Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsZS97_02G0376100 | OGI:02061040 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr02:22635698-22637013 | ||||||||
Gene Symbol | EL5, EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6, EL5.6, EL5.3, - | ||||||||||
DNA seq | GTAATTTTTCCTGCTCTATCAATATAACTTTGCACCGTTCCATGTGAGTCGTTAAAAAAAAAAGAAATTCATATTCGGCTCACAATTCATGGAACATACGGAGAGGGATGCTTCTCACTTGTCACTGCCATCCATACATTTCTCTTTGCTACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTGATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACAGGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCGGCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCGCGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCGGTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGCCTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGGGTCATCGAAGCCGCGGATTCGGGGATCTCGATCACCAGCGTGCTGCGGCCCTCCGCTGTCATGGTCACCGCGCCGGCGCCATGGTCGGACAGGCCGAGCAGGACGCTCGCCGGGAGGCTCACGGTGTAGCTCGCCGGCGGCTCCGGTGGGACGGGAGGAAGAGGCGGCGGCGGCGGCGGTGGCACGACGACGGTGAGGCGGCAGAGCGGGCAGGTGGAGTGGGAGCCGAGCCACATGTCGACGCACTCGGCGTGGAAGCCGTGGCCGCACCGGGGGAGGAACCTGGCCTCCTCGCCGTCCTCGAGCTCCGCGAGGCACACCGCGCACTCGACGCCGTCGTCGTCCTCCTCCTCCTCCTTCGCCGCCGCCGCCGCCGTGCTGCGGCTGTACACCGTAACCGGCAGCGACCGGAGCACCTCCGGGTCGACCCCTCCTCCCGTTCCACCGTCCCCGCCGCTCCCAGAGCGCGGCCGCGGCCGCCGCCCGCGCCCGCTCGTCGACGTCGTCGTCACGGCGCGGCGCCGCTCGTCGCAGTAGCACTGGAGCAGGACGAAGGCGAGCGTGAGCGCCGCGAAGACGATGAGCACGGCCGCCACGGTGGCGATGCCGCCGGCCGTCATGGCTGCCTGCCCTGCAGGCGCGGACACCGGCGACGGCGACGACGACGACGAAGACTCGTCCATGGCGGGGCCGCCCTGCTCGACACCCCGCACCATAATAATCGACCCGTCACATGCATATGTGACC
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CDS seq | ATGGTGCGGGGTGTCGAGCAGGGCGGCCCCGCCATGGACGAGTCTTCGTCGTCGTCGTCGCCGTCGCCGGTGTCCGCGCCTGCAGGGCAGGCAGCCATGACGGCCGGCGGCATCGCCACCGTGGCGGCCGTGCTCATCGTCTTCGCGGCGCTCACGCTCGCCTTCGTCCTGCTCCAGTGCTACTGCGACGAGCGGCGCCGCGCCGTGACGACGACGTCGACGAGCGGGCGCGGGCGGCGGCCGCGGCCGCGCTCTGGGAGCGGCGGGGACGGTGGAACGGGAGGAGGGGTCGACCCGGAGGTGCTCCGGTCGCTGCCGGTTACGGTGTACAGCCGCAGCACGGCGGCGGCGGCGGCGAAGGAGGAGGAGGAGGACGACGACGGCGTCGAGTGCGCGGTGTGCCTCGCGGAGCTCGAGGACGGCGAGGAGGCCAGGTTCCTCCCCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGCTCCCACTCCACCTGCCCGCTCTGCCGCCTCACCGTCGTCGTGCCACCGCCGCCGCCGCCGCCTCTTCCTCCCGTCCCACCGGAGCCGCCGGCGAGCTACACCGTGAGCCTCCCGGCGAGCGTCCTGCTCGGCCTGTCCGACCATGGCGCCGGCGCGGTGACCATGACAGCGGAGGGCCGCAGCACGCTGGTGATCGAGATCCCCGAATCCGCGGCTTCGATGACCCCGCGCGACGCGGCGGCGAGGTCGTCGCCGAGCTTGGCGCGGCTGAGGTCACTGAGAAGGCTCTGGAGCTTCGGGCGGCAAGGGGCGGCGGGGTCGACGTCGTCATGCTCCTGCGCCACCGGAGGAGACAACGACGACGGCGACGTCGAGCACGGTGTCAGCGTCACCGTCGCCATCCGCGCCGTGGAGGCGGCAACGCCGGCACGGCCACCGGAGGCCGAGGCCGGTGCAAGAACCGCCGCCGCGCATGTCCGGAATTGA
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Protein seq | MVRGVEQGGPAMDESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPPPPLPPVPPEPPASYTVSLPASVLLGLSDHGAGAVTMTAEGRSTLVIEIPESAASMTPRDAAARSSPSLARLRSLRRLWSFGRQGAAGSTSSCSCATGGDNDDGDVEHGVSVTVAIRAVEAATPARPPEAEAGARTAAAHVRN |
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Function | E3 ubiquitin-protein ligase EL5 [UniProtKB/Swiss-Prot:Q9LRB7] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsZS97_02G0376100 | OsZS97_02T0376100.1 | Chr02 | 22635698 | 22637013 | - | makerRMon | ||
CDS seq | ATGGTGCGGGGTGTCGAGCAGGGCGGCCCCGCCATGGACGAGTCTTCGTCGTCGTCGTCGCCGTCGCCGGTGTCCGCGCCTGCAGGGCAGGCAGCCATGACGGCCGGCGGCATCGCCACCGTGGCGGCCGTGCTCATCGTCTTCGCGGCGCTCACGCTCGCCTTCGTCCTGCTCCAGTGCTACTGCGACGAGCGGCGCCGCGCCGTGACGACGACGTCGACGAGCGGGCGCGGGCGGCGGCCGCGGCCGCGCTCTGGGAGCGGCGGGGACGGTGGAACGGGAGGAGGGGTCGACCCGGAGGTGCTCCGGTCGCTGCCGGTTACGGTGTACAGCCGCAGCACGGCGGCGGCGGCGGCGAAGGAGGAGGAGGAGGACGACGACGGCGTCGAGTGCGCGGTGTGCCTCGCGGAGCTCGAGGACGGCGAGGAGGCCAGGTTCCTCCCCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGCTCCCACTCCACCTGCCCGCTCTGCCGCCTCACCGTCGTCGTGCCACCGCCGCCGCCGCCGCCTCTTCCTCCCGTCCCACCGGAGCCGCCGGCGAGCTACACCGTGAGCCTCCCGGCGAGCGTCCTGCTCGGCCTGTCCGACCATGGCGCCGGCGCGGTGACCATGACAGCGGAGGGCCGCAGCACGCTGGTGATCGAGATCCCCGAATCCGCGGCTTCGATGACCCCGCGCGACGCGGCGGCGAGGTCGTCGCCGAGCTTGGCGCGGCTGAGGTCACTGAGAAGGCTCTGGAGCTTCGGGCGGCAAGGGGCGGCGGGGTCGACGTCGTCATGCTCCTGCGCCACCGGAGGAGACAACGACGACGGCGACGTCGAGCACGGTGTCAGCGTCACCGTCGCCATCCGCGCCGTGGAGGCGGCAACGCCGGCACGGCCACCGGAGGCCGAGGCCGGTGCAAGAACCGCCGCCGCGCATGTCCGGAATTGA
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Protein seq | MVRGVEQGGPAMDESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPPPPLPPVPPEPPASYTVSLPASVLLGLSDHGAGAVTMTAEGRSTLVIEIPESAASMTPRDAAARSSPSLARLRSLRRLWSFGRQGAAGSTSSCSCATGGDNDDGDVEHGVSVTVAIRAVEAATPARPPEAEAGARTAAAHVRN
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 1.3070655 | 16.2969255 | 0.713429 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0561000 | RBH | 0.019105 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35329 | RBH | 0.420086 | 0.491889 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os02g0561800 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021390 | RBH | 0.0 | 0.0 | 0.201336 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021490 | RBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021490 | RBH | 0.033371 | 0.0 | 0.297297 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021210 | RBH | 0.0 | 0.038049 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021140 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0349400 | RBH | 1.145612 | 17.902112 | 0.2673035 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020870 | RBH | 0.0 | 0.0 | 0.050181 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0341400 | RBH | 0.1377785 | 0.0260265 | 0.794781 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021330 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021070 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021530 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021220 | RBH | 0.148052 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021060 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021490 | RBH | 0.123940 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021270 | RBH | 0.0 | 0.0 | 0.620485 |