Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0561800 | OGI:02061040 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:21295214-21296474 | ||||||||
| Gene Symbol | EL5.6 | ||||||||||
| DNA seq | TAGTCAAGATTTGGCTGAAATTCATATTCGGCTCACAATTCATGGAACATACGGAGAGGGATGCTTCTCACTGCCATCCATACATTTCTCTTTGCTACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTGATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACAGGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCGGCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCGCGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCGGTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGCCTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGGGTCGTCGAAGCCGCGGATTCGGGGATCTCGATCACCAGCGTGCTGCGGCCCTCCGCTGTCATGGTCACCGCGCCGGCGCCATGGTCGGACAGGCCGAGCAGGACGCTCGCCGGGAGGCTCACGGTGTAGCTCGCCGGCGGCTCCGGCGGGACGGGAGGAAGAGGCGGCGGCGGCACGACGACGGTGAGGCGGCAGAGCGGGCAGGTGGAGTGGGAGCCGAGCCACATGTCGACGCACTCGGCGTGGAAGCCGTGGCCGCACCGGGGGAGGAACCTGGCCTCCTCGCCGTCCTCGAGCTCCGCGAGGCACACCGCGCACTCGACGCCGTCGTCGTCCTCCTCCTCCTCCTCCTTCGCCGCCGCCGCCGCCGTGCTGCGGCTGTACACCGTGACCGGCAGCGACCGGAGCACCTCCGGGTCGACCCCTCCTCCCGTTCCACCGTCCCCGCCGCTCCCAGAGCGCCGCCGCGGCCGCGGCCGCCGCCCGCGCCCGCTCGTCGACGTCGTCGTCACGGCGCGGCGCCGCTCGTCGCAGTAGCACTGGAGCAGGACGAAGGCGAGCGTGAGCGCCGCGAAGACGATGAGCACGGCCGCCACGGTGGCGATGCCGCCGGCCGTCATGGCTGCCTGCCCTGCAGGCGCGGACACCGGCGACGGCGACGACGACGACGAAGACTCGTCCATGGCGGGGCCGCCCTGCTCGACACCCCGCACCATAATAATCGACCGTCACATGCATATGTGACC
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| CDS seq | ATGGTGCGGGGTGTCGAGCAGGGCGGCCCCGCCATGGACGAGTCTTCGTCGTCGTCGTCGCCGTCGCCGGTGTCCGCGCCTGCAGGGCAGGCAGCCATGACGGCCGGCGGCATCGCCACCGTGGCGGCCGTGCTCATCGTCTTCGCGGCGCTCACGCTCGCCTTCGTCCTGCTCCAGTGCTACTGCGACGAGCGGCGCCGCGCCGTGACGACGACGTCGACGAGCGGGCGCGGGCGGCGGCCGCGGCCGCGGCGGCGCTCTGGGAGCGGCGGGGACGGTGGAACGGGAGGAGGGGTCGACCCGGAGGTGCTCCGGTCGCTGCCGGTCACGGTGTACAGCCGCAGCACGGCGGCGGCGGCGGCGAAGGAGGAGGAGGAGGAGGACGACGACGGCGTCGAGTGCGCGGTGTGCCTCGCGGAGCTCGAGGACGGCGAGGAGGCCAGGTTCCTCCCCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGCTCCCACTCCACCTGCCCGCTCTGCCGCCTCACCGTCGTCGTGCCGCCGCCGCCTCTTCCTCCCGTCCCGCCGGAGCCGCCGGCGAGCTACACCGTGAGCCTCCCGGCGAGCGTCCTGCTCGGCCTGTCCGACCATGGCGCCGGCGCGGTGACCATGACAGCGGAGGGCCGCAGCACGCTGGTGATCGAGATCCCCGAATCCGCGGCTTCGACGACCCCGCGCGACGCGGCGGCGAGGTCGTCGCCGAGCTTGGCGCGGCTGAGGTCACTGAGAAGGCTCTGGAGCTTCGGGCGGCAAGGGGCGGCGGGGTCGACGTCGTCATGCTCCTGCGCCACCGGAGGAGACAACGACGACGGCGACGTCGAGCACGGTGTCAGCGTCACCGTCGCCATCCGCGCCGTGGAGGCGGCAACGCCGGCACGGCCACCGGAGGCCGAGGCCGGTGCAAGAACCGCCGCCGCGCATGTCCGGAATTGA
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| Protein seq | MVRGVEQGGPAMDESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPEPPASYTVSLPASVLLGLSDHGAGAVTMTAEGRSTLVIEIPESAASTTPRDAAARSSPSLARLRSLRRLWSFGRQGAAGSTSSCSCATGGDNDDGDVEHGVSVTVAIRAVEAATPARPPEAEAGARTAAAHVRN |
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| Function | E3 ubiquitin-protein ligase EL5 [UniProtKB/Swiss-Prot:Q9LRB7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0561800 | Os02t0561800-01 | Chr02 | 21295214 | 21296474 | - | irgsp1_rep | ||
| CDS seq | ATGGTGCGGGGTGTCGAGCAGGGCGGCCCCGCCATGGACGAGTCTTCGTCGTCGTCGTCGCCGTCGCCGGTGTCCGCGCCTGCAGGGCAGGCAGCCATGACGGCCGGCGGCATCGCCACCGTGGCGGCCGTGCTCATCGTCTTCGCGGCGCTCACGCTCGCCTTCGTCCTGCTCCAGTGCTACTGCGACGAGCGGCGCCGCGCCGTGACGACGACGTCGACGAGCGGGCGCGGGCGGCGGCCGCGGCCGCGGCGGCGCTCTGGGAGCGGCGGGGACGGTGGAACGGGAGGAGGGGTCGACCCGGAGGTGCTCCGGTCGCTGCCGGTCACGGTGTACAGCCGCAGCACGGCGGCGGCGGCGGCGAAGGAGGAGGAGGAGGAGGACGACGACGGCGTCGAGTGCGCGGTGTGCCTCGCGGAGCTCGAGGACGGCGAGGAGGCCAGGTTCCTCCCCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGCTCCCACTCCACCTGCCCGCTCTGCCGCCTCACCGTCGTCGTGCCGCCGCCGCCTCTTCCTCCCGTCCCGCCGGAGCCGCCGGCGAGCTACACCGTGAGCCTCCCGGCGAGCGTCCTGCTCGGCCTGTCCGACCATGGCGCCGGCGCGGTGACCATGACAGCGGAGGGCCGCAGCACGCTGGTGATCGAGATCCCCGAATCCGCGGCTTCGACGACCCCGCGCGACGCGGCGGCGAGGTCGTCGCCGAGCTTGGCGCGGCTGAGGTCACTGAGAAGGCTCTGGAGCTTCGGGCGGCAAGGGGCGGCGGGGTCGACGTCGTCATGCTCCTGCGCCACCGGAGGAGACAACGACGACGGCGACGTCGAGCACGGTGTCAGCGTCACCGTCGCCATCCGCGCCGTGGAGGCGGCAACGCCGGCACGGCCACCGGAGGCCGAGGCCGGTGCAAGAACCGCCGCCGCGCATGTCCGGAATTGA
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| Protein seq | MVRGVEQGGPAMDESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPEPPASYTVSLPASVLLGLSDHGAGAVTMTAEGRSTLVIEIPESAASTTPRDAAARSSPSLARLRSLRRLWSFGRQGAAGSTSSCSCATGGDNDDGDVEHGVSVTVAIRAVEAATPARPPEAEAGARTAAAHVRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0560600 | RBH | 0.115782 | 0.138856 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35329 | SBH | 0.420086 | 0.491889 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0450400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021390 | RBH | 0.0 | 0.0 | 0.201336 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021490 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021490 | SBH | 0.033371 | 0.0 | 0.297297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021210 | RBH | 0.0 | 0.038049 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0349400 | SBH | 1.145612 | 17.902112 | 0.2673035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020870 | SBH | 0.0 | 0.0 | 0.050181 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0376100 | RBH | 1.3070655 | 16.2969255 | 0.713429 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021330 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021070 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021530 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021220 | SBH | 0.148052 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021060 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021490 | SBH | 0.123940 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021270 | SBH | 0.0 | 0.0 | 0.620485 |
