Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsZS97_02G0060000		OGI:02001240 \| 16/16			Zhenshan 97 \| ZS97RS3 \| HZAU			Chr02:3307524-3310998		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		ATGGCCGCCACCTCCGGCGAGCTCCTCACCCACGCAACCATGGTGCTCTCGCTCTCTCCGATTCTCCAGCACAAACCGACGGCGAGCTGCCCTCCTTATCCTCCGATGTCGGATTTAAGCAAAGGCGAGATAAGGATCTGCCATCTCCTTATAATAAATAGTACTATTAGCATCCATTTGATATTGGCAATTCGGCTTTGTGTATAACATCATTGGTGATGTGGAATGGTGACGCTGTCAGTCAGTCAGTCAAAGTAATCAACCGCGTGGGGTGCTTTTATCTCGTGAATCTTTCCTTTCCAAGATGGGTGGTGAGCTGCGCAATAGATTAGAGAGTTGGGTGCCCATTATCATTATATTGTCATTATAAATTCATCCATCCTGCAAAGTTTTTCTTGACGCCGAGCATGTCAATGGGCAAACCAATCCTCACTCAGTCTCGGTCTCTTCGCCCGGGTGACCGATAGTGGCATGTTAATGCAGCTTTAGCTTCCAACTTTCAGTTAGAAATTGATCCCACGGCCTCCCTTCAATTTTACTTTTTTTCTTTTTGTTTAACACTTGTTTAGCTTGCATATGTTTTTTAAATATTTCGTCAGTACATAGTCATCCTGTAGCAACACCCAGAATATGTGTACAAAGTGCTACCTACGGAGTATTTGACACTGGGAATTCAACTTATTATCAACAATTCTTATCTATACTAACATCCTTGGTGATGAGACAGTCAAGTCATCAACTATGTGGACTGTGGAGTGTCTTTATTCTGTGAATTTTCCCCCAGCCATATAAACATTCCATGGTCTGGTATGTCCCTCATGGTCCATCTGTCTAGCCGAGCCCGGAGCTTTACTGAGGCCGTTTTTAGTTCCTTTTTTATTTTTTTTAAAGTATACAGACACACATTTGAATTATTAAATATAGACTAATAACAAAACAAATTACAGATTCCAACTATAAACTGCGAGACGAATCTATTAAGCCTAATTAATCCGTCATTGGCAAATGTTTACTGTAGCACCACATTATCAAATCATGGCGTAATTATGCTCAAAAGATTCGTCTCGCAATTTACATGCAAACCGTGTAATTAGTTTTTTTTCCACATTTAATGCTTCATGCATATGTCCAAATATTTAATGTGGTGAAATTTTTGAAAGTTTGAAAGGAAAACACGGCCTGAGTCATCTGTACGCCTGCCAGCCCATATGCATGATCTGAGCAACCTTGCAGGCTCTGCTGCGTTGATGGTCAGTCAACTTCACTCAACAAGTCACTCACTCCAGTCCCAGTCAATCTAGGTGGCTTACAGTATTTGAATGAATTTGCTATACTATTATATAGGAGTATTCTCCAACCGATCCTTCCTCTCGGACGCAGCAATGGCAATGGCAATGACGATGCTCTTTAGAATCTGAGTCTTTCTGCTGCTGTTTTGCACAGCTAAGGCTACTGATGATTCAGGAGCAGAAACTGAAGCAGAAGCACTCCTCCGATGGAAGTCCAATTTGATCGACGCCACCAACTCGTTGTCGTCATGGTCGATTGCCAACTCCACCTGCTCTTGGTTCGGTGTCACCTGTGACGCCGCCGGCCATGTCACTGAGCTCGACCTTCTTGGTGCCGACATCAATGGTACGCTTGACGCTCTCTACTCTGCTGCATTCGAAAACCTCACCACCATCGACCTCAGCCACAATAATCTTGATGGTGCCATTCCAGCAAATATTTCTATGTTGCACACCCTCACCGTTCTAGATTTGAGCGTCAATAATCTTACTGGTACGATCCCCTACCAACTCAGCAAGCTCCCTAGACTCGCCCACTTAAATCTTGGAGATAACCACTTGACCAATCCGGAATATGCCATGTTCTTCACACCCATGCCCTGTTTGGAATTCCTATCTCTATTTCACAATCATCTCAATGGTACTTTTCCAGAATTCATCCTCAATAGCACTAGTTTGAGGATGGAGCACCTCGATTTATCGGGTAATGCTTTCTCAGGGCCCATACCAGATTCACTACCAGAGATTGCTCCAAATTTGAGGCATCTAGATCTGTCGTACAATGGATTCCATGGGTCCATACCACATTCACTCTCAAGGCTGCAAAAGCTCCGAGAACTATATCTGCACAGAAACAACCTCACCCGAGCAATCCCAGAGGAGCTTGGGAACCTAACCAATCTTGAGGAGCTGGTCCTGTCAAGCAACCGGTTAGTTGGAAGTTTGCCACCATCTTTTGCCAGGATGCAACAATTATCATTTTTTGCGATAGACAATAACTACATCAATGGTAGTATCCCGTTGGAGATGTTTTCAAACTGCACTCAGCTCATGATTTTTGATGTTTCCAACAACATGTTAACTGGAAGCATCCCATCACTGATCAGCAACTGGACACACCTACAGTACTTGTTCCTCTTCAACAACACATTTACCGGTGCAATCCCAAGGGAGATAGGAAACTTAGCACAATTACTTTCAGTGGACATGTCACAAAATCTCTTTACCGGAAAGATACCATTAAATATCTGCAATGCATCTTTGCTATACCTTGTAATCAGTCACAACTATCTGGAAGGTGAGCTCCCTGAATGCTTGTGGAATTTGAAAGATCTCGGATACATGGATTTGTCAAGCAACGCTTTTTCTGGAGAAGTTACAACCTCAAGTAACTATGAATCCTCCCTAAAATCACTGTACCTGTCAAATAATAACTTATCGGGTCGTTTTCCAACGGTATTGAAGAACCTCAAAAACCTAACTGTGTTGGATCTTGTGCATAATAAGATTTCTGGTGTGATTCCTTCATGGATTGGGGAAAGCAATCCTTTGCTGAGGATTCTCCGATTACGATCAAACTTGTTCCATGGAAGTATTCCTTGTCAACTGTCAAAACTCTCCCAACTCCAACTGCTTGATCTGGCTGAAAATAATTTTACAGGTCCTGTACCAAGTAGTTTCGCCAACTTATCCTCCATGCAGCCTGAAACAAGAGACAAATTCTCCTCCGGTGAAACATATTACATTAACATTATTTGGAAGGGAATGGAGTACACTTTTCAGGAAAGAGATGATTGTGTTATTGGTATTGATCTTTCAAGCAATTCTCTCTCTGGTGAGATCCCTTCAGAGTTGACAAATCTTAGAGGCCTTCAGTTCTTAAATATGTCAAGAAATGTTCTATATGGTGGCATCCCAAATGACATTGGCCATCTACATGTTGTAGAGTCTCTTGACCTGTCTTGCAATAGACTCTTGGGTCCTATTCCTCCTAGCATATCAAACTTGACGGGCCTCAGCAAGCTTAATCTCTCGAACAACCTTCTATCAGGAGAGATACCTATAGGTAATTGTTGATGTAATATGCACTTGTATCGGGGACCTTCTTGCATATGTAGCTAAGTGAAATAGTGTGTGTGTGGCTGTGAACAACACACCAGAAAAAATCCCCAAAACTGAACTTTATG More
CDS seq		ATGGCCGCCACCTCCGGCGAGCTCCTCACCCACGCAACCATGGTGCTCTCGCTCTCTCCGATTCTCCAGCACAAACCGACGGCGAGCTGCCCTCCTTATCCTCCGATGTCGGATTTAAGCAAAGGCGAGATAAGGATCTGCCATCTCCTTATAATAAATACTAAGGCTACTGATGATTCAGGAGCAGAAACTGAAGCAGAAGCACTCCTCCGATGGAAGTCCAATTTGATCGACGCCACCAACTCGTTGTCGTCATGGTCGATTGCCAACTCCACCTGCTCTTGGTTCGGTGTCACCTGTGACGCCGCCGGCCATGTCACTGAGCTCGACCTTCTTGGTGCCGACATCAATGGTACGCTTGACGCTCTCTACTCTGCTGCATTCGAAAACCTCACCACCATCGACCTCAGCCACAATAATCTTGATGGTGCCATTCCAGCAAATATTTCTATGTTGCACACCCTCACCGTTCTAGATTTGAGCGTCAATAATCTTACTGGTACGATCCCCTACCAACTCAGCAAGCTCCCTAGACTCGCCCACTTAAATCTTGGAGATAACCACTTGACCAATCCGGAATATGCCATGTTCTTCACACCCATGCCCTGTTTGGAATTCCTATCTCTATTTCACAATCATCTCAATGGTACTTTTCCAGAATTCATCCTCAATAGCACTAGTTTGAGGATGGAGCACCTCGATTTATCGGGTAATGCTTTCTCAGGGCCCATACCAGATTCACTACCAGAGATTGCTCCAAATTTGAGGCATCTAGATCTGTCGTACAATGGATTCCATGGGTCCATACCACATTCACTCTCAAGGCTGCAAAAGCTCCGAGAACTATATCTGCACAGAAACAACCTCACCCGAGCAATCCCAGAGGAGCTTGGGAACCTAACCAATCTTGAGGAGCTGGTCCTGTCAAGCAACCGGTTAGTTGGAAGTTTGCCACCATCTTTTGCCAGGATGCAACAATTATCATTTTTTGCGATAGACAATAACTACATCAATGGTAGTATCCCGTTGGAGATGTTTTCAAACTGCACTCAGCTCATGATTTTTGATGTTTCCAACAACATGTTAACTGGAAGCATCCCATCACTGATCAGCAACTGGACACACCTACAGTACTTGTTCCTCTTCAACAACACATTTACCGGTGCAATCCCAAGGGAGATAGGAAACTTAGCACAATTACTTTCAGTGGACATGTCACAAAATCTCTTTACCGGAAAGATACCATTAAATATCTGCAATGCATCTTTGCTATACCTTGTAATCAGTCACAACTATCTGGAAGGTGAGCTCCCTGAATGCTTGTGGAATTTGAAAGATCTCGGATACATGGATTTGTCAAGCAACGCTTTTTCTGGAGAAGTTACAACCTCAAGTAACTATGAATCCTCCCTAAAATCACTGTACCTGTCAAATAATAACTTATCGGGTCGTTTTCCAACGGTATTGAAGAACCTCAAAAACCTAACTGTGTTGGATCTTGTGCATAATAAGATTTCTGGTGTGATTCCTTCATGGATTGGGGAAAGCAATCCTTTGCTGAGGATTCTCCGATTACGATCAAACTTGTTCCATGGAAGTATTCCTTGTCAACTGTCAAAACTCTCCCAACTCCAACTGCTTGATCTGGCTGAAAATAATTTTACAGGTCCTGTACCAAGTAGTTTCGCCAACTTATCCTCCATGCAGCCTGAAACAAGAGACAAATTCTCCTCCGGTGAAACATATTACATTAACATTATTTGGAAGGGAATGGAGTACACTTTTCAGGAAAGAGATGATTGTGTTATTGGTATTGATCTTTCAAGCAATTCTCTCTCTGGTGAGATCCCTTCAGAGTTGACAAATCTTAGAGGCCTTCAGTTCTTAAATATGTCAAGAAATGTTCTATATGGTGGCATCCCAAATGACATTGGCCATCTACATGTTGTAGAGTCTCTTGACCTGTCTTGCAATAGACTCTTGGGTCCTATTCCTCCTAGCATATCAAACTTGACGGGCCTCAGCAAGCTTAATCTCTCGAACAACCTTCTATCAGGAGAGATACCTATAGGTAATTGTTGA More
Protein seq		MAATSGELLTHATMVLSLSPILQHKPTASCPPYPPMSDLSKGEIRICHLLIINTKATDDSGAETEAEALLRWKSNLIDATNSLSSWSIANSTCSWFGVTCDAAGHVTELDLLGADINGTLDALYSAAFENLTTIDLSHNNLDGAIPANISMLHTLTVLDLSVNNLTGTIPYQLSKLPRLAHLNLGDNHLTNPEYAMFFTPMPCLEFLSLFHNHLNGTFPEFILNSTSLRMEHLDLSGNAFSGPIPDSLPEIAPNLRHLDLSYNGFHGSIPHSLSRLQKLRELYLHRNNLTRAIPEELGNLTNLEELVLSSNRLVGSLPPSFARMQQLSFFAIDNNYINGSIPLEMFSNCTQLMIFDVSNNMLTGSIPSLISNWTHLQYLFLFNNTFTGAIPREIGNLAQLLSVDMSQNLFTGKIPLNICNASLLYLVISHNYLEGELPECLWNLKDLGYMDLSSNAFSGEVTTSSNYESSLKSLYLSNNNLSGRFPTVLKNLKNLTVLDLVHNKISGVIPSWIGESNPLLRILRLRSNLFHGSIPCQLSKLSQLQLLDLAENNFTGPVPSSFANLSSMQPETRDKFSSGETYYINIIWKGMEYTFQERDDCVIGIDLSSNSLSGEIPSELTNLRGLQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLLGPIPPSISNLTGLSKLNLSNNLLSGEIPIGNC
Function		LRR receptor-like serine/threonine-protein kinase FLS2 [UniProtKB/Swiss-Prot:Q0JA29]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_02G0060000	OsZS97_02T0060000.1	Chr02	3307524	3310998	+	makerRMon
CDS seq	ATGGCCGCCACCTCCGGCGAGCTCCTCACCCACGCAACCATGGTGCTCTCGCTCTCTCCGATTCTCCAGCACAAACCGACGGCGAGCTGCCCTCCTTATCCTCCGATGTCGGATTTAAGCAAAGGCGAGATAAGGATCTGCCATCTCCTTATAATAAATACTAAGGCTACTGATGATTCAGGAGCAGAAACTGAAGCAGAAGCACTCCTCCGATGGAAGTCCAATTTGATCGACGCCACCAACTCGTTGTCGTCATGGTCGATTGCCAACTCCACCTGCTCTTGGTTCGGTGTCACCTGTGACGCCGCCGGCCATGTCACTGAGCTCGACCTTCTTGGTGCCGACATCAATGGTACGCTTGACGCTCTCTACTCTGCTGCATTCGAAAACCTCACCACCATCGACCTCAGCCACAATAATCTTGATGGTGCCATTCCAGCAAATATTTCTATGTTGCACACCCTCACCGTTCTAGATTTGAGCGTCAATAATCTTACTGGTACGATCCCCTACCAACTCAGCAAGCTCCCTAGACTCGCCCACTTAAATCTTGGAGATAACCACTTGACCAATCCGGAATATGCCATGTTCTTCACACCCATGCCCTGTTTGGAATTCCTATCTCTATTTCACAATCATCTCAATGGTACTTTTCCAGAATTCATCCTCAATAGCACTAGTTTGAGGATGGAGCACCTCGATTTATCGGGTAATGCTTTCTCAGGGCCCATACCAGATTCACTACCAGAGATTGCTCCAAATTTGAGGCATCTAGATCTGTCGTACAATGGATTCCATGGGTCCATACCACATTCACTCTCAAGGCTGCAAAAGCTCCGAGAACTATATCTGCACAGAAACAACCTCACCCGAGCAATCCCAGAGGAGCTTGGGAACCTAACCAATCTTGAGGAGCTGGTCCTGTCAAGCAACCGGTTAGTTGGAAGTTTGCCACCATCTTTTGCCAGGATGCAACAATTATCATTTTTTGCGATAGACAATAACTACATCAATGGTAGTATCCCGTTGGAGATGTTTTCAAACTGCACTCAGCTCATGATTTTTGATGTTTCCAACAACATGTTAACTGGAAGCATCCCATCACTGATCAGCAACTGGACACACCTACAGTACTTGTTCCTCTTCAACAACACATTTACCGGTGCAATCCCAAGGGAGATAGGAAACTTAGCACAATTACTTTCAGTGGACATGTCACAAAATCTCTTTACCGGAAAGATACCATTAAATATCTGCAATGCATCTTTGCTATACCTTGTAATCAGTCACAACTATCTGGAAGGTGAGCTCCCTGAATGCTTGTGGAATTTGAAAGATCTCGGATACATGGATTTGTCAAGCAACGCTTTTTCTGGAGAAGTTACAACCTCAAGTAACTATGAATCCTCCCTAAAATCACTGTACCTGTCAAATAATAACTTATCGGGTCGTTTTCCAACGGTATTGAAGAACCTCAAAAACCTAACTGTGTTGGATCTTGTGCATAATAAGATTTCTGGTGTGATTCCTTCATGGATTGGGGAAAGCAATCCTTTGCTGAGGATTCTCCGATTACGATCAAACTTGTTCCATGGAAGTATTCCTTGTCAACTGTCAAAACTCTCCCAACTCCAACTGCTTGATCTGGCTGAAAATAATTTTACAGGTCCTGTACCAAGTAGTTTCGCCAACTTATCCTCCATGCAGCCTGAAACAAGAGACAAATTCTCCTCCGGTGAAACATATTACATTAACATTATTTGGAAGGGAATGGAGTACACTTTTCAGGAAAGAGATGATTGTGTTATTGGTATTGATCTTTCAAGCAATTCTCTCTCTGGTGAGATCCCTTCAGAGTTGACAAATCTTAGAGGCCTTCAGTTCTTAAATATGTCAAGAAATGTTCTATATGGTGGCATCCCAAATGACATTGGCCATCTACATGTTGTAGAGTCTCTTGACCTGTCTTGCAATAGACTCTTGGGTCCTATTCCTCCTAGCATATCAAACTTGACGGGCCTCAGCAAGCTTAATCTCTCGAACAACCTTCTATCAGGAGAGATACCTATAGGTAATTGTTGA More
Protein seq	MAATSGELLTHATMVLSLSPILQHKPTASCPPYPPMSDLSKGEIRICHLLIINTKATDDSGAETEAEALLRWKSNLIDATNSLSSWSIANSTCSWFGVTCDAAGHVTELDLLGADINGTLDALYSAAFENLTTIDLSHNNLDGAIPANISMLHTLTVLDLSVNNLTGTIPYQLSKLPRLAHLNLGDNHLTNPEYAMFFTPMPCLEFLSLFHNHLNGTFPEFILNSTSLRMEHLDLSGNAFSGPIPDSLPEIAPNLRHLDLSYNGFHGSIPHSLSRLQKLRELYLHRNNLTRAIPEELGNLTNLEELVLSSNRLVGSLPPSFARMQQLSFFAIDNNYINGSIPLEMFSNCTQLMIFDVSNNMLTGSIPSLISNWTHLQYLFLFNNTFTGAIPREIGNLAQLLSVDMSQNLFTGKIPLNICNASLLYLVISHNYLEGELPECLWNLKDLGYMDLSSNAFSGEVTTSSNYESSLKSLYLSNNNLSGRFPTVLKNLKNLTVLDLVHNKISGVIPSWIGESNPLLRILRLRSNLFHGSIPCQLSKLSQLQLLDLAENNFTGPVPSSFANLSSMQPETRDKFSSGETYYINIIWKGMEYTFQERDDCVIGIDLSSNSLSGEIPSELTNLRGLQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLLGPIPPSISNLTGLSKLNLSNNLLSGEIPIGNC More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0	0	0.272569

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0161500	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g06600	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0161500	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0004770	RBH	0.0	0.000000	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0004960	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0004770	RBH	0.0	0.000000	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0004670	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0004720	RBH	0.0	0.0	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0056900	SBH	0.077009	0.213037	0.6367415
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0004680	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0059600	RBH	0	0	0.0230675
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0005080	RBH	0.000000	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0004660	SBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0004980	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0004920	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0004690	RBH	0.000000	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G004740	SBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0004700	SBH	0.0	0.0	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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