Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsZS97_01G0034200 | OGI:01006630 | 2/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:1960796-1963513 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TTAGATGCTCTCAGGGTGATGCTCATTCAGGAACTTCCTGACCCAACGAGCACGACGAGCCTCATTCTTCTGAATGTATACAAGGCTTTCAGCCTTCTCCTTAGTTAGATAAGCTAGAACAAGGTCCAGCTGATCCTCACTGAAACCTGGAAGATCCATCACTGTGTTGCACAAATCAGGGTGAACCTCAGTATGTGCAGTAGCGCCTATTGCTGAAGCCATGTTGTTCACTGAATCTGTCATATTGCTGATGAGAGCAACTTCACCTTCATTCAAAGCAGATGCTCTCTTCCTCTTCTTATCTGAGGTAGAATCCTCACCAGTAGGCCCAACACCACTTGCTCGAGCAGCAATTCCAGGACCTTCAGCACCCACACCACTTGGTCCAGCAGCAATACCATCCCCAATAGTGCCATCAAGAGGTCCCAGACCACTGTCAGCCTCACCAGCAGGGTTTCCAAGTGCTTCATTTGACCCCATAGCAAATCTCCCAGTGGCTTGCCTATTTGAAAAAATTATTGCCATTTGTGTATAGTTCTCTAAAGGCACATTGAGAAACTCAGCATCCTTAGGGTGTTCCTATATGAGAACATTAGATTTAAAGTGAGATATGATGTGTACTAATGCAGTGTGTTTTGTATGTGATAGTTAGACACAAACCTTGACATGTCCCATGTAGTGCTCCTCTTCTAGGATAATCGTTGAGGTCTGATCATCCCAAAGAGCCCCACTAAGGTCTTTGAGCCTAGTGATACGCACCCACCTTTGACGCCATTTGCGAAGATGGTTATACACTTGGGTTCCACTAATTTCAATTCCATAGTGATCAGACAAAGATCTAGCAACTTGGTTAAGGTGAGCTTCCTTGAAACCCTTGTCAGTCCTAACACCTGTTGCTATAAGCTCAACCATGCGCCTTAGCATTAAGCTAGACATGTTGGTTGTCCAATGCAAGGCTCCATGGTGTCCACCATGGCCACCATGGCCACCATTCCCGCCACCAGCCTCAGCCATCCTATATTTACCACATGCAAATGAACAAATAAATTTAACATACATCGATAGATGTAATAAACAGCATCATTGCAAATATCTCGAGGTCTCAAATTAATAGATAACAGTGCAACAGGGTACAACAATCATCATGCATGAATAGATAACAGTGCAACACCATCCTAAGTTCACAGATAGATAGTTACAAATTAATCCCTAAGCATGTCAGACCCTGGACGACCCTCTATTGTTCCACATAGCACCAGCCAAATCATCCCTAATTTGCGCCATTCCCCTATTGTCTTCATCTAAGTCATCGGGCTCCTCATCATCACTATCTGAGTTCCAATCACTCTCTAGTGGCACATGGTCATCCATCCCAAACTGAAGTATCCAGTTATGAAGTATGCAGCATGCAAGGACCAATTTGACTTGGGTCTTGTATGGATGGAAAGGCTTGTTATAGAGTATTCTGAAGCGGTTTTTGAGTGCGCCAAATGCCCGCTCGATCGTGACCCTTAAAGAGGAGTGTCTTAGATTAAACAACTCTCTCGAATCACGAGGGTAGTTTCTTCTATCATACTCCTTCAAATGGTATCGACACCCACGATATGGCGGAAGGAACCCCGGTCTAGCAGCATATCCAGCATCAACGAGATAGTATTTTCCTAAGAGATAAAAGCTATGAGTGTAATAATCATATGAGATAAATGAGAATCCTTATTAATCGTTAGTTTTAACACTTCTATTACCTGAGGGGACACTAAGACCATCATCCCTCTCCAAGGCATCTGCAAGTATGAGGGCATCATGTGCAGATCCTTCCCACCCAGCAAGTACGTATGTAAATCCAAGATCAAAGTCCACTGCAGCCATTACATTCTGGGTGGTCTCTTTCTTCCTACCCCTAAAGGCAGCAGATATTGTTGATGGAACTCGAGCAAGCACATGAGTTCCATCTATTGCACCAATGCAATCCTAATGACCAGTGAGAAATATTAGGACATGATTGTTGAAAGAACATATTTTGTAGTCAAAATGCTGCAAACAAATTTTTACCTTAAAATAAGGGTTGAATCTTCGATTGGATGTAATTTTTGAATGAGGCTCAGATGAGGGTGGTTTTATCATCTCATTTCGCAGCTCACCAATAGAGAATAATACCTCAGCGAAGTATCTACTGATAGTTTCAATTGACCTCCTAAAAGTGGGTTGCAAAGCTCTAAATCTGTGGTTGTGGCCTACAACAAGAAGAAACATGGCAACTTGTTCTTCCACTGAGCTATGTATACTGTCCCGCAACAACGCTCTTTCTCGTAACAAGTTACACAGCTGAAAAAATGGGGCTCTCTTCATTCTGAGCTGATTTAAGCAATTTGTATCATCTGTATGATAGATGAAACTAAGATTGGATTGTCTAGCTATGTCCCTTTCGGACAATGGGCCATAGGAGATCCTAGGGGTACGTCGCATGGCTCTTCTTGTAATAAACAGAATGTAAGCATTCATTACAGCAACTAATCCAGCTGCTTTAGCAATCAGGGACCGCCGAATGCGTTGCATTTCTTCCATCTATGCAAATAACATATATAATGCATAGTCAATTCAGAAATAAAAGGATGGTCTTGTCGCTACTAAGTACTGCAAATCAATTTCGTATGCATGTATGCCACGGCCGCCACATCCAAGGGATGCTACCTCCAGTGGCATACCATCATCGACCAT
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CDS seq | ATGGTCGATGATGGCCACAACCACAGATTTAGAGCTTTGCAACCCACTTTTAGGAGGTCAATTGAAACTATCAGTAGATACTTCGCTGAGGTATTATTCTCTATTGGTGAGCTGCGAAATGAGATGATAAAACCACCCTCATCTGAGCCTCATTCAAAAATTACATCCAATCGAAGATTCAACCCTTATTTTAAGGATTGCATTGGTGCAATAGATGGAACTCATGTGCTTGCTCGAGTTCCATCAACAATATCTGCTGCCTTTAGGGGTAGGAAGAAAGAGACCACCCAGAATGTAATGGCTGCAGTGGACTTTGATCTTGGATTTACATACGTACTTGCTGGGTGGGAAGGATCTGCACATGATGCCCTCATACTTGCAGATGCCTTGGAGAGGGATGATGGTCTTAGTGTCCCCTCAGGAAAATACTATCTCGTTGATGCTGGATATGCTGCTAGACCGGGGTTCCTTCCGCCATATCGTGGGTGTCGATACCATTTGAAGGAGTATGATAGAAGAAACTACCCTCGTGATTCGAGAGAGTTGTTTAATCTAAGACACTCCTCTTTAAGGGTCACGATCGAGCGGGCATTTGGCGCACTCAAAAACCGCTTCAGAATACTCTATAACAAGCCTTTCCATCCATACAAGACCCAAGTCAAATTGGTCCTTGCATGCTGCATACTTCATAACTGGATACTTCAGTTTGGGATGGATGACCATGTGCCACTAGAGAGTGATTGGAACTCAGATAGTGATGATGAGGAGCCCGATGACTTAGATGAAGACAATAGGGGAATGGCGCAAATTAGGGATGATTTGGCTGGTGCTATGTGGAACAATAGAGGGATGGCTGAGGCTGGTGGCGGGAATGGTGGCCATGGTGGCCATGGTGGACACCATGGAGCCTTGCATTGGACAACCAACATGTCTAGCTTAATGCTAAGGCGCATGGTTGAGCTTATAGCAACAGGTGTTAGGACTGACAAGGGTTTCAAGGAAGCTCACCTTAACCAAGTTGCTAGATCTTTGTCTGATCACTATGGAATTGAAATTAGTGGAACCCAAGTGTATAACCATCTTCGCAAATGGCGTCAAAGGTGGGTGCGTATCACTAGGCTCAAAGACCTTAGTGGGGCTCTTTGGGATGATCAGACCTCAACGATTATCCTAGAAGAGGAGCACTACATGGGACATGTCAAGGAACACCCTAAGGATGCTGAGTTTCTCAATGTGCCTTTAGAGAACTATACACAAATGGCAATAATTTTTTCAAATAGGCAAGCCACTGGGAGATTTGCTATGGGGTCAAATGAAGCACTTGGAAACCCTGCTGGTGAGGCTGACAGTGGTCTGGGACCTCTTGATGGCACTATTGGGGATGGTATTGCTGCTGGACCAAGTGGTGTGGGTGCTGAAGGTCCTGGAATTGCTGCTCGAGCAAGTGGTGTTGGGCCTACTGGTGAGGATTCTACCTCAGATAAGAAGAGGAAGAGAGCATCTGCTTTGAATGAAGGTGAAGTTGCTCTCATCAGCAATATGACAGATTCAGTGAACAACATGGCTTCAGCAATAGGCGCTACTGCACATACTGAGGTTCACCCTGATTTGTGCAACACAGTGATGGATCTTCCAGGTTTCAGTGAGGATCAGCTGGACCTTGTTCTAGCTTATCTAACTAAGGAGAAGGCTGAAAGCCTTGTATACATTCAGAAGAATGAGGCTCGTCGTGCTCGTTGGGTCAGGAAGTTCCTGAATGAGCATCACCCTGAGAGCATCTAA
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Protein seq | MVDDGHNHRFRALQPTFRRSIETISRYFAEVLFSIGELRNEMIKPPSSEPHSKITSNRRFNPYFKDCIGAIDGTHVLARVPSTISAAFRGRKKETTQNVMAAVDFDLGFTYVLAGWEGSAHDALILADALERDDGLSVPSGKYYLVDAGYAARPGFLPPYRGCRYHLKEYDRRNYPRDSRELFNLRHSSLRVTIERAFGALKNRFRILYNKPFHPYKTQVKLVLACCILHNWILQFGMDDHVPLESDWNSDSDDEEPDDLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHGGHHGALHWTTNMSSLMLRRMVELIATGVRTDKGFKEAHLNQVARSLSDHYGIEISGTQVYNHLRKWRQRWVRITRLKDLSGALWDDQTSTIILEEEHYMGHVKEHPKDAEFLNVPLENYTQMAIIFSNRQATGRFAMGSNEALGNPAGEADSGLGPLDGTIGDGIAAGPSGVGAEGPGIAARASGVGPTGEDSTSDKKRKRASALNEGEVALISNMTDSVNNMASAIGATAHTEVHPDLCNTVMDLPGFSEDQLDLVLAYLTKEKAESLVYIQKNEARRARWVRKFLNEHHPESI |
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Function | Putative nuclease HARBI1 [UniProtKB/Swiss-Prot:Q17QR8] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsZS97_01G0034200 | OsZS97_01T0034200.1 | Chr01 | 1960796 | 1963513 | - | makerRMon | ||
CDS seq | ATGGTCGATGATGGCCACAACCACAGATTTAGAGCTTTGCAACCCACTTTTAGGAGGTCAATTGAAACTATCAGTAGATACTTCGCTGAGGTATTATTCTCTATTGGTGAGCTGCGAAATGAGATGATAAAACCACCCTCATCTGAGCCTCATTCAAAAATTACATCCAATCGAAGATTCAACCCTTATTTTAAGGATTGCATTGGTGCAATAGATGGAACTCATGTGCTTGCTCGAGTTCCATCAACAATATCTGCTGCCTTTAGGGGTAGGAAGAAAGAGACCACCCAGAATGTAATGGCTGCAGTGGACTTTGATCTTGGATTTACATACGTACTTGCTGGGTGGGAAGGATCTGCACATGATGCCCTCATACTTGCAGATGCCTTGGAGAGGGATGATGGTCTTAGTGTCCCCTCAGGAAAATACTATCTCGTTGATGCTGGATATGCTGCTAGACCGGGGTTCCTTCCGCCATATCGTGGGTGTCGATACCATTTGAAGGAGTATGATAGAAGAAACTACCCTCGTGATTCGAGAGAGTTGTTTAATCTAAGACACTCCTCTTTAAGGGTCACGATCGAGCGGGCATTTGGCGCACTCAAAAACCGCTTCAGAATACTCTATAACAAGCCTTTCCATCCATACAAGACCCAAGTCAAATTGGTCCTTGCATGCTGCATACTTCATAACTGGATACTTCAGTTTGGGATGGATGACCATGTGCCACTAGAGAGTGATTGGAACTCAGATAGTGATGATGAGGAGCCCGATGACTTAGATGAAGACAATAGGGGAATGGCGCAAATTAGGGATGATTTGGCTGGTGCTATGTGGAACAATAGAGGGATGGCTGAGGCTGGTGGCGGGAATGGTGGCCATGGTGGCCATGGTGGACACCATGGAGCCTTGCATTGGACAACCAACATGTCTAGCTTAATGCTAAGGCGCATGGTTGAGCTTATAGCAACAGGTGTTAGGACTGACAAGGGTTTCAAGGAAGCTCACCTTAACCAAGTTGCTAGATCTTTGTCTGATCACTATGGAATTGAAATTAGTGGAACCCAAGTGTATAACCATCTTCGCAAATGGCGTCAAAGGTGGGTGCGTATCACTAGGCTCAAAGACCTTAGTGGGGCTCTTTGGGATGATCAGACCTCAACGATTATCCTAGAAGAGGAGCACTACATGGGACATGTCAAGGAACACCCTAAGGATGCTGAGTTTCTCAATGTGCCTTTAGAGAACTATACACAAATGGCAATAATTTTTTCAAATAGGCAAGCCACTGGGAGATTTGCTATGGGGTCAAATGAAGCACTTGGAAACCCTGCTGGTGAGGCTGACAGTGGTCTGGGACCTCTTGATGGCACTATTGGGGATGGTATTGCTGCTGGACCAAGTGGTGTGGGTGCTGAAGGTCCTGGAATTGCTGCTCGAGCAAGTGGTGTTGGGCCTACTGGTGAGGATTCTACCTCAGATAAGAAGAGGAAGAGAGCATCTGCTTTGAATGAAGGTGAAGTTGCTCTCATCAGCAATATGACAGATTCAGTGAACAACATGGCTTCAGCAATAGGCGCTACTGCACATACTGAGGTTCACCCTGATTTGTGCAACACAGTGATGGATCTTCCAGGTTTCAGTGAGGATCAGCTGGACCTTGTTCTAGCTTATCTAACTAAGGAGAAGGCTGAAAGCCTTGTATACATTCAGAAGAATGAGGCTCGTCGTGCTCGTTGGGTCAGGAAGTTCCTGAATGAGCATCACCCTGAGAGCATCTAA
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Protein seq | MVDDGHNHRFRALQPTFRRSIETISRYFAEVLFSIGELRNEMIKPPSSEPHSKITSNRRFNPYFKDCIGAIDGTHVLARVPSTISAAFRGRKKETTQNVMAAVDFDLGFTYVLAGWEGSAHDALILADALERDDGLSVPSGKYYLVDAGYAARPGFLPPYRGCRYHLKEYDRRNYPRDSRELFNLRHSSLRVTIERAFGALKNRFRILYNKPFHPYKTQVKLVLACCILHNWILQFGMDDHVPLESDWNSDSDDEEPDDLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHGGHHGALHWTTNMSSLMLRRMVELIATGVRTDKGFKEAHLNQVARSLSDHYGIEISGTQVYNHLRKWRQRWVRITRLKDLSGALWDDQTSTIILEEEHYMGHVKEHPKDAEFLNVPLENYTQMAIIFSNRQATGRFAMGSNEALGNPAGEADSGLGPLDGTIGDGIAAGPSGVGAEGPGIAARASGVGPTGEDSTSDKKRKRASALNEGEVALISNMTDSVNNMASAIGATAHTEVHPDLCNTVMDLPGFSEDQLDLVLAYLTKEKAESLVYIQKNEARRARWVRKFLNEHHPESI
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0063415 | 0.0257865 | 0.027925 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0186900 | SBH | 2.032762 | 2.997863 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19370 | SBH | 0.0 | 0.0 | 0.000000 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0186900 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006560 | SBH | 0.0 | 0.0 | 2.404276 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006210 | SBH | 0.069970 | 0.0 | 0.512102 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006520 | SBH | 0.0 | 0.566940 | 1.080664 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006040 | SBH | 0.039012 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006230 | SBH | 0.0 | 1.878553 | 1.232357 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0034300 | RBH | 0 | 0.011879 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0060700 | RBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005980 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006190 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006190 | SBH | 0.343280 | 0.0 | 0.684844 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006150 | SBH | 0.064658 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006190 | SBH | 0.000000 | 0.486823 | 0.776887 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |