Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0005980 | OGI:01016040 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:4506516-4508343 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tccctccaagtccaagtgaccaaccatcatcaatcatcgctaagcccacctcggagatctcgagtCGATCGTCGTCGTCGTAGCTGTAGAGGTAGTTAATTATCTCGTTTTAGATGAGCTCACTGACGGCGGCGCAGTTCCGGTCGCTGTTTGAGATGGCAGGAGGGGAGGATATCTCGTTTCTGTTTGGTGATGATGAGGCGGCGGCGGTGGCGGCGCCGGTGGAGTTGCAGGGGAAGAGGGGGTGGGAGGAGGTGGATCAAGGGGAGGGGTCTGGGGCGGTGGCGGCGAAGAGGCAGCGGTCGCCGACGAGCTCGAGGGAGAATAGTAGCGGGAGTAATGAGGGTGGGCAGGAGGAGGTGTCTGAGGCGGCGGCGGCCATGGCGGCGGCGGTGGGGAGGGGTGGGGGGAGGAGGCTGTGGGTGAAGGAGAGGGACTCGGAGTGGTGGGACATGGTGAGTAGCCCGGATTACCCGGACTCGGAGTTCAGGAAGGCGTTCCGCATGTCCAAGGCCACGTTCGAGGTGGTCTGCGACGAGCTCGCCGCCGCCGTCGCCAAGGAGGACACCATGCTCCGCGCCGCCATCCCGGTGCGCAAGCGCGTCGCCGTCTGCGTCTGGCGCCTCGCCACGGGGGAGCCCCTGAGGCTGGTGTCCAAGCGCTTCGGCCTCGGGATCTCCACCTGCCACAAGCTCGTGCTCGAGGTCTGCGCTGCGCTCAAGGCCATGGTGATGCCCAAGGTGGTGCGCTGGCCCGAGGCCGGCGACGAcgcggcggccatcgccgcgcacttcgaggccatctccgggatctccggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaagtccaacgtcgcctcctactacaaccgccgccacacggagcgcaaccagaagacctcctactccatgaccgtccagtgcgtcgtcgactccaccggcgccttcaccgacgtctgcatcggctggccggggtccaactccgacgaggaggtgctcgagaagtcggcgctgtacctgcaccgcggcgttcccggcctgatccagggccagtgggtggtcggcggcgggagcttcccgctcatggactggatgctcgtgccctacacccaccagaacctgacgtgggcgcagcacatgctcaacgagaaggtcgccgccgtgcgcggcgtggcgcgcgacgcgttcgagcgcctcaagcgccggtggggctgcctccagaagcgcaccgaggtgaagctgctcgacctccccaccgtgctcggcgcctgctgcgtcctccacaacatctgcgagcgcagcggcgacgccgtcgtcgacgccgacgactgcgccttcgacctcttcgacgacgacatggtcgccgagaacgccgtccgctccaccgccgccgcgcaggcccgcgacgccatcgcccacaacctcctccacagcggcggcggcgcatccttcttctgatcaagcatcatcgccgttcttggtccgatcaacagcgataccaaacaaaccaacaaaaataaaaaagaaaaacaagattcagtttttaggtgtataggaggagcttctccattttttgtcggaaatggagcagtgaacagttttcgctttatcgtcaggagggacaggaaagttcagagtcctagtagtctcaaagtaACattagtttcttggttggattttcgattgatttggttcttttagatcttgagagattgtttttcatggggttgtaattaattgcctgcataatcttgtatcccccagattatcaattaatcaaacctgaaaaagAaaatcatttttttgcc
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| CDS seq | ATGAGCTCACTGACGGCGGCGCAGTTCCGGTCGCTGTTTGAGATGGCAGGAGGGGAGGATATCTCGTTTCTGTTTGGTGATGATGAGGCGGCGGCGGTGGCGGCGCCGGTGGAGTTGCAGGGGAAGAGGGGGTGGGAGGAGGTGGATCAAGGGGAGGGGTCTGGGGCGGTGGCGGCGAAGAGGCAGCGGTCGCCGACGAGCTCGAGGGAGAATAGTAGCGGGAGTAATGAGGGTGGGCAGGAGGAGGTGTCTGAGGCGGCGGCGGCCATGGCGGCGGCGGTGGGGAGGGGTGGGGGGAGGAGGCTGTGGGTGAAGGAGAGGGACTCGGAGTGGTGGGACATGGTGAGTAGCCCGGATTACCCGGACTCGGAGTTCAGGAAGGCGTTCCGCATGTCCAAGGCCACGTTCGAGGTGGTCTGCGACGAGCTCGCCGCCGCCGTCGCCAAGGAGGACACCATGCTCCGCGCCGCCATCCCGGTGCGCAAGCGCGTCGCCGTCTGCGTCTGGCGCCTCGCCACGGGGGAGCCCCTGAGGCTGGTGTCCAAGCGCTTCGGCCTCGGGATCTCCACCTGCCACAAGCTCGTGCTCGAGGTCTGCGCTGCGCTCAAGGCCATGGTGATGCCCAAGGTGGTGCGCTGGCCCGAGGCCGGCGACGAcgcggcggccatcgccgcgcacttcgaggccatctccgggatctccggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaagtccaacgtcgcctcctactacaaccgccgccacacggagcgcaaccagaagacctcctactccatgaccgtccagtgcgtcgtcgactccaccggcgccttcaccgacgtctgcatcggctggccggggtccaactccgacgaggaggtgctcgagaagtcggcgctgtacctgcaccgcggcgttcccggcctgatccagggccagtgggtggtcggcggcgggagcttcccgctcatggactggatgctcgtgccctacacccaccagaacctgacgtgggcgcagcacatgctcaacgagaaggtcgccgccgtgcgcggcgtggcgcgcgacgcgttcgagcgcctcaagcgccggtggggctgcctccagaagcgcaccgaggtgaagctgctcgacctccccaccgtgctcggcgcctgctgcgtcctccacaacatctgcgagcgcagcggcgacgccgtcgtcgacgccgacgactgcgccttcgacctcttcgacgacgacatggtcgccgagaacgccgtccgctccaccgccgccgcgcaggcccgcgacgccatcgcccacaacctcctccacagcggcggcggcgcatccttcttctga
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| Protein seq | MSSLTAAQFRSLFEMAGGEDISFLFGDDEAAAVAAPVELQGKRGWEEVDQGEGSGAVAAKRQRSPTSSRENSSGSNEGGQEEVSEAAAAMAAAVGRGGGRRLWVKERDSEWWDMVSSPDYPDSEFRKAFRMSKATFEVVCDELAAAVAKEDTMLRAAIPVRKRVAVCVWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAALKAMVMPKVVRWPEAGDDAAAIAAHFEAISGISGVVGAIYTTHIPIIAPKSNVASYYNRRHTERNQKTSYSMTVQCVVDSTGAFTDVCIGWPGSNSDEEVLEKSALYLHRGVPGLIQGQWVVGGGSFPLMDWMLVPYTHQNLTWAQHMLNEKVAAVRGVARDAFERLKRRWGCLQKRTEVKLLDLPTVLGACCVLHNICERSGDAVVDADDCAFDLFDDDMVAENAVRSTAAAQARDAIAHNLLHSGGGASFF |
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| Function | Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 [UniProtKB/Swiss-Prot:Q94K49] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0005980 | OsLima_01g0005980.01 | Chr01 | 4506516 | 4508343 | + | NAM | ||
| CDS seq | ATGAGCTCACTGACGGCGGCGCAGTTCCGGTCGCTGTTTGAGATGGCAGGAGGGGAGGATATCTCGTTTCTGTTTGGTGATGATGAGGCGGCGGCGGTGGCGGCGCCGGTGGAGTTGCAGGGGAAGAGGGGGTGGGAGGAGGTGGATCAAGGGGAGGGGTCTGGGGCGGTGGCGGCGAAGAGGCAGCGGTCGCCGACGAGCTCGAGGGAGAATAGTAGCGGGAGTAATGAGGGTGGGCAGGAGGAGGTGTCTGAGGCGGCGGCGGCCATGGCGGCGGCGGTGGGGAGGGGTGGGGGGAGGAGGCTGTGGGTGAAGGAGAGGGACTCGGAGTGGTGGGACATGGTGAGTAGCCCGGATTACCCGGACTCGGAGTTCAGGAAGGCGTTCCGCATGTCCAAGGCCACGTTCGAGGTGGTCTGCGACGAGCTCGCCGCCGCCGTCGCCAAGGAGGACACCATGCTCCGCGCCGCCATCCCGGTGCGCAAGCGCGTCGCCGTCTGCGTCTGGCGCCTCGCCACGGGGGAGCCCCTGAGGCTGGTGTCCAAGCGCTTCGGCCTCGGGATCTCCACCTGCCACAAGCTCGTGCTCGAGGTCTGCGCTGCGCTCAAGGCCATGGTGATGCCCAAGGTGGTGCGCTGGCCCGAGGCCGGCGACGAcgcggcggccatcgccgcgcacttcgaggccatctccgggatctccggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaagtccaacgtcgcctcctactacaaccgccgccacacggagcgcaaccagaagacctcctactccatgaccgtccagtgcgtcgtcgactccaccggcgccttcaccgacgtctgcatcggctggccggggtccaactccgacgaggaggtgctcgagaagtcggcgctgtacctgcaccgcggcgttcccggcctgatccagggccagtgggtggtcggcggcgggagcttcccgctcatggactggatgctcgtgccctacacccaccagaacctgacgtgggcgcagcacatgctcaacgagaaggtcgccgccgtgcgcggcgtggcgcgcgacgcgttcgagcgcctcaagcgccggtggggctgcctccagaagcgcaccgaggtgaagctgctcgacctccccaccgtgctcggcgcctgctgcgtcctccacaacatctgcgagcgcagcggcgacgccgtcgtcgacgccgacgactgcgccttcgacctcttcgacgacgacatggtcgccgagaacgccgtccgctccaccgccgccgcgcaggcccgcgacgccatcgcccacaacctcctccacagcggcggcggcgcatccttcttctga
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| Protein seq | MSSLTAAQFRSLFEMAGGEDISFLFGDDEAAAVAAPVELQGKRGWEEVDQGEGSGAVAAKRQRSPTSSRENSSGSNEGGQEEVSEAAAAMAAAVGRGGGRRLWVKERDSEWWDMVSSPDYPDSEFRKAFRMSKATFEVVCDELAAAVAKEDTMLRAAIPVRKRVAVCVWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAALKAMVMPKVVRWPEAGDDAAAIAAHFEAISGISGVVGAIYTTHIPIIAPKSNVASYYNRRHTERNQKTSYSMTVQCVVDSTGAFTDVCIGWPGSNSDEEVLEKSALYLHRGVPGLIQGQWVVGGGSFPLMDWMLVPYTHQNLTWAQHMLNEKVAAVRGVARDAFERLKRRWGCLQKRTEVKLLDLPTVLGACCVLHNICERSGDAVVDADDCAFDLFDDDMVAENAVRSTAAAQARDAIAHNLLHSGGGASFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0186900 | RBH | 2.032762 | 2.997863 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g09220 | RBH | 1.100549 | 1.719654 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0186900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006560 | RBH | 0.0 | 0.0 | 2.404276 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006210 | RBH | 0.069970 | 0.0 | 0.512102 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006520 | RBH | 0.0 | 0.566940 | 1.080664 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006040 | RBH | 0.039012 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006230 | RBH | 0.0 | 1.878553 | 1.232357 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0079500 | RBH | 17.24516 | 341.6403965 | 7.737721 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006180 | RBH | 0.052988 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0079700 | RBH | 23.284312 | 374.70459 | 3.0108985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006240 | RBH | 1.290106 | 3.457970 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006190 | RBH | 0.343280 | 0.0 | 0.684844 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006150 | RBH | 0.064658 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006190 | RBH | 0.000000 | 0.486823 | 0.776887 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006090 | RBH | 0.0 | 0.0 | 1.289355 |
