Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0009320 | OGI:12028490 | 14/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:9913618-9913968 | ||||||||
| Gene Symbol | OGR1, ogr1 | ||||||||||
| DNA seq | atgctcagccgcgccgggagactagacgaggcagaggagctcgtcgcggcaatgccagtacaccccgacgcgctcatctggggctcgctgctcgccgcatgccgcgcgcacggcgaagttgagcgcgccgagcgggtgatgcggcggcgcaccaccgacgccgatgcggacgccggcgactacgtgctgatgtcgaacacttacgcgtcgaatggccggcacggcgaggcggtgaaggtgaggaggcagatgaggaggaacgagatcgacaaggtccccggctgcagcctcaccaagatcgacggcgtcgtcaacgaattcgaagcaatcccagcaaattccatccgataa |
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| CDS seq | atgctcagccgcgccgggagactagacgaggcagaggagctcgtcgcggcaatgccagtacaccccgacgcgctcatctggggctcgctgctcgccgcatgccgcgcgcacggcgaagttgagcgcgccgagcgggtgatgcggcggcgcaccaccgacgccgatgcggacgccggcgactacgtgctgatgtcgaacacttacgcgtcgaatggccggcacggcgaggcggtgaaggtgaggaggcagatgaggaggaacgagatcgacaaggtccccggctgcagcctcaccaagatcgacggcgtcgtcaacgaattcgaagcaatcccagcaaattccatccgataa |
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| Protein seq | MLSRAGRLDEAEELVAAMPVHPDALIWGSLLAACRAHGEVERAERVMRRRTTDADADAGDYVLMSNTYASNGRHGEAVKVRRQMRRNEIDKVPGCSLTKIDGVVNEFEAIPANSIR |
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| Function | Pentatricopeptide repeat-containing protein At5g48910 [UniProtKB/Swiss-Prot:Q9FI80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0009320 | OsPr106_12g0009320.01 | Chr12 | 9913618 | 9913968 | + | NAM | ||
| CDS seq | atgctcagccgcgccgggagactagacgaggcagaggagctcgtcgcggcaatgccagtacaccccgacgcgctcatctggggctcgctgctcgccgcatgccgcgcgcacggcgaagttgagcgcgccgagcgggtgatgcggcggcgcaccaccgacgccgatgcggacgccggcgactacgtgctgatgtcgaacacttacgcgtcgaatggccggcacggcgaggcggtgaaggtgaggaggcagatgaggaggaacgagatcgacaaggtccccggctgcagcctcaccaagatcgacggcgtcgtcaacgaattcgaagcaatcccagcaaattccatccgataa
More
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| Protein seq | MLSRAGRLDEAEELVAAMPVHPDALIWGSLLAACRAHGEVERAERVMRRRTTDADADAGDYVLMSNTYASNGRHGEAVKVRRQMRRNEIDKVPGCSLTKIDGVVNEFEAIPANSIR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.491218 | 8.795460 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0270200 | SBH | 1.098725 | 0.769711 | 1.295363 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17080 | SBH | 0.613291 | 0.499360 | 0.290388 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0270200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009490 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009680 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009620 | RBH | 0.075487 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009420 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025470 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0146900 | RBH | 0.026991 | 0.1853765 | 0.019875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009320 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0161100 | RBH | 0.351975 | 0.68399 | 2.467217 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009240 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009440 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009410 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018280 | SBH | 0.221034 | 1.039092 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009310 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009190 | RBH | 0.0 | 4.773400 | 0.0 |
