH | 0.0043325 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003681 | SBH | 0.316122 | 0.281476 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003681 | SBH | 0.931604 | 0.723665 | 0.740611 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003632 | SBH | 0.355494 | 4.667260 | 2.198761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
