Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0005620 | OGI:01015420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:4241254-4244859 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacacagtaacaatcaatattatcattgattattttagatgaatatggctattgttagtagcaattagcagaggtttacatgacaaaggtggtgcttttcgctaaatatttaaggaaaaatactacacgagaggcttcagatcagcaagccccctcAaaaaaaaaaagatctcctaatgaactgggaaacacatacgacgtttcaccctagttcctgatctttacaagatgtgcaatttcagttcttccatataaaagctacgcttcagaaaacagagaatttctggaatgcatccaagctgtttgcaagtaaatcgctcacacttaaactgtcggtgccactcaaaagtcttgaacaagatgctccgacttctggctccccagtcgattcagactgaaaacaagatgctcccagtcttggctccccagtagattcagactgaaaccaagtagatgacgatacataagaatcagatcagctctttaagaatcaaatagaacatatcaatgtttattagaggctctggtgagtaccactgggatgtctggcttcacattattgtcatcattggccaagagtgatgcctgagggttcggttcctctcttctatcttcagtagaacattgctgcagagacaagccgataagcaaatgcatagtgtccttggcaagaaaaaagtattagaagagcaagtgaatggtggctaatagaggtaccttctcaccgtctgtaccagattccagaattgtgcctaggacagacaaggtactagcaccacaactgctaggagttgtaccaggcgtcctgcgtgaaattcgattctgggaaggaaatgcatggcacgtttcttctgcatcccaaagggatggagttgacaccttcggctggctacttgcttgttgccgagcaatcagggaagcaatagcagcatcaaatgaatcagcggtaagaggtatctgttggaaacttgagttgttttgtggaagtaactgcttgctgtcttgagaaggcgcagcttcagctaatagtgctccaaaacttatattagatatgcagtcaatccatgaaagtggtgtctctttgctttgattatcctgtttctgaaaacatgtaatcagtgttaggtcaagtcaaaatataattgatgatattgAaagaaaactataacgtttgaacttaccatagtctttactgtgttggcctcagtggacggtgcagcaaagttactcgggaattcactcaaagcagtcatctgtttctgttccctgacaacaggatctaaaggctcgttgtcgattatattgcctgcagagtgcactaatcctaaagatactccactgttttgttccccaaaattgggtggaaaccaaccatatctaagaaaaaagatgtgatattcagccataagttttgtgctcaatatatgcatggatgcaaacaaaagtaaagtaaaccaggtctggagaagaaagcgaaccttaagcgaaatgtcgaagggctgccaacagcaacatgcacatcagctgctgtgcaagaatcactacgagtccatctctcactgccatttatgttatcaagcctagtaccgtcagggaagagcatgagttcacctcttgcacactgagaattgccccattttgtgttgagatgctgcagaactgaggatattttctttcgaggagccacagtcaattccaggtaaggattgtggtttttctgttaattatacagagcaagccacacattatggaatctgaacgaggtcgtatacaataatcacacatagaaatcttgcaaaagctgaagtaatcacctgctgcagggacttctgaaactcctcatctattgggaacagttgaagtgcgatctttccagaatggcggggtggtcgagcagacacattcttagaatcatggaacagtgcttccataaagctaccatcctttggtgcactttgtttttcagtatacaattgaggcgatgaggcaccagctcttctgtattttgtgctagcattgcctgaaaagtaaagcacatgttgagtttgagaccagttttactcgtagatgtactttacacaatggcatatgtactttactccataaataacttttatttctcttaatggaaaaaatgcgctccttgcgtattcccgaaaaaaacaatggcatatggatgggcacctaacgacatcatgaaactgtcttgattcaattgtagcaacagacatttattttctacttcaaattttaattttgtttgataagtgcagcaggtacaccatacaataaaggaaattgggaacaagattccaacacattacctgatgatttgttgatatattttccaggtttcaggctttgcatcgtactgcaaccaagttttgccgccattcctgtatcagttggtttacagcgctgctgaagaggtttcatggttttctgatattcagcagcaaaactatctggtgtgcaattttgtaatcctactcctgcaaaattgtaaaaccaacattagtttgccccacacctccatagttccattaattgtctgcaaagagcacggttatagcaacacctcaggaggacaggacctttttagcagtctgcccaaaatcacaagacagacaacTtttttggtaatcgaagagctaaatcttttttttttaaaccaagggaagagttaacacctagctgctacggctctgagattattccttagtttgcagcgatagtgctaatcagacaactagtacataaaaataaaaatcaaacaacagaaataaatccttttatccaattataaaaaagtcagatacatatcatatcattcaagcattagtataatggaccagcaccaaagttcctacacacaatgggaaagcccactgatctatctcttatgatgaaaacgagctatggattttaatgaaagaattatatctatgaattctagcataaattctagcaaacattagaaagattaagttctgaagtttctagggcataattgttctgatccctaattgtgaattataactataacaaaatcactcttatgcacaggaattcaatgggatgcaccgaatgtgctaaaggcagacttccagcggaagcattcattcgttcacgttcctttcagaaactggcattcgagttttgagtttctcgagtcgctcccataaacctaatccccgaattctcccgcagcccaacatttcattcaaccacgaaatcacgccgcgcgtacccaccagtcacctcgctgtagcaagaattcatccataagaggcgtacctgatctcacaaccctagatctcctggaccccggagaacccgaggcggcgaaaccctagcccacccaccgccggcaagacccccgacctccgcaaccgcggagagagagagagCGAGCGAGGAGTCGGAGGCGAGCACGAACCCTCAAGGCCGCGAATCCcccacacccgcccgtcgccggagttcaccggaaggcttcgcggcgcccgcggcggaggccggcgagcagcgaatcgtcggaggcggaagagacggattttttttttttttgggaaatttttgaactctggtttgttcacttgccgcctc
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| CDS seq | atgaaacctcttcagcagcgctgtaaaccaactgatacaggaatggcggcaaaacttggttgcagtacgatgcaaagcctgaaacctggaaaatatatcaacaaatcatcaggcaatgctagcacaaaatacagaagagctggtgcctcatcgcctcaattgtatactgaaaaacaaagtgcaccaaaggatggtagctttatggaagcactgttccatgattctaagaatgtgtctgctcgaccaccccgccattctggaaagatcgcacttcaactgttcccaatagatgaggagtttcagaagtccctgcagcagaaaaaccacaatccttacctggaattgactgtggctcctcgaaagaaaatatcctcagttctgcagcatctcaacacaaaatggggcaattctcagtgtgcaagaggtgaactcatgctcttccctgacggtactaggcttgataacataaatggcagtgagagatggactcgtagtgattcttgcacagcagctgatgtgcatgttgctgttggcagcccttcgacatttcgcttaagatatggttggtttccacccaattttggggaacaaaacagtggagtatctttaggattagtgcactctgcaggcaatataatcgacaacgagcctttagatcctgttgtcagggaacagaaacagatgactgctttgagtgaattcccgagtaactttgctgcaccgtccactgaggccaacacagtaaagactatgaaacaggataatcaaagcaaagagacaccactttcatggattgactgcatatctaatataagttttggagcactattagctgaagctgcgccttctcaagacagcaagcagttacttccacaaaacaactcaagtttccaacagatacctcttaccgctgattcatttgatgctgctattgcttccctgattgctcggcaacaagcaagtagccagccgaaggtgtcaactccatccctttgggatgcagaagaaacgtgccatgcatttccttcccagaatcgaatttcacgcaggacgcctggtacaactcctagcagttgtggtgctagtaccttgtctgtcctaggcacaattctggaatctggtacagacggtgagaagcaatgttctactgaagatagaagagaggaaccgaaccctcaggcatcactcttggccaatgatgacaataatgtgaagccagacatcccagtgtctgaatctactggggagccaagactgggagcatcttgttttcagtctgaatcgactggggagccagaagtcggagcatcttgttcaagacttttgagtggcaccgacagtttaagtgtgagcgatttacttgcaaacagcttggatgcattccagaaattctctgttttctga
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| Protein seq | MKPLQQRCKPTDTGMAAKLGCSTMQSLKPGKYINKSSGNASTKYRRAGASSPQLYTEKQSAPKDGSFMEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF |
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| Function | TSL-kinase interacting protein 1 [UniProtKB/Swiss-Prot:Q8LJT8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0005620 | OsLima_01g0005620.01 | Chr01 | 4241254 | 4244859 | - | NAM | ||
| CDS seq | atgaaacctcttcagcagcgctgtaaaccaactgatacaggaatggcggcaaaacttggttgcagtacgatgcaaagcctgaaacctggaaaatatatcaacaaatcatcaggcaatgctagcacaaaatacagaagagctggtgcctcatcgcctcaattgtatactgaaaaacaaagtgcaccaaaggatggtagctttatggaagcactgttccatgattctaagaatgtgtctgctcgaccaccccgccattctggaaagatcgcacttcaactgttcccaatagatgaggagtttcagaagtccctgcagcagaaaaaccacaatccttacctggaattgactgtggctcctcgaaagaaaatatcctcagttctgcagcatctcaacacaaaatggggcaattctcagtgtgcaagaggtgaactcatgctcttccctgacggtactaggcttgataacataaatggcagtgagagatggactcgtagtgattcttgcacagcagctgatgtgcatgttgctgttggcagcccttcgacatttcgcttaagatatggttggtttccacccaattttggggaacaaaacagtggagtatctttaggattagtgcactctgcaggcaatataatcgacaacgagcctttagatcctgttgtcagggaacagaaacagatgactgctttgagtgaattcccgagtaactttgctgcaccgtccactgaggccaacacagtaaagactatgaaacaggataatcaaagcaaagagacaccactttcatggattgactgcatatctaatataagttttggagcactattagctgaagctgcgccttctcaagacagcaagcagttacttccacaaaacaactcaagtttccaacagatacctcttaccgctgattcatttgatgctgctattgcttccctgattgctcggcaacaagcaagtagccagccgaaggtgtcaactccatccctttgggatgcagaagaaacgtgccatgcatttccttcccagaatcgaatttcacgcaggacgcctggtacaactcctagcagttgtggtgctagtaccttgtctgtcctaggcacaattctggaatctggtacagacggtgagaagcaatgttctactgaagatagaagagaggaaccgaaccctcaggcatcactcttggccaatgatgacaataatgtgaagccagacatcccagtgtctgaatctactggggagccaagactgggagcatcttgttttcagtctgaatcgactggggagccagaagtcggagcatcttgttcaagacttttgagtggcaccgacagtttaagtgtgagcgatttacttgcaaacagcttggatgcattccagaaattctctgttttctga
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| Protein seq | MKPLQQRCKPTDTGMAAKLGCSTMQSLKPGKYINKSSGNASTKYRRAGASSPQLYTEKQSAPKDGSFMEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0005620 | OsLima_01g0005620.02 | Chr01 | 4241254 | 4244859 | - | NAM | ||
| CDS seq | atgaaacctcttcagcagcgctgtaaaccaactgatacaggaatggcggcaaaacttggttgcagtacgatgcaaagcctgaaacctggaaaatatatcaacaaatcatcaggcaatgctagcacaaaatacagaagagctggtgcctcatcgcctcaattgtatactgaaaaacaaagtgcaccaaaggatggtagctttatggaagcactgttccatgattctaagaatgtgtctgctcgaccaccccgccattctggaaagatcgcacttcaactgttcccaatagatgaggagtttcagaagtccctgcagcagaaaaaccacaatccttacctggaattgactgtggctcctcgaaagaaaatatcctcagttctgcagcatctcaacacaaaatggggcaattctcagtgtgcaagaggtgaactcatgctcttccctgacggtactaggcttgataacataaatggcagtgagagatggactcgtagtgattcttgcacagcagctgatgtgcatgttgctgttggcagcccttcgacatttcgcttaagatatggttggtttccacccaattttggggaacaaaacagtggagtatctttaggattagtgcactctgcaggcaatataatcgacaacgagcctttagatcctgttgtcagggaacagaaacagatgactgctttgagtgaattcccgagtaactttgctgcaccgtccactgaggccaacacagtaaagactatgaaacaggataatcaaagcaaagagacaccactttcatggattgactgcatatctaatataagttttggagcactattagctgaagctgcgccttctcaagacagcaagcagttacttccacaaaacaactcaagtttccaacagatacctcttaccgctgattcatttgatgctgctattgcttccctgattgctcggcaacaagcaagtagccagccgaaggtgtcaactccatccctttgggatgcagaagaaacgtgccatgcatttccttcccagaatcgaatttcacgcaggacgcctggtacaactcctagcagttgtggtgctagtaccttgtctgtcctaggcacaattctggaatctggtacagacggtgagaagcaatgttctactgaagatagaagagaggaaccgaaccctcaggcatcactcttggccaatgatgacaataatgtgaagccagacatcccagtgtctgaatctactggggagccaagactgggagcatcttgttttcagtctgaatcgactggggagccagaagtcggagcatcttgttcaagacttttgagtggcaccgacagtttaagtgtgagcgatttacttgcaaacagcttggatgcattccagaaattctctgttttctga
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| Protein seq | MKPLQQRCKPTDTGMAAKLGCSTMQSLKPGKYINKSSGNASTKYRRAGASSPQLYTEKQSAPKDGSFMEALFHDSKNVSARPPRHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMTALSEFPSNFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEAAPSQDSKQLLPQNNSSFQQIPLTADSFDAAIASLIARQQASSQPKVSTPSLWDAEETCHAFPSQNRISRRTPGTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRREEPNPQASLLANDDNNVKPDIPVSESTGEPRLGASCFQSESTGEPEVGASCSRLLSGTDSLSVSDLLANSLDAFQKFSVF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 4243745 | 4244693 | - | OsLima_01g0005620.02 | OsLima_01g0005620.01,OsLima_01g0005620.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.091035 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0182400 | RBH | 0.300079 | 0.920215 | 3.985768 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08680 | RBH | 0.202035 | 0.616194 | 1.021494 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0182400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006120 | RBH | 0.278965 | 1.284453 | 0.619831 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005790 | RBH | 0.0 | 1.336260 | 0.277681 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006100 | RBH | 0.617516 | 1.089668 | 2.081059 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005680 | RBH | 0.104590 | 0.057802 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005870 | RBH | 0.980577 | 1.857731 | 0.635257 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0075200 | RBH | 1.356286 | 0.9454075 | 1.9550055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005820 | RBH | 0.0 | 0.083091 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0075500 | RBH | 2.906838 | 0.6347845 | 4.331717 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005830 | RBH | 0.059281 | 1.570190 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005890 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005830 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005790 | RBH | 0.0 | 2.750158 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005840 | RBH | 0.075005 | 0.868582 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005720 | RBH | 0.000000 | 0.000000 | 1.648482 |
