Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsZS97_01G0075500		OGI:01015420 \| 16/16			Zhenshan 97 \| ZS97RS3 \| HZAU			Chr01:4239625-4243236		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		TTGCAAACACAGTAACAATCAATATTATCATTGATTATTTTAGATGAATATGGCTATTGTTAGTAGCAATTAGCAGAGGTTTACATGACAAAGGTGGTGCTTTTCGCTAAATATTTAAGGAAAAATACTACACGAGAGGCTTCAGATCAGCAAGCCCCCTCAAAAAAAAAAAGATCTCCTAATGAACTGGGAAACACATACGACGTTTCACCCTAGTTCCTGATCTTTACAAGATGTGCAATTTCAGTTCTTCCATATAAAAGCTACGCTTCAGAAAACAGAGAATTTCTGGAATGCATCCAAGCTGTTTGCAAGTAAATCGCTCACACTTAAACTGTCGGTGCCACTCAAAAGTCTTGAACAAGATGCTCCGACTTCTGGCTCCCCAGTCGATTCAGACTGAAAACAAGATGCTCCCAGTCTTGGCTCCCCAGTAGATTCAGACTGAAACCAAGTAGATGACGATACATAAGAATCAGATCAGCTCTTTAAGAATCAAATAGAACATATCAATGTTTATTAGAGGCTCTGGTGAGTACCACTGGGATGTCTGGCTTCACATTATTGTCATCATTGGCCAAGAGTGATGCCTGAGGGTTCGGTTCCTCTCTTCTATCTTCAGTAGAACATTGCTGCAGAGACAAGCCGATAAGCAAATGCATAGTGTCCTTGGCAAGAAAAAAGTATTAGAAGAGCAAGTGAATGGTGGCTAATAGAGGTACCTTCTCACCGTCTGTACCAGATTCCAGAATTGTGCCTAGGACAGACAAGGTACTAGCACCACAACTGCTAGGAGTTGTACCAGGCGTCCTGCGTGAAATTCGATTCTGGGAAGGAAATGCATGGCACGTTTCTTCTGCATCCCAAAGGGATGGAGTTGACACCTTCGGCTGGCTACTTGCTTGTTGCCGAGCAATCAGGGAAGCAATAGCAGCATCAAATGAATCAGCGGTAAGAGGTATCTGTTGGAAACTTGAGTTGTTTTGTGGAAGTAACTGCTTGCTGTCTTGAGAAGGCGCAGCTTCAGCTAATAGTGCTCCAAAACTTATATTAGATATGCAGTCAATCCATGAAAGTGGTGTCTCTTTGCTTTGATTATCCTGTTTCTGAAAACATGTAATCAGTGTTAGGTCAAGTCAAAATATAATTGATGATATTGAAAGAAAACTATAACGTTTGAACTTACCATAGTCTTTACTGTGTTGGCCTCAGTGGACGGTGCAGCAAAGTTACTCGGGAATTCACTCAAAGCAGTCATCTGTTTCTGTTCCCTGACAACAGGATCTAAAGGCTCGTTGTCGATTATATTGCCTGCAGAGTGCACTAATCCTAAAGATACTCCACTGTTTTGTTCCCCAAAATTGGGTGGAAACCAACCATATCTAAGAAAAAAGATGTGATATTCAGCCATAAGTTTTGTGCTCAATATATGCATGGATGCAAACAAAAGTAAAGTAAACCAGGTCTGGAGAAGAAAGCGAACCTTAAGCGAAATGTCGAAGGGCTGCCAACAGCAACATGCACATCAGCTGCTGTGCAAGAATCACTACGAGTCCATCTCTCACTGCCATTTATGTTATCAAGCCTAGTACCGTCAGGGAAGAGCATGAGTTCACCTCTTGCACACTGAGAATTGCCCCATTTTGTGTTGAGATGCTGCAGAACTGAGGATATTTTCTTTCGAGGAGCCACAGTCAATTCCAGGTAAGGATTGTGGTTTTTCTGTTAATTATACAGAGCAAGCCACACATTATGGAATCTGAACGAGGTCGTATACAATAATCACACATAGAAATCTTGCAAAAGCTGAAGTAATCACCTGCTGCAGGGACTTCTGAAACTCCTCATCTATTGGGAACAGTTGAAGTGCGATCTTTCCAGAATGGCGGGGTGGTCGAGCAGACACATTCTTAGAATCATGGAACAGTGCTTCCATAAAGCTACCATCCTTTGGTGCACTTTGTTTTTCAGTATACAATTGAGGCGATGAGGCACCAGCTCTTCTGTATTTTGTGCTAGCATTGCCTGAAAAGTAAAGCACATGTTGAGTTTGAGACCAGTTTTACTCGTAGATGTACTTTACACAATGGCATATGTACTTTACTCCATAAATAACTTTTATTTCTCTTAATGGAAAAAATGCGCTCCTTGCGTATTCCCGAAAAAAACAATGGCATATGGATGGGCACCTAACGACATCATGAAACTGTCTTGATTCAATTGTAGCAACAGACATTTATTTTCTACTTCAAATTTTAATTTTGTTTGATAAGTGCAGCAGGTACACCATACAATAAAGGAAATTGGGAACAAGATTCCAACACATTACCTGATGATTTGTTGATATATTTTCCAGGTTTCAGGCTTTGCATCGTACTGCAACCAAGTTTTGCCGCCATTCCTGTATCAGTTGGTTTACAGCGCTGCTGAAGAGGTTTCATGGTTTTCTGATATTCAGCAGCAAAACTATCTGGTGTGCAATTTTGTAATCCTACTCCTGCAAAATTGTAAAACCAACATTAGTTTGCCCCACACCTCCATAGTTCCATTAATTGTCTGCAAAGAGCACGGTTATAGCAACACCTCAGGAGGACAGGACCTTTTTAGCAGTCTGCCCAAAATCACAAGACAGACAACTTTTTTGGTAATCGAAGAGCTAAATCTTTTTTTTTTAAACCAAGGGAAGAGTTAACACCTAGCTGCTACGGCTCTGAGATTATTCCTTAGTTTGCAGCGATAGTGCTAATCAGACAACTAGTACATAAAAATAAAAATCAAACAACAGAAATAAATCCTTTTATCCAATTATAAAAAAGTCAGATACATATCATATCATTCAAGCATTAGTATAATGGACCAGCACCAAAGTTCCTACACACAATGGGAAAGCCCACTGATCTATCTCTTATGATGAAAACGAGCTATGGATTTTAATGAAAGAATTATATCTATGAATTCTAGCATAAATTCTAGCAAACATTAGAAAGATTAAGTTCTGAAGTTTCTAGGGCATAATTGTTCTGATCCCTAATTGTGAATTATAACTATAACAAAATCACTCTTATGCACAGGAATTCAATGGGATGCACCGAATGTGCTAAAGGCAGACTTCCAGCGGAAGCATTCATTCGTTCACGTTCCTTTCAGAAACTGGCATTCGAGTTTTGAGTTTCTCGAGTCGCTCCCATAAACCTAATCCCCGAATTCTCCCGCAGCCCAACATTTCATTCAACCACGAAATCACGCCGCGCGTACCCACCAGTCACCTCGCTGTAGCAAGAATTCATCCATAAGAGGCGTACCTGATCTCACAACCCTAGATCTCCTGGACCCCGGAGAACCCGAGGCGGCGAAACCCTAGCCCACCCACCGCCGGCAAGACCCCCGACCTCCGCAACCGCGGAGAGAGAGAGAGAGCGAGCGAGGAGTCGGAGGCGAGCACGAACCCTCAAGGCCGCGAATCCCCACACCCGCCCGTCGCCGGAGTTCACCGGAAGGCTTCGCGGCGCCCGCGGCGGAGGCCGGCGAGCAGCGAATCGTCGGAGGCGGAAGAGACGGATTTTTTTTTTTTTTGGGAAATTTTTGAACTCTGGTTTGTTCACTTGCCGCCTC More
CDS seq		ATGAAACCTCTTCAGCAGCGCTGTAAACCAACTGATACAGGAATGGCGGCAAAACTTGGTTGCAGTACGATGCAAAGCCTGAAACCTGGAAAATATATCAACAAATCATCAGGCAATGCTAGCACAAAATACAGAAGAGCTGGTGCCTCATCGCCTCAATTGTATACTGAAAAACAAAGTGCACCAAAGGATGGTAGCTTTATGGAAGCACTGTTCCATGATTCTAAGAATGTGTCTGCTCGACCACCCCGCCATTCTGGAAAGATCGCACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGAAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATATCCTCAGTTCTGCAGCATCTCAACACAAAATGGGGCAATTCTCAGTGTGCAAGAGGTGAACTCATGCTCTTCCCTGACGGTACTAGGCTTGATAACATAAATGGCAGTGAGAGATGGACTCGTAGTGATTCTTGCACAGCAGCTGATGTGCATGTTGCTGTTGGCAGCCCTTCGACATTTCGCTTAAGATATGGTTGGTTTCCACCCAATTTTGGGGAACAAAACAGTGGAGTATCTTTAGGATTAGTGCACTCTGCAGGCAATATAATCGACAACGAGCCTTTAGATCCTGTTGTCAGGGAACAGAAACAGATGACTGCTTTGAGTGAATTCCCGAGTAACTTTGCTGCACCGTCCACTGAGGCCAACACAGTAAAGACTATGAAACAGGATAATCAAAGCAAAGAGACACCACTTTCATGGATTGACTGCATATCTAATATAAGTTTTGGAGCACTATTAGCTGAAGCTGCGCCTTCTCAAGACAGCAAGCAGTTACTTCCACAAAACAACTCAAGTTTCCAACAGATACCTCTTACCGCTGATTCATTTGATGCTGCTATTGCTTCCCTGATTGCTCGGCAACAAGCAAGTAGCCAGCCGAAGGTGTCAACTCCATCCCTTTGGGATGCAGAAGAAACGTGCCATGCATTTCCTTCCCAGAATCGAATTTCACGCAGGACGCCTGGTACAACTCCTAGCAGTTGTGGTGCTAGTACCTTGTCTGTCCTAGGCACAATTCTGGAATCTGGTACAGACGGTGAGAAGCAATGTTCTACTGAAGATAGAAGAGAGGAACCGAACCCTCAGGCATCACTCTTGGCCAATGATGACAATAATGTGAAGCCAGACATCCCAGTGTCTGAATCTACTGGGGAGCCAAGACTGGGAGCATCTTGTTTTCAGTCTGAATCGACTGGGGAGCCAGAAGTCGGAGCATCTTGTTCAAGACTTTTGAGTGGCACCGACAGTTTAAGTGTGAGCGATTTACTTGCAAACAGCTTGGATGCATTCCAGAAATTCTCTGTTTTCTGA More
Protein seq		MKPLQQRCKPTDTGMAAKLGCSTMQSLKPGKYINKSSGNASTKYRRAGASSPQLYTEKQSAPKDGSFMEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF
Function		TSL-kinase interacting protein 1 [UniProtKB/Swiss-Prot:Q8LJT8]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_01G0075500	OsZS97_01T0075500.1	Chr01	4239630	4243236	-	makerRMon
CDS seq	ATGAAACCTCTTCAGCAGCGCTGTAAACCAACTGATACAGGAATGGCGGCAAAACTTGGTTGCAGTACGATGCAAAGCCTGAAACCTGGAAAATATATCAACAAATCATCAGGCAATGCTAGCACAAAATACAGAAGAGCTGGTGCCTCATCGCCTCAATTGTATACTGAAAAACAAAGTGCACCAAAGGATGGTAGCTTTATGGAAGCACTGTTCCATGATTCTAAGAATGTGTCTGCTCGACCACCCCGCCATTCTGGAAAGATCGCACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGAAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATATCCTCAGTTCTGCAGCATCTCAACACAAAATGGGGCAATTCTCAGTGTGCAAGAGGTGAACTCATGCTCTTCCCTGACGGTACTAGGCTTGATAACATAAATGGCAGTGAGAGATGGACTCGTAGTGATTCTTGCACAGCAGCTGATGTGCATGTTGCTGTTGGCAGCCCTTCGACATTTCGCTTAAGATATGGTTGGTTTCCACCCAATTTTGGGGAACAAAACAGTGGAGTATCTTTAGGATTAGTGCACTCTGCAGGCAATATAATCGACAACGAGCCTTTAGATCCTGTTGTCAGGGAACAGAAACAGATGACTGCTTTGAGTGAATTCCCGAGTAACTTTGCTGCACCGTCCACTGAGGCCAACACAGTAAAGACTATGAAACAGGATAATCAAAGCAAAGAGACACCACTTTCATGGATTGACTGCATATCTAATATAAGTTTTGGAGCACTATTAGCTGAAGCTGCGCCTTCTCAAGACAGCAAGCAGTTACTTCCACAAAACAACTCAAGTTTCCAACAGATACCTCTTACCGCTGATTCATTTGATGCTGCTATTGCTTCCCTGATTGCTCGGCAACAAGCAAGTAGCCAGCCGAAGGTGTCAACTCCATCCCTTTGGGATGCAGAAGAAACGTGCCATGCATTTCCTTCCCAGAATCGAATTTCACGCAGGACGCCTGGTACAACTCCTAGCAGTTGTGGTGCTAGTACCTTGTCTGTCCTAGGCACAATTCTGGAATCTGGTACAGACGGTGAGAAGCAATGTTCTACTGAAGATAGAAGAGAGGAACCGAACCCTCAGGCATCACTCTTGGCCAATGATGACAATAATGTGAAGCCAGACATCCCAGTGTCTGAATCTACTGGGGAGCCAAGACTGGGAGCATCTTGTTTTCAGTCTGAATCGACTGGGGAGCCAGAAGTCGGAGCATCTTGTTCAAGACTTTTGAGTGGCACCGACAGTTTAAGTGTGAGCGATTTACTTGCAAACAGCTTGGATGCATTCCAGAAATTCTCTGTTTTCTGA More
Protein seq	MKPLQQRCKPTDTGMAAKLGCSTMQSLKPGKYINKSSGNASTKYRRAGASSPQLYTEKQSAPKDGSFMEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_01G0075500	OsZS97_01T0075500.2	Chr01	4239625	4243236	-	makerRMon
CDS seq	ATGCTCTTCCCTGACGGTACTAGGCTTGATAACATAAATGGCAGTGAGAGATGGACTCGTAGTGATTCTTGCACAGCAGCTGATGTGCATGTTGCTGTTGGCAGCCCTTCGACATTTCGCTTAAGATATGGTTGGTTTCCACCCAATTTTGGGGAACAAAACAGTGGAGTATCTTTAGGATTAGTGCACTCTGCAGGCAATATAATCGACAACGAGCCTTTAGATCCTGTTGTCAGGGAACAGAAACAGATGACTGCTTTGAGTGAATTCCCGAGTAACTTTGCTGCACCGTCCACTGAGGCCAACACAGTAAAGACTATGAAACAGGATAATCAAAGCAAAGAGACACCACTTTCATGGATTGACTGCATATCTAATATAAGTTTTGGAGCACTATTAGCTGAAGCTGCGCCTTCTCAAGACAGCAAGCAGTTACTTCCACAAAACAACTCAAGTTTCCAACAGATACCTCTTACCGCTGATTCATTTGATGCTGCTATTGCTTCCCTGATTGCTCGGCAACAAGCAAGTAGCCAGCCGAAGGTGTCAACTCCATCCCTTTGGGATGCAGAAGAAACGTGCCATGCATTTCCTTCCCAGAATCGAATTTCACGCAGGACGCCTGGTACAACTCCTAGCAGTTGTGGTGCTAGTACCTTGTCTGTCCTAGGCACAATTCTGGAATCTGGTACAGACGGTGAGAAGCAATGTTCTACTGAAGATAGAAGAGAGGAACCGAACCCTCAGGCATCACTCTTGGCCAATGATGACAATAATGTGAAGCCAGACATCCCAGTGTCTGAATCTACTGGGGAGCCAAGACTGGGAGCATCTTGTTTTCAGTCTGAATCGACTGGGGAGCCAGAAGTCGGAGCATCTTGTTCAAGACTTTTGAGTGGCACCGACAGTTTAAGTGTGAGCGATTTACTTGCAAACAGCTTGGATGCATTCCAGAAATTCTCTGTTTTCTGA More
Protein seq	MLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_01G0075500	OsZS97_01T0075500.3	Chr01	4239630	4243236	-	makerRMon
CDS seq	ATGGAAGCACTGTTCCATGATTCTAAGAATGTGTCTGCTCGACCACCCCGCCATTCTGGAAAGATCGCACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGAAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATATCCTCAGTTCTGCAGCATCTCAACACAAAATGGGGCAATTCTCAGTGTGCAAGAGGTGAACTCATGCTCTTCCCTGACGGTACTAGGCTTGATAACATAAATGGCAGTGAGAGATGGACTCGTAGTGATTCTTGCACAGCAGCTGATGTGCATGTTGCTGTTGGCAGCCCTTCGACATTTCGCTTAAGATATGGTTGGTTTCCACCCAATTTTGGGGAACAAAACAGTGGAGTATCTTTAGGATTAGTGCACTCTGCAGGCAATATAATCGACAACGAGCCTTTAGATCCTGTTGTCAGGGAACAGAAACAGATGACTGCTTTGAGTGAATTCCCGAGTAACTTTGCTGCACCGTCCACTGAGGCCAACACAGTAAAGACTATGAAACAGGATAATCAAAGCAAAGAGACACCACTTTCATGGATTGACTGCATATCTAATATAAGTTTTGGAGCACTATTAGCTGAAGCTGCGCCTTCTCAAGACAGCAAGCAGTTACTTCCACAAAACAACTCAAGTTTCCAACAGATACCTCTTACCGCTGATTCATTTGATGCTGCTATTGCTTCCCTGATTGCTCGGCAACAAGCAAGTAGCCAGCCGAAGGTGTCAACTCCATCCCTTTGGGATGCAGAAGAAACGTGCCATGCATTTCCTTCCCAGAATCGAATTTCACGCAGGACGCCTGGTACAACTCCTAGCAGTTGTGGTGCTAGTACCTTGTCTGTCCTAGGCACAATTCTGGAATCTGGTACAGACGGTGAGAAGCAATGTTCTACTGAAGATAGAAGAGAGGAACCGAACCCTCAGGCATCACTCTTGGCCAATGATGACAATAATGTGAAGCCAGACATCCCAGTGTCTGAATCTACTGGGGAGCCAAGACTGGGAGCATCTTGTTTTCAGTCTGAATCGACTGGGGAGCCAGAAGTCGGAGCATCTTGTTCAAGACTTTTGAGTGGCACCGACAGTTTAAGTGTGAGCGATTTACTTGCAAACAGCTTGGATGCATTCCAGAAATTCTCTGTTTTCTGA More
Protein seq	MEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_01G0075500	OsZS97_01T0075500.4	Chr01	4239630	4243236	-	makerRMon
CDS seq	ATGAAACCTCTTCAGCAGCGCTGTAAACCAACTGATACAGGAATGGCGGCAAAACTTGGTTGCAGTACGATGCAAAGCCTGAAACCTGGAAAATATATCAACAAATCATCAGGCAATGCTAGCACAAAATACAGAAGAGCTGGTGCCTCATCGCCTCAATTGTATACTGAAAAACAAAGTGCACCAAAGGATGGTAGCTTTATGGAAGCACTGTTCCATGATTCTAAGAATGTGTCTGCTCGACCACCCCGCCATTCTGGAAAGATCGCACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGAAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATATCCTCAGTTCTGCAGCATCTCAACACAAAATGGGGCAATTCTCAGTGTGCAAGAGGTGAACTCATGCTCTTCCCTGACGGTACTAGGCTTGATAACATAAATGGCAGTGAGAGATGGACTCGTAGTGATTCTTGCACAGCAGCTGATGTGCATGTTGCTGTTGGCAGCCCTTCGACATTTCGCTTAAGATATGGTTGGTTTCCACCCAATTTTGGGGAACAAAACAGTGGAGTATCTTTAGGATTAGTGCACTCTGCAGGCAATATAATCGACAACGAGCCTTTAGATCCTGTTGTCAGGGAACAGAAACAGATGACTGCTTTGAGTGAATTCCCGAGTAACTTTGCTGCACCGTCCACTGAGGCCAACACAGTAAAGACTATGAAACAGGATAATCAAAGCAAAGAGACACCACTTTCATGGATTGACTGCATATCTAATATAAGTTTTGGAGCACTATTAGCTGAAGCTGCGCCTTCTCAAGACAGCAAGCAGTTACTTCCACAAAACAACTCAAGTTTCCAACAGATACCTCTTACCGCTGATTCATTTGATGCTGCTATTGCTTCCCTGATTGCTCGGCAACAAGCAAGTAGCCAGCCGAAGGTGTCAACTCCATCCCTTTGGGATGCAGAAGAAACGTGCCATGCATTTCCTTCCCAGAATCGAATTTCACGCAGGACGCCTGGTACAACTCCTAGCAGTTGTGGTGCTAGTACCTTGTCTGTCCTAGGCACAATTCTGGAATCTGGTACAGACGGTGAGAAGCAATGTTCTACTGAAGATAGAAGAGAGGAACCGAACCCTCAGGCATCACTCTTGGCCAATGATGACAATAATGTGAAGCCAGACATCCCAGTGTCTGAATCTACTGGGGAGCCAAGACTGGGAGCATCTTGTTTTCAGTCTGAATCGACTGGGGAGCCAGAAGTCGGAGCATCTTGTTCAAGACTTTTGAGTGGCACCGACAGTTTAAGTGTGAGCGATTTACTTGCAAACAGCTTGGATGCATTCCAGAAATTCTCTGTTTTCTGA More
Protein seq	MKPLQQRCKPTDTGMAAKLGCSTMQSLKPGKYINKSSGNASTKYRRAGASSPQLYTEKQSAPKDGSFMEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_01G0075500	OsZS97_01T0075500.5	Chr01	4239628	4243236	-	makerRMon
CDS seq	ATGAAACCTCTTCAGCAGCGCTGTAAACCAACTGATACAGGAATGGCGGCAAAACTTGGTTGCAGTACGATGCAAAGCCTGAAACCTGGAAAATATATCAACAAATCATCAGGCAATGCTAGCACAAAATACAGAAGAGCTGGTGCCTCATCGCCTCAATTGTATACTGAAAAACAAAGTGCACCAAAGGATGGTAGCTTTATGGAAGCACTGTTCCATGATTCTAAGAATGTGTCTGCTCGACCACCCCGCCATTCTGGAAAGATCGCACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGAAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATATCCTCAGTTCTGCAGCATCTCAACACAAAATGGGGCAATTCTCAGTGTGCAAGAGGTGAACTCATGCTCTTCCCTGACGGTACTAGGCTTGATAACATAAATGGCAGTGAGAGATGGACTCGTAGTGATTCTTGCACAGCAGCTGATGTGCATGTTGCTGTTGGCAGCCCTTCGACATTTCGCTTAAGATATGGTTGGTTTCCACCCAATTTTGGGGAACAAAACAGTGGAGTATCTTTAGGATTAGTGCACTCTGCAGGCAATATAATCGACAACGAGCCTTTAGATCCTGTTGTCAGGGAACAGAAACAGATGACTGCTTTGAGTGAATTCCCGAGTAACTTTGCTGCACCGTCCACTGAGGCCAACACAGTAAAGACTATGAAACAGGATAATCAAAGCAAAGAGACACCACTTTCATGGATTGACTGCATATCTAATATAAGTTTTGGAGCACTATTAGCTGAAGCTGCGCCTTCTCAAGACAGCAAGCAGTTACTTCCACAAAACAACTCAAGTTTCCAACAGATACCTCTTACCGCTGATTCATTTGATGCTGCTATTGCTTCCCTGATTGCTCGGCAACAAGCAAGTAGCCAGCCGAAGGTGTCAACTCCATCCCTTTGGGATGCAGAAGAAACGTGCCATGCATTTCCTTCCCAGAATCGAATTTCACGCAGGACGCCTGGTACAACTCCTAGCAGTTGTGGTGCTAGTACCTTGTCTGTCCTAGGCACAATTCTGGAATCTGGTACAGACGGTGAGAAGGTACCTCTATTAGCCACCATTCACTTGCTCTTCTAA More
Protein seq	MKPLQQRCKPTDTGMAAKLGCSTMQSLKPGKYINKSSGNASTKYRRAGASSPQLYTEKQSAPKDGSFMEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKVPLLATIHLLF More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	2.906838	0.6347845	4.331717

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0182400	RBH	0.300079	0.920215	3.985768
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g08680	RBH	0.202035	0.616194	1.021494
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0182400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0006120	RBH	0.278965	1.284453	0.619831
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0005790	RBH	0.0	1.336260	0.277681
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0006100	RBH	0.617516	1.089668	2.081059
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0005680	RBH	0.104590	0.057802	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0005870	RBH	0.980577	1.857731	0.635257
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0075200	RBH	1.356286	0.9454075	1.9550055
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0005820	RBH	0.0	0.083091	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0005620	RBH	0.091035	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0005830	RBH	0.059281	1.570190	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0005890	RBH	0.0	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0005830	RBH	0.000000	0.000000	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0005790	RBH	0.0	2.750158	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G005840	RBH	0.075005	0.868582	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0005720	RBH	0.000000	0.000000	1.648482

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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