Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0012331 | OGI:12019300 | 3/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:17692809-17696825 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaaagcacacactcaaaattgcaagtactattcactaaaaaaagatatggatatactatttaatgcaaaggccatctatgaaactttggaagaacgatgcatcacaggtattgtttacaacagttgagctgtagtagaccacagatatagatcttcagtatatacttgccatctgtaccttctttttttctttgatctatgcacatggacaactaatccgatggcatgatcttcatggtaacggcctgcccacgtggatgccgcatccggaccttgtgaaagcatttcgaaatcaattaagatggagaagtcaaaatcaaagcaacatttagaaagtaggaaattagcatagcagatgtatcaaacaaataccgactgtcgggagaaacaaattctaactttcgctagctactgaagatgttaagctaaattgctcgcatatccatctaagaagaatgtgctcaaaacagttactgaaacttgatcaaactaaagactgagaccaaggcgactctagtagaatttcgtaactttcaagcctaaattactttccagattctgacaaaaaaacaatgatatagttctgttaaacctatatggttgtagggacaaacataaataacatcaacagcatataacattacttggagggacagagagcccaaataacatgagataatttcgcttaagcatttctctttcttcattcatccaaatgaggtcatccaaaatatttggtatgtatcccccatcatataataacccaacctgtaggtatgccctattctaaaagactggttcaaattctaccaaaaaaacatggaagatactaataattactacagtaccatgttcatactttctacacttactattgatcaaagattgcacagtgcagtccacaaccagcagcacaaattgcaaagtaaacaaacaaacctgaaacgctggcaaagcacacaatatcctaaatgatccatcatcagcacctttcattactgctgcagtctaacctgcaggtggaatacagaagaacaaatagttattacattaagctaaaatgccacaacgatcatgctatccaaactaaaagggtgaacctaatgaaatattgttgttagatggttctcccagtcattcaagtaggcacctcccaagaagcttatgggagctttcctgccataaaatcctgcaaaataaatcaaacaaaatgaaagtttagtgaatagtcaagttctgtcttatttggccaaaggcttcacttctcgatttgcagtcttcaaatcatagtcatacatgggctaaaccgaatctatattgcgtgggtaagagaaaatttaaggctataaaattcttgatatgaatatatcacatatggcagaaaaaatgactcagttaatcacatgtaatatatagcaatgcctgaaTtttggttcctcaaatgacacagagttgtagttcagaaatttagggtaatattaacatgcagcagtgcaattagttctagaaatacttcacctgaaggccatgaacacatctattactgaagaactcagctccatctaccaaagcaagcatcacaccaagcttaccatttgcttttagagtccatgacatggattagcgatcaactctgtactgaaaatcagcaatctaaagtatcaaaaatcgtcaaccatgacaatatatcgagtagacaatgtaaggggaaaaaggatgcaatagaataccgacctggttgactggttcacattgagatgtcagaataccatcaccatccatgtttgctcactcatctgcaccaatagaaaagtatttatcacagaaaaacctgaatgaggcatttaagtttctagtttctaacaatttcttagagtcgagatcctagttttcacctgtcaatagcaagaggcctgcaacctttgtgaaatatcaaccaataccaaaacggtacaacattaccaccggtttttttgatcagcaattcagcaccataacaccaggcataatcgagcctttctcatgtgcatctttaattaacctacagataagaaactacacgtcaaaggtatggttgtatacatggtttatatatgcttgctcacagaaatacaatgtggtgagatgtgagaagtggggtggagtataatcaaaggtaaaatgatttgttctagaaaagtgatttgatccaaaaaataactaaaggaatgtgcaacgtggaattagtttcaatcaccaccagtcaatgctttagaggcgaccctaaacccaaacccatacagccatgggaaaatggggggaaacaattctaatagatgtatggagggacaatacaattttattactaaccatttatgttctgatcaaggagcatgagcaacttggtgatcaagaagcatgagcagcttactgcccaccaactttcttagccaagtgcattaccgagacaggaaaagaatactcttttttcctgcaatgtcaacaacagatagcaagtatcaatagatactcaagaaaagcacctcttctatttttctcagacaatcttgtagagcggctggactatacttgtatgcagggagccaggggcatgcagatgcaggtggaagcatcgccagatttgtgtgttgtggtggcaggatgatagtgttgtcggtgcatggagaaacactgaagcatgtcttcctcaagccagagttctgcaccatcaggctgaccttctcgctaccaactgtcgcctctcaccaaattttcagctagcttgctgacctgcgaatgaatctgctcccaatccctacacatcaccaatggaaatagagagcatgatacattgctggaagcaagcattcaacaaatcaagcttttgtacctggtcgatagtggatgcgttgttgggatctcgtatatctttgaatcaaaatagatgaatacatatgcaatatgatatagtatcaaacaattcaatagattagtacttaagaggtctcatagaagagaaaaacaatagcattctatctatccgcattcatgtgtatcactgtaaataacttaacatgcatctcagatttttgtcagtcagtaataaacaccaccacaaaacctgtaaagtgctcaagaacatgtattacatctacacacgcaaaagtgcatatgcattcatactcaatatacacatcatatcatccctaccttcatcaatttgcacgatagaccatcaccattttcatcggtctaccaagaacaccaaaaagaacaaaaacttacaagttataatgccagatggggttggggaagatcggctttggcctcggcctcctgcacgtcgctggtgtatgctctcggaggaggccgtgtctaacacgtttcttccatcttgcccgagctactgctgccgtcgataccgagctcaacagacccaacgaccctggatctgtaacatggaacctccccatcatctttagatttggatcagagagagggggagagtgaagaaagaaagggcaggggagcagggccttcccccctggaactcaccactgtgaaggaacggccgccgtcgacacttacaatgagcctcaatgacacagatcgggttgctccctctccgaatcgggccgccgtccttccggatctggtgattcccggcctcctcgattgctcgcccgcgcggccgttgttgttgcaggcctccgccgatctgcaaaggaatagtggagatagaagggagaagagaagggagcagccacccgttgcctcacgcgatccgcgcggccgtcgttgtagcggtgccggacgtagaaggagaagagtagagagggtgatagccggtctcccctcgcctccgggcggccggatccaccgacaatgaggccggggtcaccggatccgacggtcccggcctcctcgttggcggatgcatcgaccggagcgagaggaggatggcgacgacagtatgatggtgcggcgacagcggtggctcgcgtgaggaggcgaggcgggcctgggcatggagagag
More
|
||||||||||
| CDS seq | tctctccatgcccaggcccgcctcgcctcctcacgcgagccaccgctgtcgccgcaccatcatactgtcgtcgccatcctcctctcgctccggtcgatgcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcattgtcggtggatccggccgcccggaggcgaggggagaccggctatcaccctctctactcttctccttctacgtccggcaccgctacaacgacggccgcgcggatc |
||||||||||
| Protein seq | SLHAQARLASSREPPLSPHHHTVVAILLSLRSMHPPTRRPGPSDPVTPASLSVDPAARRRGETGYHPLYSSPSTSGTATTTAARI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0012331 | OsLiXu_09g0012331.01 | Chr09 | 17692809 | 17696825 | - | IsoSeq | ||
| CDS seq | tctctccatgcccaggcccgcctcgcctcctcacgcgagccaccgctgtcgccgcaccatcatactgtcgtcgccatcctcctctcgctccggtcgatgcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcattgtcggtggatccggccgcccggaggcgaggggagaccggctatcaccctctctactcttctccttctacgtccggcaccgctacaacgacggccgcgcggatc
More
|
|||||||
| Protein seq | SLHAQARLASSREPPLSPHHHTVVAILLSLRSMHPPTRRPGPSDPVTPASLSVDPAARRRGETGYHPLYSSPSTSGTATTTAARI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.577249 | 0.0 | 1.798276 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007540 | RBH | 7.935178 | 50.098869 | 72.432678 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0284500 | RBH | 9.7698515 | 67.6280175 | 96.425297 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0273700 | RBH | 11.736494 | 85.5951655 | 100.430355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007441 | RBH | 1.025072 | 9.761168 | 9.873071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
