Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0003681 | OGI:03007070 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:2669319-2674594 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcgtcgactcgacccaaccggatcgagcgccgccgccgccgccaagccgccaccaattcaattcatcgatgattcgagtcacggatacattgagtgttttataccgtatccctTCtctctctctctctctctctcttacagccaacagtattacagctggcgaattctttccctattacaagaaagatgttacttggcccacattgacccactatagcgagggttaggaacacgagctcgaatgggcttctttgctgtagcgcttgaagtctcttctatctcctgctctgctgctatctccagttctgctgtattgttctcctgttctccatcaggaaagatcttgacaaccccctccccttgaaaagtggcttgcccccaagccagtgccattggaaaacgctgctgaagatcttcccgatcctcccaggtggcatcctctgcaacagaatcagaccaatgtacaagaacttgagaaacagtgcgattacctttcctgatcaatcgctggtccagaatctgaagaggatagacagttgatttcaagaatttgggcagccgagattgaacttgatgcttaaatccatgtgcaaccttgagctgggaaacatggaaaactggatggatagtactgtcatctggcaattgaagcttataagcaacagtaccgacccttgccaatatctgaaaggggccatagaacttgaaagccagcttatgacaagctcgagatgcaacagacttctgaacgtatggttgcagcttaagaaatacccagtcccccactgcaaattctctgaatgacctgttcttatcagcatgaaacttcatcTtttgttgtactcggtgcaaatgctgttgcagcaattctgccatcagtttcctctcatgaagccaaacagccagatcgggaatcgcacaagtttccatagtaacacccaactgaagagggttatggccatagagtacttcgaatggtgtcttgttcaaagcagaatgaaagcaagtattataccaatactctgctaaatgtaaccaagtaacccacttagaaggggctgcattagtgaaacaacggagaaacatttccaaacactggttaaccctctcagtttgcccatcggactatgggtgataagcagaactaaggtgcagggcaatgccagatttcaagaaaagaaattcccacaatttgctagtaaaaattttgtctctatcagagatcagtactttaggcatcccatgaagtttgtagatgttcttcatatatgacactgcaacatctagggctgagaatgggtgtgacagaggaacaaagtgggcatacctggagaatttgtcaaccaccactagtatgcaattgtatctctctgattttggcaatccctcaataaaatccaatgagaccacttgccaggcaccttctggaatcggcaagggttgcagcagtcctggatatttagctaggtctggtttcgcttgttgacagatagtacaattctttacccactgctgaatcattttcttcatctgtggccaagcaaacagtgcttttactcgctgataagttactgggaaaccagaatgtccacctatagggctggcatgcaaggcagtgactagctgttgctataaggataaattatgcccaatccaaattttacccttgtaccgcaataccccttgcactaaacgaaaatgttccctggcagtaggatgcaatgccaattcagttaagagttgctgagcctgctcataagtttcatacccttttaccactgctgttaaccaaaggggttggcattcggatacagcccacaattgatcatttgtctcttcatcccttcttgataatgcatctgcagctgcattagaggttccccttcgataacaaaccttatactgtagtcccatcaacttagtgaaagccttatgttgcaacggagtatgtaatctttggtcagtgatatgcattagactgtggtgatctgtgagtatgacaaactcatcatgctgcaaatatgatctccactgatcgactgccaataggatagccaggtattccttctcatatgtagacagccccctggtttttggacctaatgctttgctaacaaaggcaatagggtacctgtcctgggacaaaactgcccctattcccatatcacaggcatctgtttccacagtgaaagtttttgagaagtcaggcagtgccaaaactggggcactaaccaaagcttgcttcaaggcattgaaagcttcatccatttgtgctgtccatttaaagggcacccctttcttaagcagctgggtgagtggtttgttgatagttccaaagtttctcacaaacttcctgtaatatcctgccaaacctaggaagcccctcaactgcttgactgactgaggaattttccaatgcagcacatcagcaatcttagaaggatcagcggttactccatccttgccaatgatatggcctaggtaagccagttgttgttgtgcaaaggaacatttactcaacttgactttccattgttgagcttgaagtagttgcaaaacttgttctaaatgctgaatatgcgatggtagatcagggctatagattagaatgtcatcaaagaaaaccaatgtaaattttcttagcactgtcgctagggtATCattcattgccttctgaaaagtagctggtgctccagtcaactcaaaggacatcactcgatactcatagtggcccgagtgagtttggaaggctgtcttgtgctcctctccaggttgcagccttatctggtgataacctgcccttaaatcgagtttagagaaatacttagctctagaaagctcatccagaagctcatcaatgacaggcatagggtattttcccttaattgtaattgcattcaggtgcctatagtctatgcaaagtctctaggtgccatctttctttttgactagcagtgctggtgatgAaaaagcattgttgctgttttgtgtgactccagactgaagcatttcagttacttgacgctcaatttcatccttgagtgctggggtatgcctatagggtctgaggttgactggtcttgctccttccatcaagggaatcttgtgatcacaattccttacaggtggcattcctgtgggttcttggaacacttcttgaaacctgtccaatacatgcttgattgaatcaggaatcactacatcagatgtctggtcagtcttctgaatctgtagtacatgcattactgactcagtcttcataagccctttgatctgcagagaagtaatctgagggtagtggtcagtttgaggctagataccctcaattctgatcaaccttcttgccagaggaaattcgagccatttctgcacccaatccaccttcatagggctgaactgttcaagccagtccatccccaggatagcatcgtaccctcccaattgtagaactctgaattcagttctgaaagagcaaccttgtatccaccagttgcagttaggtatgcttctatcacaCtgcatggttccaccgtcagtaatcttaatctgcactggatgtgataaggtctgaattcctgccagctttctagccacttgctcatcaatgaaggagtgagtacttccactatcaacaagcattaagagttccaagccctgaacccaacctctcaccctaatagactttgaagattccactccagctattgcctgacttgaaactgccataagagtgccctcagcttcagccacaatatcatcaccaactgggtcatcatcttcttgcaaagcttctaaaagctcttccatgacatgtaactgtactgttgaggcacatttgtggtcccttccccacctttcaccacaagtgaaacacagccccttagattttctgtaagccttaagtgaggacaatctatcatctctgggagtaatcttagctgcttcaggggttttcttatcctcattcacaataggtctcactggtagaggtgtcaaagaaacttgagcagtgttcctgaaattggacttcactggagtagagaactccaaccttcaagttcccagcattgcctcctcctgtaataaagccaaagagcaagcagtatccagatcttgggggcgttgcaccataattacagtgtgaatagcatcctttaaaccctctacgaacttagtgacgaagtacacaggcttcagttcactatcgtaagcaatcaattggtgcatcaagctatcaaacttctccacatattcagttacactaccagtctgtctaatgtgtatgtattgccttatcagctgttgatgcctaccccTAGaaaacttagcacaaactttctcacaaatttctacccaagtgactcctattaattgggacctaactgactgcaaccaaaatgaggcattcccagaaaaattgagggtggctatcctaacccaatgagcagggctgactccataagtatcaaagtaggcttcacagttttctctccacatttgggggttatctccatcaaattgtggacatggcataggaggtaaaccagtgcttgtgcccacagcactaccagtaaaagcagttcgcatggctggaccatggaaataaggagcaggtgtggagaacaagtttgagttcgtaccattggccgggggtggtgattggggatgagacccaagcacctccgcccgtatttcagcagcattgcaggcgcccaattgggcggtaaggttaggcttcggctccgccttgttcaggagttgaagctgatcgaactgaagctgcagatttccaactgtggtcgccagatcagtcaccttctcgagctatggcttccacgaatccactgatgtcttgaggttcagcatatccgcgcgggagttcttctccagatccaccaacttggactccgtctcggttagcttcttcaggatcagatccagcttggcctcgttctccatgattttgagcgcttgcttggtttgataccttggcttttccagtttgacgcaacgggatccacttcccctgttcctaatccagcaaaccgagaggggcaagttaccttttcgcggatttcagctgcaagagccgatctccaatccccaattggaacccttttgctgccggatcaagaattgggtgggatagtaggctctgataccaagttttgtcaactcctctcacagatcacaagaacagataggttatcgtcgactcgacccaaccggatcgagcgccgccgccgccaagccgccaccaattcaattcatcgat
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| CDS seq | atgcctgtcattgatgagcttctggatgagctttctagagctaagtatttctctaaactcgatttaagggcaggttatcaccagataaggctgcaacctggagaggagcacaagacagccttccaaactcactcgggccactatgagtatcgagtgatgtcctttgagttgactggagcaccagctacttttcagaaggcaatgaatGATaccctagcgacagtgctaagaaaatttacattggttttctttgatgacattctaatctatagccctgatctaccatcgcatattcagcatttagaacaagttttgcaactacttcaagctcaacaatggaaagtcaagttgagtaaatgttcctttgcacaacaacaactggcttacctaggccatatcattggcaaggatggagtaaccgctgatccttctaagattgctgatgtgctgcattggaaaattcctcagtcagtcaagcagttgaggggcttcctaggtttggcaggatattacaggaagtttgtgagaaactttggaactatcaacaaaccactcacccagctgcttaagaaaggggtgccctttaaatggacagcacaaatggatgaagctttcaatgccttgaagcaagctttggttagtgccccagttttggcactgcctgacttctcaaaaactttcactgtggaaacagatgcctgtgatatgggaataggggcagttttgtcccaggacaggtaccctattgcctttgttagcaaagcattaggtccaaaaaccagggggctgtctacatatgagaaggaatacctggctatcctattggcagtcgatcagtggagatcatatttgcagcatgatgagtttgtcatactcacagatcaccacagtctaatgcatatcactgaccaaagattacatactccgttgcaacataaggctttcactaagttgatgggactacagtataaggtttgttatcgaaggggaacctctaatgcagctgcagatgcattatcaagaagggatgaagagacaaatgatcaattgtgggctgtatccgaatgccaacccctttggttaacagcagtggtaaaagggtatgaaacttatgagcaggctcagcaactcttaactgaattggcattgcatcctactgccagggaacattttcgtttagtgcaaggggtattgcggtacaagggtaaaatttggattgggcataatttatcc
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| Protein seq | MPVIDELLDELSRAKYFSKLDLRAGYHQIRLQPGEEHKTAFQTHSGHYEYRVMSFELTGAPATFQKAMNDTLATVLRKFTLVFFDDILIYSPDLPSHIQHLEQVLQLLQAQQWKVKLSKCSFAQQQLAYLGHIIGKDGVTADPSKIADVLHWKIPQSVKQLRGFLGLAGYYRKFVRNFGTINKPLTQLLKKGVPFKWTAQMDEAFNALKQALVSAPVLALPDFSKTFTVETDACDMGIGAVLSQDRYPIAFVSKALGPKTRGLSTYEKEYLAILLAVDQWRSYLQHDEFVILTDHHSLMHITDQRLHTPLQHKAFTKLMGLQYKVCYRRGTSNAAADALSRRDEETNDQLWAVSECQPLWLTAVVKGYETYEQAQQLLTELALHPTAREHFRLVQGVLRYKGKIWIGHNLS |
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| Function | Retrovirus-related Pol polyprotein from transposon 17.6 [UniProtKB/Swiss-Prot:P04323] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0003681 | OsLiXu_03g0003681.01 | Chr03 | 2669319 | 2674594 | - | IsoSeq | ||
| CDS seq | atgcctgtcattgatgagcttctggatgagctttctagagctaagtatttctctaaactcgatttaagggcaggttatcaccagataaggctgcaacctggagaggagcacaagacagccttccaaactcactcgggccactatgagtatcgagtgatgtcctttgagttgactggagcaccagctacttttcagaaggcaatgaatGATaccctagcgacagtgctaagaaaatttacattggttttctttgatgacattctaatctatagccctgatctaccatcgcatattcagcatttagaacaagttttgcaactacttcaagctcaacaatggaaagtcaagttgagtaaatgttcctttgcacaacaacaactggcttacctaggccatatcattggcaaggatggagtaaccgctgatccttctaagattgctgatgtgctgcattggaaaattcctcagtcagtcaagcagttgaggggcttcctaggtttggcaggatattacaggaagtttgtgagaaactttggaactatcaacaaaccactcacccagctgcttaagaaaggggtgccctttaaatggacagcacaaatggatgaagctttcaatgccttgaagcaagctttggttagtgccccagttttggcactgcctgacttctcaaaaactttcactgtggaaacagatgcctgtgatatgggaataggggcagttttgtcccaggacaggtaccctattgcctttgttagcaaagcattaggtccaaaaaccagggggctgtctacatatgagaaggaatacctggctatcctattggcagtcgatcagtggagatcatatttgcagcatgatgagtttgtcatactcacagatcaccacagtctaatgcatatcactgaccaaagattacatactccgttgcaacataaggctttcactaagttgatgggactacagtataaggtttgttatcgaaggggaacctctaatgcagctgcagatgcattatcaagaagggatgaagagacaaatgatcaattgtgggctgtatccgaatgccaacccctttggttaacagcagtggtaaaagggtatgaaacttatgagcaggctcagcaactcttaactgaattggcattgcatcctactgccagggaacattttcgtttagtgcaaggggtattgcggtacaagggtaaaatttggattgggcataatttatcc
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| Protein seq | MPVIDELLDELSRAKYFSKLDLRAGYHQIRLQPGEEHKTAFQTHSGHYEYRVMSFELTGAPATFQKAMNDTLATVLRKFTLVFFDDILIYSPDLPSHIQHLEQVLQLLQAQQWKVKLSKCSFAQQQLAYLGHIIGKDGVTADPSKIADVLHWKIPQSVKQLRGFLGLAGYYRKFVRNFGTINKPLTQLLKKGVPFKWTAQMDEAFNALKQALVSAPVLALPDFSKTFTVETDACDMGIGAVLSQDRYPIAFVSKALGPKTRGLSTYEKEYLAILLAVDQWRSYLQHDEFVILTDHHSLMHITDQRLHTPLQHKAFTKLMGLQYKVCYRRGTSNAAADALSRRDEETNDQLWAVSECQPLWLTAVVKGYETYEQAQQLLTELALHPTAREHFRLVQGVLRYKGKIWIGHNLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.931604 | 0.723665 | 0.740611 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05340 | RBH | 0.660506 | 0.463661 | 0.165043 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003581 | RBH | 0.261426 | 0.210350 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0192200 | RBH | 0 | 0 | 0.00287 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003581 | RBH | 0.291781 | 0.379513 | 1.215315 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0042700 | RBH | 3.1335885 | 6.5523445 | 8.870105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003681 | RBH | 0.316122 | 0.281476 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003632 | RBH | 0.355494 | 4.667260 | 2.198761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
