Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0194800 | OGI:01035810 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:11994718-12000891 | ||||||||
| Gene Symbol | SRP20, Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20 | ||||||||||
| DNA seq | GGGAGTAATATTATTGATTTATCCGTCGCTTTCGAAATGGGCACCACGCACGCATCTCAAAGCCACACACGCGTCTCCACAACACGTCCCTCCAGGTCCAACCCCACCACATGTATCGGTTTCTCGTGGGCGGCCAGATTTTTGTCGCAGGTCGGTTTCGTTTCCGCTCTCCGCTCCACGCGGCGTCGCCTCCGGAGCCCCCAGAAGCTTCTCGACCCACCACCACCGCTCTCCCTCTCCCCGTCAGGTGCGTTCGTCGGAAATCATCGGGAAAAACCCCGAAATCCTCTCCCAGCTTTCCCTTTTTTTTTTCCCTTCTTCTCCGCGCGCGTGTTCTCCTCGATCTCTCCGATCATCATCGCGTGTGGTGGCCGATTGGCTGCGGTTCCCTTCCCGGAAATTCTGCGGCGCGCGCCGCCATTTTTATCCGTCTGTCTACAGGGTAGGGAGTTCTCAGATTAGAAACCAGGGGTTCTCCCGTTTTGGCGCTAGTTATGGTAGAGATTTCGTTACCTTTGCATATGCCATGGCTTCGTCGGCTCTATGCACGGAGCCTATGTATGTATGTATGTATGCTTTTATTTTTAAGTTTGTCTCGTCTAGAGTACGCGGTGGCGATGGGAAACAGCCGCTAGATTTGTTTATTGTTTCTTTACCCTAATCACAGGTATGGGTATTTGAGATTAGTTACGAAACATCTTAGATATATGCGGCTATTCAGTTTTTTTTTAATGTGCAAGAATCCAAAAGTCTATTAATTAGCATGTAAAAGGACTTGTGCTGATAAATTCTTTAGTTTTTAGTACAAGTGTCTGTATCTAGTTTCAATACAAGTTGCAATCCAGACTACGTTAATAACACTAAAAGATTGTATTGATACAAATCCATGATTATTATGGCGCATTGAAGAGAGGAAACAGAGGAAGGTAGGCTTGTCCTGCACGGCTTGAAGCTCTGCTTGCCTTGGCCAAGGTTTGGACAGAGGCCCTTTTGAGTTCTATACACTGGTTGATTACTCCCTGTTACAAATCTGAGCAATCTTTATCGACGAGGGCCTAGCTAATAATCAGGAAAAATAGAGATAAAGTGGAAAGTAGATAACAAACGCCAAACTAGGAAATAGATGACTGCATATCTTTCAGCCGGATATGGTCCCTCCTGCTGTAGGCGCGGACCCAGAATGCTTGTACAGCTGGTATTTATACCTATTTGGCAGGTAGATAATGATGATTGAACATGGTATTGGTGCTTTGGGTGACAGTTAAATATTTCTAAGGAAATCACTGCACAAATATCATTTTTTTTGTTTGGGAAATATCTTGTTTTTGTTTTGAAAAATTTAAAGTTTATGGTGAAATCTCTTTTGTGCAGCCTTGGTATTATGTAAATCTCCAAATTCTGTAGTTTAGTGTTATACTGTCGAAATTTGCCCTTTCCCCAATCTTTGCTGTTGTTTGACAATATGCGCCTACACAAAATTAGTACAGTGCTACGCTCCTTTGTGCTTGAAATGTTTCCCCATATTATTTATTAACAGAATCTTGAATTTACAAGGTCATTTTATCTTGCATATTTGCATCTATAATTTTAGTTGACCTGCTTTAACTCCTATATATGCAGAAACAATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGGTGAGCTTTACTGCTTTACAATCTACCTCAGTTCTTCTCATAGGCAACTACCATTTCAATCTGGTCGTAGCTGTATAGGCATAATACATTGCTTATTTTCCTACCTGTTAAGTTGCCTTAGCTTATTAATGTGAGAAATAGCTAGCGGTTGAAGGATTTAAATCACTATTATGCTAGTGGTTGAAGGATTTAAATTATTATTATTATAGTATTATAAGAGTTATAAAGGATTATTGTTCTGTAATTCGTGGATGAGTCTAAGGGTAAAGCAATTGCGGGAAGAAAGGAACCATCTGGCCTTGTGTCGCCAAAGAAGCGCTATTTAGGAAGTTGTCTTGTCTGTATTAAATATCTGTTGGCTGTTTCAACTTGCGATGTCTTCTCCTGCGGTTTTGGTAGTGAATAATCATTTTCTTAATAGCACAACCATTGATGCTGTTGAGCATCCATCAGCGTAAACAGTTGGGTGTGATTTATCCTAGATGACAACTGATAACCTGTGTGCCATTGCGAAAAAGTAGTCATATATTGCAGATGGGAACGTGTTGACAAATGATATATTTCATGAGTCATATTCAGATTAAGGGTGTTGTATTTGTACTTATTTTCTAAGCTAATGTGGAGGTGCAGTTGTGAAAAGTTTCACTAATAAATCCAATTAAGTTTATGTATATATGTTATTCCAGTGTTTTTATCCCTTACAATTGCAATAAGAACCTTAATCTTGATAACATGCATGCTTTTTTTTTTCTCATAAATTTATTCTAATGCAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGGTGAGTGTCCTTTTGCAACAGCCATGTCTTCTGTAAGGGTACTTGTATTGAAAATTTTATTGAAATTTATAATATAGTCCCTATTATTACCCTGATATTAATATCATTTCTTCTTTAAAGGATGGTTGTTTTCAATAAAATTTACTTCTAGATTTTTTTCAAGACTAAGTTTTAGTTTAGGTATAGCTAAGTTTTCTTAAGATGTAAGTGCATCTTTTAAGATGTATAGCTAAGTATTGGATGCTAAATAGCTAATAGAAAATATGTGCTTTTGTAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTATGGATATCAAAATGTTTTTCTTCCGGTCTTCTGGTCTGCTTTGGTTTTCTGTGCCTGTGGCTTTATATTTTCTGTACGTAGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGGTTTGTAATTCTTTCTCTTGAATGTGTTAGTCGGTGTATCCCAACAAAGAATGTGATGTTTCTATTTGTTGGACCATGCAGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGTATTGGTGTTGTACATAACTTCTATTTATAGATTTTTCTCTAATGACCTAATTATTACCTACATTCAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGGTTAGTAATAAATGTTCTCTTCTTGTTATGTCATCGTACCATGGGCCCTGGGATGAGAATCAATTGCTTATGTGTTGATCTTAGTTTTAATTCATTGTCCTCTGAAATCAAGATTCATGCTTTAATATTTTTTCTGAGAATACAAAAGCTGTGTATTATTTCATTAAGACAGAGACTGGATGACGTCTGTCAGCTGGTCGTCAGGCCCGTCAAACCCCCTCAGGTCAGGGAAAAATAATTATAAAAGAAGTCCTAAAATGCTAAAACTGAAAATGAAAGAAACGACAATGTCCTATACTCAGAAGCAACCTCTGAGCCTGCAGAGGCCTTTCTATATAGTTTGCGGGCTATGTCAGTAATATTTGTCTTTCTGTTTGTGTTGCAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGGTATGTTTGATATCTTCTGTATAAAGTGCATTCTGAAAATATTATACTTTTTGGTAATTGATGAGGGAACATTTTCAGATGTGTTATTCCTGTTATACACTTTGGTCATATACGTTGACATTTATGGCAAGATTTGGTCAAATTTTTGAAATGTTGACTATCAATTTTATATTAGAATAAGTTTATAAAATCTAATAAATTTATGACATTATGATAGTACTTTTCAAGGTAAATCTAGCCTACCATCTTTTTTTTTTCAACAAAGCATTTGAAAAATTATTAATGATTGAAGTTTCATAAGTTTGACTTAAAAATCAAATATTTATGATTAGAGGGAGTATTTGGTATGTATCTCTTATGATCTTTTGATGATCTTGCAGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTATGGATTTATTTGTTTTTTGACCATGAGGGTTTTTCCTGTTTTTGCTATGATAATAGATAATATGTCTTCTAGATGCATTTGATTGTGATCTTTCGTCAACGTGTTCTTATTTCTATGATAGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAGTATGTTAGATTTTTATTCTGTTTTACACTCAAGCCTCCCTATGGCAGCACTAATTGTTGACTGCATTGTTCCACAGATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGGTATATCCTTTTATAACATCAGCTTTTTACTGGCATGCCATTTTTGTCGTTAAAGAGAAACAGGAGTATGTGTTGGAATTTGGGTTTTTATATACTTTGGAACTTCCACTGTGGTTCATAAAACATATGATTGAAAAGCTTGTAATGTATTTCCTTTTTTTTGACCGACTAATGTATGTCTCCTTTTAAATTGATATGACTTAAATTTCCTCTATGGCCCAATGACTAAAACACAGTGCTGGTGGCTAACTTGCAATGTTCAAGGTTTGCTTTTGTTTTTCCTAGATCTGGCCATGCGGCAATCTGGGGACTGCTTTCATAGATTTTGGATATGTTGAGAATCGAAAGGATGGTTTGGAACTTTGGATAGTAGAGCTGGATTGTGATGCATGTATGGCAAATGGGCAACAACCAGTCCTAGGAGCGAGCTAGGCCTGACAGTAAGGATATGTGGAGTGGATTTGTGTTATTATTGAGAATTTGTTGACCGTAGGCACTTCAATTTCATATACTGCATGACATGGACCTAACTTACATGAGATCTCAAAGTTTTCTTTTAATTATTCTTGCATCCTGATAAAACAAGATTATGGTACTTGGTAAGCATTTTTCTGGAATATGTACGTGTTTTTTTCACAACAAAAGAAATTGATCCTGCTTAGTTTTTATGCGGATTCTGTTGAAATAGAGATTTTGTTTTGTTCATTGGCACATATTAGCCATTTAGCATGAATACAAAAATGCTTACTTATCAGTGTGGTTCTTCTGTAATTTGTTTTGATATTTCTGTTAGTAGTTTTTGGATGAAATCACACTGAGTGATTGGTTTTGCCTGTGAAATTTTGCAGATCAATATCAAGATCACGGACTCCTGTTTCTTCAGTAAGTCTTGCAGCAAGTCATCTATTATTAAAAAGTGAATTAAGTCCTATTTTCAATCATTTTGTTTATTGCAATTTGCCTTTTTTTGGCAGCCTTCTCGTGGAAGATCTGTTAGTAAAAGCCCAAGCAGGAGCTTATCCCGCTCTCCCTCTCCGGTAAATACCAAATAATTCCTCCCACATTTACAATGCCCCTCCCGCCCTGAACAAAGGAAAAAAAAAATAGAGAGAACTCATTACACTGGTGAAACACTTTATGATCATTTGCTGCCTACGTTATTGCAGGTGAAGTCTGATTGAACATGAAAACCCTCCAGACTGTGACAGCTACTTAAGGATCCAGGAACCTGGAACTCGAGGATAGCATGGATTAGATCAAATCATCCTGGTTATGGCTTCACTGCGCTACAGGCTTCGCCCTTTGTTTAGTAGGTCGACTTCTGTTTAATATTATTCATATTGCATTATATTTGCGAAACAGAGATCATGTGTTCTGTAGTCATAGTCCCAGTACTTATTTTACATCTAGTAAGTGGAAGAACTATCTGCACATTGTTGTCGACTGTATTTTAAATATCTGATGCCATATATATGTTGATGTACCACCTTTGGTTGTCCTTTGAACCGTGGTTGATGTGCTGACGTACTAGATGTTCTGTGTTGCTGATTTATATTATGTAAACTTAGGGTGTGTTTAGTTCACGTCAAAATTGGAAGTTTGGTCGAAATCGGAACGATGTGACGGAAAAGTTG
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| CDS seq | ATGGGCACCACGCACGCATCTCAAAGCCACACACGCGTCTCCACAACACGTCCCTCCAGGTCCAACCCCACCACATGTATCGGTTTCTCGTGGGCGGCCAGATTTTTGTCGCAGGTCGGTTTCGTTTCCGCTCTCCGCTCCACGCGGCGTCGCCTCCGGAGCCCCCAGAAGCTTCTCGACCCACCACCACCGCTCTCCCTCTCCCCGTCAGGTGCGTTCGTCGGAAATCATCGGGAAAAACCCCGAAATCCTCTCCCAGCTTTCCCTTTTTTTTTTCCCTTCTTCTCCGCGCGCGTGTTCTCCTCGATCTCTCCGATCATCATCGCGTGTGGTGGCCGATTGGCTGCGGTTCCCTTCCCGGAAATTCTGCGGCGCGCGCCGCCATTTTTATCCGTCTGTCTACAGGAAACAATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGATCAATATCAAGATCACGGACTCCTGTTTCTTCACCTTCTCGTGGAAGATCTGTTAGTAAAAGCCCAAGCAGGAGCTTATCCCGCTCTCCCTCTCCGGTGAAGTCTGATTGA
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| Protein seq | MGTTHASQSHTRVSTTRPSRSNPTTCIGFSWAARFLSQVGFVSALRSTRRRLRSPQKLLDPPPPLSLSPSGAFVGNHREKPRNPLPAFPFFFPFFSARVFSSISPIIIACGGRLAAVPFPEILRRAPPFLSVCLQETMSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERSISRSRTPVSSPSRGRSVSKSPSRSLSRSPSPVKSD |
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| Function | Serine/arginine-rich-splicing factor SR34 [UniProtKB/Swiss-Prot:O22315] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0194800 | OsZS97_01T0194800.1 | Chr01 | 11994718 | 12000891 | + | makerRMon | ||
| CDS seq | ATGGGCACCACGCACGCATCTCAAAGCCACACACGCGTCTCCACAACACGTCCCTCCAGGTCCAACCCCACCACATGTATCGGTTTCTCGTGGGCGGCCAGATTTTTGTCGCAGGTCGGTTTCGTTTCCGCTCTCCGCTCCACGCGGCGTCGCCTCCGGAGCCCCCAGAAGCTTCTCGACCCACCACCACCGCTCTCCCTCTCCCCGTCAGAAACAATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGATCAATATCAAGATCACGGACTCCTGTTTCTTCACCTTCTCGTGGAAGATCTGTTAGTAAAAGCCCAAGCAGGAGCTTATCCCGCTCTCCCTCTCCGGTGAAGTCTGATTGA
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| Protein seq | MGTTHASQSHTRVSTTRPSRSNPTTCIGFSWAARFLSQVGFVSALRSTRRRLRSPQKLLDPPPPLSLSPSETMSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERSISRSRTPVSSPSRGRSVSKSPSRSLSRSPSPVKSD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0194800 | OsZS97_01T0194800.2 | Chr01 | 11994718 | 12000891 | + | makerRMon | ||
| CDS seq | ATGGGCACCACGCACGCATCTCAAAGCCACACACGCGTCTCCACAACACGTCCCTCCAGGTCCAACCCCACCACATGTATCGGTTTCTCGTGGGCGGCCAGATTTTTGTCGCAGGTCGGTTTCGTTTCCGCTCTCCGCTCCACGCGGCGTCGCCTCCGGAGCCCCCAGAAGCTTCTCGACCCACCACCACCGCTCTCCCTCTCCCCGTCAGGTGCGTTCGTCGGAAATCATCGGGAAAAACCCCGAAATCCTCTCCCAGCTTTCCCTTTTTTTTTTCCCTTCTTCTCCGCGCGCGTGTTCTCCTCGATCTCTCCGATCATCATCGCGTGTGGTGGCCGATTGGCTGCGGTTCCCTTCCCGGAAATTCTGCGGCGCGCGCCGCCATTTTTATCCGTCTGTCTACAGGAAACAATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGGTATATCCTTTTATAA
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| Protein seq | MGTTHASQSHTRVSTTRPSRSNPTTCIGFSWAARFLSQVGFVSALRSTRRRLRSPQKLLDPPPPLSLSPSGAFVGNHREKPRNPLPAFPFFFPFFSARVFSSISPIIIACGGRLAAVPFPEILRRAPPFLSVCLQETMSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERYILL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0194800 | OsZS97_01T0194800.3 | Chr01 | 11994718 | 12000891 | + | makerRMon | ||
| CDS seq | ATGGGCACCACGCACGCATCTCAAAGCCACACACGCGTCTCCACAACACGTCCCTCCAGGTCCAACCCCACCACATGTATCGGTTTCTCGTGGGCGGCCAGATTTTTGTCGCAGGTCGGTTTCGTTTCCGCTCTCCGCTCCACGCGGCGTCGCCTCCGGAGCCCCCAGAAGCTTCTCGACCCACCACCACCGCTCTCCCTCTCCCCGTCAGGTGCGTTCGTCGGAAATCATCGGGAAAAACCCCGAAATCCTCTCCCAGCTTTCCCTTTTTTTTTTCCCTTCTTCTCCGCGCGCGTGTTCTCCTCGATCTCTCCGATCATCATCGCGTGTGGTGGCCGATTGGCTGCGGTTCCCTTCCCGGAAATTCTGCGGCGCGCGCCGCCATTTTTATCCGTCTGTCTACAGGAAACAATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGGTTTGCTTTTGTTTTTCCTAGATCTGGCCATGCGGCAATCTGGGGACTGCTTTCATAG
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| Protein seq | MGTTHASQSHTRVSTTRPSRSNPTTCIGFSWAARFLSQVGFVSALRSTRRRLRSPQKLLDPPPPLSLSPSGAFVGNHREKPRNPLPAFPFFFPFFSARVFSSISPIIIACGGRLAAVPFPEILRRAPPFLSVCLQETMSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERFAFVFPRSGHAAIWGLLS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0194800 | OsZS97_01T0194800.4 | Chr01 | 11994718 | 12000891 | + | makerRMon | ||
| CDS seq | ATGGGCACCACGCACGCATCTCAAAGCCACACACGCGTCTCCACAACACGTCCCTCCAGGTCCAACCCCACCACATGTATCGGTTTCTCGTGGGCGGCCAGATTTTTGTCGCAGGTCGGTTTCGTTTCCGCTCTCCGCTCCACGCGGCGTCGCCTCCGGAGCCCCCAGAAGCTTCTCGACCCACCACCACCGCTCTCCCTCTCCCCGTCAGGTGCGTTCGTCGGAAATCATCGGGAAAAACCCCGAAATCCTCTCCCAGCTTTCCCTTTTTTTTTTCCCTTCTTCTCCGCGCGCGTGTTCTCCTCGATCTCTCCGATCATCATCGCGTGTGGTGGCCGATTGGCTGCGGTTCCCTTCCCGGAAATTCTGCGGCGCGCGCCGCCATTTTTATCCGTCTGTCTACAGGAAACAATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGATCTGGCCATGCGGCAATCTGGGGACTGCTTTCATAG
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| Protein seq | MGTTHASQSHTRVSTTRPSRSNPTTCIGFSWAARFLSQVGFVSALRSTRRRLRSPQKLLDPPPPLSLSPSGAFVGNHREKPRNPLPAFPFFFPFFSARVFSSISPIIIACGGRLAAVPFPEILRRAPPFLSVCLQETMSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERSGHAAIWGLLS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0194800 | OsZS97_01T0194800.5 | Chr01 | 11994718 | 12000891 | + | makerRMon | ||
| CDS seq | ATGGGCACCACGCACGCATCTCAAAGCCACACACGCGTCTCCACAACACGTCCCTCCAGGTCCAACCCCACCACATGTATCGGTTTCTCGTGGGCGGCCAGATTTTTGTCGCAGGTCGGTTTCGTTTCCGCTCTCCGCTCCACGCGGCGTCGCCTCCGGAGCCCCCAGAAGCTTCTCGACCCACCACCACCGCTCTCCCTCTCCCCGTCAGGTGCGTTCGTCGGAAATCATCGGGAAAAACCCCGAAATCCTCTCCCAGCTTTCCCTTTTTTTTTTCCCTTCTTCTCCGCGCGCGTGTTCTCCTCGATCTCTCCGATCATCATCGCGTGTGGTGGCCGATTGGCTGCGGTTCCCTTCCCGGAAATTCTGCGGCGCGCGCCGCCATTTTTATCCGTCTGTCTACAGGAAACAATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGATCAATATCAAGATCACGGACTCCTGTTTCTTCACCTTCTCGTGGAAGATCTGTTAGTAAAAGCCCAAGCAGGAGCTTATCCCGCTCTCCCTCTCCGGTGAAGTCTGATTGA
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| Protein seq | MGTTHASQSHTRVSTTRPSRSNPTTCIGFSWAARFLSQVGFVSALRSTRRRLRSPQKLLDPPPPLSLSPSGAFVGNHREKPRNPLPAFPFFFPFFSARVFSSISPIIIACGGRLAAVPFPEILRRAPPFLSVCLQETMSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERSISRSRTPVSSPSRGRSVSKSPSRSLSRSPSPVKSD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0194800 | OsZS97_01T0194800.6 | Chr01 | 11994718 | 12000891 | + | makerRMon | ||
| CDS seq | ATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGATCAATATCAAGATCACGGACTCCTGTTTCTTCACCTTCTCGTGGAAGATCTGTTAGTAAAAGCCCAAGCAGGAGCTTATCCCGCTCTCCCTCTCCGGTGAAGTCTGATTGA
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| Protein seq | MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERSISRSRTPVSSPSRGRSVSKSPSRSLSRSPSPVKSD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0194800 | OsZS97_01T0194800.7 | Chr01 | 11994718 | 12000891 | + | makerRMon | ||
| CDS seq | ATGAGCAGACGCAACAGCCGCACCATCTATGTAGGCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTACGGTCGCATTTTGGACATTGACTTGAAGATTCCTCCAAGACCTCCTGGTTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGATGATGCAATTTGCGGCCGTGATAGGTATAACTTTGATGGCTACAGGTTGCGGGTGGAATTAGCTCATGGTGGAAGAGGTCAATCTTACTCATACGATCGCCCAAGAAGCTATAGCAGTGGACGACGTGGAGGTGTTTCTAGGCGTTCTGAATATCGCGTTATGGTCACTGGCTTACCTTCATCGGCATCATGGCAGGATCTTAAGGACCATATGCGGCGGGCTGGTGATGTCTGCTTCTCTGATGTATACCGTGAGGCTGGAGCAACCGTTGGAATTGTGGATTATACAACCTATGAAGACATGAAGTATGCGATTAGGAAGCTTGATGACTCAGAGTTCAGAAATGCATTTTCACGGGCATATATCAGGGTGAGGGAGTATGATGATAGATCAAGAAGCAGAAGCCGCTCTTACTCAAGAAGTCGTAGTTACAGCAGGAGCAGGAGTCCAAAATCTGTTTCTCGGTCACCGTCACCTGTGGATGAAAGATCAATATCAAGATCACGGACTCCTGTTTCTTCACCTTCTCGTGGAAGATCTGTTAGTAAAAGCCCAAGCAGGAGCTTATCCCGCTCTCCCTCTCCGGTGAAGTCTGATTGA
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| Protein seq | MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSRSPKSVSRSPSPVDERSISRSRTPVSSPSRGRSVSKSPSRSLSRSPSPVKSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 21.633878 | 11.7462355 | 3.7381715 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0316600 | RBH | 1.293697 | 1.714197 | 3.366528 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g21420 | RBH | 0.314657 | 1.260114 | 0.680727 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0316600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014560 | RBH | 1.136344 | 0.000000 | 13.096912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014320 | RBH | 1.094379 | 2.496278 | 4.512453 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0014580 | RBH | 0.916871 | 0.967645 | 12.185623 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014050 | RBH | 0.259327 | 0.038662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014140 | RBH | 42.826111 | 15.689907 | 28.673792 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0197600 | RBH | 3.0596335 | 2.427671 | 37.631216 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014030 | RBH | 0.161964 | 0.152471 | 4.134034 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0475500 | SBH | 20.2566175 | 28.487003 | 39.894054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014080 | RBH | 1.506174 | 0.386952 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014100 | RBH | 2.682974 | 12.351934 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014100 | RBH | 26.789051 | 11.581521 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014190 | RBH | 1.119975 | 0.000000 | 1.731944 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013900 | RBH | 0.347567 | 0.199556 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014230 | RBH | 0.118479 | 0.0 | 2.655129 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014000 | RBH | 0.636150 | 0.000000 | 10.335774 |
