Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0007540 | OGI:12019300 | 3/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:6747491-6753915 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accacttcccaccacctcccctccttccctcgctctgctctctccatgcccaggcgagggagtccgccgcctcgcctcctcacgcgagccaccgctgtcgccgcaccatcatactgtcgtcgccatcctcctctcgctccggtcgatgcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcattgtcggtggatccggccgcccggaggcgaggggagaccggctatcaccctctctactcttctccttctacgtccggcaccgctacaacgacggccgcgcggatcgcgtgaggcaacgggtggctgctcccttctatctccactattcctttgcagatcggcggaggcctgcaacaacaacggccgcgcgggcgagcaatcgaggaggccgggaatcaccagatccggaaggacggcggcccgattcggagagggagcaacccgatctgtgtcattgaggctcattgtaagtgtcgacggcggccgttccttcacagtggtgagttccaggggggaaggccctgctcccctgccctttctttcttcactctccccctctctctgatccaaatctaaagatgatggggaggttccatgttacagatccagggtcgttgggtctgttgagctcggtatcgacggcagcagtagctcgggcaagatggaagaaacgtgttagacacggcctcctccgagagcatacaccagcgacgtgcaggaggccgaggccaaagccgatcttccccaaccccatctggcattataacttgtaagtttttgttctttttggtgttcttggtagaccgatgaaaatggtgatggtctatcgtgcaaattgatgaaggtagggatgatatgatgtgtatattgagtatgaatgcatatgcacttttgcgtgtgtagatgtaatacatgttcttgagcactttacaggttttgtggtggtgtttattactgactgacaaaaatctgagatgcatgttcggttatttacagtgatacacatgaatgcggatagatagaatgctattgtttttctcttctatgagacctcttaagtactaatctattgaattgtttgatactatatcatattgcatatgtattcatctattttgattcaaagatatacgagatcccaacaacgcatccactatcgaccaggtacaaaagcttgatttgttgaatgcttgcttccagcaatgtatcatgctctctatttccattggtgatgtgtagggattgggagcagattcattcgcaggtcagcaagctagctgaaaattaggtgagaggcgacagttggtagcgagaaggtcagcctgatggtgcagaactctggcttgaggaagacatgcttcagtgtttctccatgcaccgacaacactatcatcctgccaccacaacacacaaatctggcgatgcttccacctgcatctgcatgcccctggctccctgcatacaagtatagtccagccgctctacaagattgtctgagaaaaaatagaagaggtgcttttcttgagtatctattgatacttgctatctgttgttgacattgcaggaaaaaagagtattcttttcctgtctcggtaatgcacttggctaagaaagttggtgggcagtaagctgctcatgcttcttgatcaccaagttgctcatgctccttgatcagaacataaatagttagtaataaaattgtattgtccctccatacatctattagaattgtttccccccattttcccatggctgtatgggtttgggtttagggtcgcctctaaagcattgactggtggtgattgaaacaaattccacgttgcacattcctttagttattttttggatcaaatcacttttctagaacaaatcattttacctttgattatactccaccccacttctcacatctcaccacattgtatttctgtgagcaagcatatataaaccatgtatacaaccatacctttgacgtgtagtttcttatctgtaggttaattaaagatgcacatgagaaaggctcgattatgcctggtgttatggtgctgaattgctgatcaaaaaaaccggtggtaatgttgtaccgttttggtattggttgatatttcacaaaggttgcaggcctcttgctattgacaggtgaaaactaggatctcgactcttaagaaattgttagaaactagaaacttaaatgcctcattcaggtttttctgtgataaatacttttctattggtgcagatgagtgagcaaacatggatggtgatggtattctgacatctcaatgtgaaccagtcaaccaggtcggtattctattgcatcctttttccccttacattgtctactcgatatattgtcatggttgacgatttttgatactttagattgctgattttcagtgcagagttgatcgctaatccatgtcatggactctaaaagcaaatggtaagcttcgtgtgatgcttgctttggtagatggagctgagttcttcagtaatagatgtgttcatggccttcaggtgaagtatttctagaactaattgcactgctgcatgttaatattaccctaaatttctgaactacagctctctgtcatttgaggaaccgaaattcaggcattgctatatattacatgtgattaactgagtcattttttctgccatatatgatatattcatatcaagaattttatagccttaaattttctcttacccacgcaatatagattcggtttagcccatgtatgactatgatttgaagactgcaaatcgagaagtgaagcctttggccaaataagacagaacttgactattcactaaactttcattttgtttgatttattttgcaggattttatggcaggaaagctcccataagcttcttgggaggtgcctacttgaatgactgggagaaccatctaacaacaatatttcattaggttcacccttttagtttggatagcatgatcgttgtggcattttagcttaatgtaataactatttgttctgtattccacctgcaggttagactgcagcagtaatgaaaagtgctgatgatggatcatttaggatattgtgtgctttgccagcgtttcaggtttgtttgtttactttgcaatttgtgctgctggttgtggactgcactgtgcaatctttgatcaatagtaagtgtagaaagtatgaacatggtactgtagtaattattagtatcttccatgttttttggtagaatttgaaccagtcctgtagaatagggcatacctacaggttgggttattatatgatgggggatacataccaaatgttttggatgacctcatttggatgaatgaagaaagagaaatgcttaagcgaaattatctcatgttatttgggctctctgtccttccaagtaatgttatatgctgttgatgttatttatgtttgtccctacaaccatataggtttaacagaactatatcattgtttttttgtcagaatctggaaagtaatttaggcttgaaagttacgaaattctactagagtcgccttggtctcagtctttagtttgatcaagtttcagtaactgttttgagcacattcttcttagatggatatgcgagcaatttagcttaacatcttcagtagctagcgaaagttagaatttgtttctcccgacagtcggtatttgtttgatacatctgctatgctaatttcctactttctaaatgttgctttgattttgacttctccatcttaattgatttcgaaatgctttcacaaggtccggatgcggcatccacgtgggcaggccgttaccatgaagatcatgccatcggattagttgtccatgtgcatagatcaaagaaaaaaagaaggtacagatggcaagtatatactgaagatctatatctgtggcctactacagctcaactgttgtaaacaatacctgtgatgcatcgttcttccaaagtttcatagatggcctttgcattaaatagtatatccatatctttttttagtgaatagtacttgcaattttgagtgtgtgctttccatctcataaggtttccatgtttcataatgccctcttgagtttaatttgagttttcaactattggaggaactataaatagcactagctaaatatgttgcacacgtgattcatgtattcagctcctttactaccatatataagtttttggcacattggatctatgattttgccacagcagggttaaaatcaaattgctctgagagaattggaccttggatttggatatccatccagccaggtcaatagtatgtgactcttaggctccaaaaaataattggcggtgatagaacttagattatgtcaaaaaatgacgaacttgtacatttttaatttttcactgtaagtagttgaaggtgttttctattttttttcttcgcttcatcattcaaaaggtgtaatttcttcagtattaccatgttttttttagtgttcgctattaccatgttgacatgagtactttgtaacatggcaagttgagagttgaatttcacaattgagagttgcttacatttgtaatagttttagtaattttggaatgaacgtgcagcttggaatgtataatgttttttggtttgaaatgccaaatatatatgtatattggtttattaaaaaaacttcaattccatttgcacactctagatatttgcgacgcttcagttatgtataattttagccttgcgtgaatctttttgatagattgctggagctaaagcacaagctttaccctttttttcgaataagctagaaatagcgtaaaaaggttagtgttagaggtttacatatgttttgacttgttattcttgtagaattgttagtcttctaccataatgcaaattcttgtagttgcgtgtcttttttcatgatttaacctgctacacgaacgtatcaatgaaaaactcacatcttctgatgccactggcgcggcgcgcaaagtgcgcgttcacctctagttatatataattttgagatactggtcaccaccgacgccgtcttcaccataggtactgcttcatttcttctgctccctccttcctcttctcttttttattctgaactttatacaatctttcatgtggtagctaggtcttttatctatactttccctgcatcttattgttcttgttctgaactaatatatctggattggtgagaggtgaatggtgtccagttgttttcaaggattttttttttgagtcccactccggtgcttctacttgtagtagagagtaatctacaccgttgattgtatttgattgaatggttgagatttagggcctgtttggtacaacttcaactcctaaatttaactccaggagttgggtctggagtggagttgtggagctgcctaaacccagctccacaactctagttcattttgtgagagagctccacctagctccactcccagttttggtggagctaaaattgtttggctgagctccaactccaggaggggtggagctggagctgtgccaaacaggcccttacttctactccaacacacctaatgggagtaaaaatgtggagggataattttgtccatgaaaaatgttgtgcggagtggtaaaatggtaattttccaattgctaaccctagcagggtcgaaatggattggcctcgcgccggtcatcctccctcgtcgcctcagccgccgccccccttcttgccgcctccaccaccctccgccgcctccaacgcctgccccgccctccccgactctgcgcccgtccccctctcgccgcctccgtcgcctacctcgtcgcctccacgcccgtccccttctctcgccgtctccatggtcatgcgggtgttccgaccagagcccatcgatgagacaccggagcatgcccgcgttctcaccgccgcaaactcacccaacagcatcaggtaccatcttctcgcccccattttcacttgttcatctgctacttcagtttaatcacaaaataagactgttgcaagactgttgctgttgcctgttgtcggtctggtggtgcagagcttgatttttggggggatggggctccatgagcctgctatgagtgaagccatcgtccaatgatctctaatgaattttcattagtattccccacaaaaaattgaggtgtttgttccgtcagtgtcctacctagatagtgtttgttgttttccgtacacgcatggggatgtggctccgctatatcagttacgccagcatgaccttttggtgtgtatgcctgaacagtttgtggggcttcgtttttggatcctagcttgcacttaatttgcttttaaacatttgacccccacctaaatgtgagcagatagatatccataatcgaatggaggagttaaaattagtaaagaaatttagtattgaaagtattcgttttta
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| CDS seq | ccacttcccaccacctcccctccttccctcgctctgctctctccatgcccaggcgagggagtccgccgcctcgcctcctcacgcgagccaccgctgtcgccgcaccatcatactgtcgtcgccatcctcctctcgctccggtcgatgcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcattgtcggtggatccggccgcccggaggcgaggggagaccggctatcaccctctctactcttctccttctacgtccggcaccgctacaacgacggccgcgcggatc |
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| Protein seq | PLPTTSPPSLALLSPCPGEGVRRLASSREPPLSPHHHTVVAILLSLRSMHPPTRRPGPSDPVTPASLSVDPAARRRGETGYHPLYSSPSTSGTATTTAARI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0007540 | OsPr106_12g0007540.01 | Chr12 | 6747681 | 6753915 | + | NAM | ||
| CDS seq | atggatggtgatggtattctgacatctcaatgtgaaccagtcaaccagatggagctgagttcttcagtaatagatgtgttcatggccttcaggattttatggcaggaaagctcccataagcttcttgggaggttagactgcagcagtaatgaaaagtgctga |
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| Protein seq | MDGDGILTSQCEPVNQMELSSSVIDVFMAFRILWQESSHKLLGRLDCSSNEKC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0007540 | OsPr106_12g0007540.02 | Chr12 | 6747491 | 6751701 | + | IsoSeq | ||
| CDS seq | ccacttcccaccacctcccctccttccctcgctctgctctctccatgcccaggcgagggagtccgccgcctcgcctcctcacgcgagccaccgctgtcgccgcaccatcatactgtcgtcgccatcctcctctcgctccggtcgatgcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcattgtcggtggatccggccgcccggaggcgaggggagaccggctatcaccctctctactcttctccttctacgtccggcaccgctacaacgacggccgcgcggatc
More
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| Protein seq | PLPTTSPPSLALLSPCPGEGVRRLASSREPPLSPHHHTVVAILLSLRSMHPPTRRPGPSDPVTPASLSVDPAARRRGETGYHPLYSSPSTSGTATTTAARI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 6749810 | 6749983 | + | OsPr106_12g0007540.02 | OsPr106_12g0007540.01,OsPr106_12g0007540.02 | All |
| A5 | Chr12 | 6750394 | 6750529 | + | OsPr106_12g0007540.02 | OsPr106_12g0007540.01,OsPr106_12g0007540.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.935178 | 50.098869 | 72.432678 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0012331 | RBH | 1.577249 | 0.0 | 1.798276 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007441 | RBH | 1.025072 | 9.761168 | 9.873071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
