Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0001020 | OGI:12001960 | 5/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:759927-764655 | ||||||||
| Gene Symbol | RLCK309, OsRLCK309 | ||||||||||
| DNA seq | acaccagcacacagccttttcttctcctcttcctcctcctcgagttaacggttaaggcgttggtgttggtgcctcctctccaccatcgtccatcccactcccacgcgcacacagcaaagcaaaccaaagcaaagcttcgtttccgctgccccccacaggccactggacgaggaagagcacgcagcttcgcctctaccggcggcgcatggcataggcatccccaagaatgagagcttgggcctccactacaagagagagaggcagacccaccaccatcaacaacatcaggaggaggagtagatagatgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaaggtattcttcgcttcctcggattgatttcttgggggatttcccggtgattgttttcttaaggatgctggttgttgggatgggatctcgggttggatgatctgaatttcatcaaaaaatttgatcttggtggttatttctaggtttcccctgatctcttggttggtgggttcagtggggaattgacaaaagcactgtctttcctttttgctatatatgatggcctatggcttattgggacctttggatgggtgttttggttgcaaatgttgattcttgttaggtctattccaaatcggcattttggtactttcggtttaggtttgattaaaatctaatatcaacatttgctccaaatgttcaacattgtctttctgttagttgcatatggggattctgggattttggtttacagtctacatttgctcaacatccatctttctttctttctttttctcttttttttttttttggggggggagccttatctccttaagctttctggtgtgattgctctatgatttcttttctgctgcatatcccggccaagttacgatcttactgtctttccttatcttcttggttgctgtatcagaaattctgcttcattgtgttcatcgggacaatttacaagcacttcccccaatagtgctgcaatttctgtgctctctgcttcactgaggcactgttgactttcagtttaacagaaatagaattatgatcctgcaagttggaaaaacataatcacttcttgcagtttgctgcattctttaagcaatttggagccctttttttattgcatgcaactctgcagtagatctggtctcctgatcctgtttacctcttgctgtaatcaacttgcccatgtatgtacttttttacagtatttttaggtagaataccattttataattgctaggaatcgccaacgctcgtttccagtagttctcttgttagtttgtgattatagcttccctaaatgtatttcagcaggattagctctctttcatccaaccatctctgtgaatgctgaaaattcaatatgaaaaaaaaagctttatttttatcttatatgtatgagaatttatggtaaccttaattcgtttttaccttgactattttttctttcttgttgttgaaatgtcatcttctcagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttgtgagttgccaccttgttcaatattcactatggttgctgatgtccgttatgtacatggatacacggaacgttaacaattactcatacaagaacatgatatatcttaattatgtaaattatggaaaaatatttgttgatgctaactatgtatttcacatcaatggcacatgcagcatttagttgtactcatgttaacaagtacgctagcaaataaatacaccatttcatctttcttagtctgttccctttttggaatagaaaatttctcaagaagctacaatacatggttagaatgattcattgggcttgtatcatgaaaaatgtgcaaacttgataggttgatgaaggctaaagtattaatttcattggccgaatgcatgtagactgagtcatactgttagatagcatatttcttgaaagtttacaaacagaacagtgtatctacacatgctcagaataggtgaaattctatttatttttaaaaagagaataagcaacattgtccataaaagaaacatgatgcatttaatttgatgtaagcaattttggcaattttcgggcatattattaacttggaaatccttaccttttcattcttgtcgttatgttataagaattatcaggaagtaactcatcttttgtttctttgtcagactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaagtaagaatccaactccttttcatcacttcatgatgatatcatggcggaatagtttctgtgatcacactttttaaatatatatttttctctctataatacaatcaagcaccatagctgaagttgaccatattgtggataatagtgtggataatagagtcgcaacgttgttctattaaatatcgttgatatgagcaaattgatcagcattctaaaacctggtctggtaggatttcatttcaacttgctgttcatatggggattccaaattgtccagagctttttgactgaacaaccgatttaactgttcactgctagaccctcagtaagtttaggccctcttcatatttatcattcttggaaaactttattgacatgtttttaacaagattgtccaaagtgtccagttaaccatctgaactatttgtcttgccatagctaaatgccatgattttctttgtttgtatacttaatagaatcattcgtgatagttcactaccatgcatagagtatgcgagctacccatacttatctgctaaatatcttctgtattttttcttccaaaataaatgaatactattgaatactggcatgtatgatttgaaatgtcggcacagtatttcatcgattcatttgtaggtgaagtaaattatatgccaatactgaattaatggctgactaaagattgtgctcaactatattttgttcttgtacattgtggtgaacttgtattcaagattaggaaattttctgacattgtctgtgcttttcctttttcttctcagggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgagtagcatttcttgtcaatgtcttgtttttttttcctttctcttctatgctgttgggagtatgtaaatatttttcataatagcatttatcttttatttacacttacacaggattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtactgtcctcgttttatcttttttaaattttctacatttttttctgagtagcgttgttacccttcatcaaaatgtgaccaggttatttgtcaaaaagaaaagtttaccaagtaatatgcaagtatgcagtttctgttttgcccttgcaatttcatctgatgtatatatacctattgggcaggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatgagagtgtgctgtttcagttgctcctggaataggttcagttgtacattgcaagtctaaaccgtggatggtgcgtgagtgtgcacacctgcgctgtgtgcttttgggttttttcttctttttttttggctttctccccagttttcaacctgtaaatttgctctgcatggtggtgcttgtaaggccctctaattttcacagtggtcttatgtgttgttgactgtgtttgcctgccaaaaccggcaaggtttaaccccagaaatgaaaggctgaactaagagtggttggatggttgctatgctac
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| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITKSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSVALGAAKGLACLHNAERPIIYRDFKTSNILLDSDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSPAVPACRVR |
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| Function | Probable serine/threonine-protein kinase PBL8 [UniProtKB/Swiss-Prot:Q8GXZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0001020 | OsPr106_12g0001020.01 | Chr12 | 759927 | 764655 | + | NAM | ||
| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITKSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSVALGAAKGLACLHNAERPIIYRDFKTSNILLDSDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSPAVPACRVR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0001020 | OsPr106_12g0001020.04 | Chr12 | 763531 | 764655 | + | NAM | ||
| CDS seq | atgctgttgggagattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MLLGDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSPAVPACRVR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0001020 | OsPr106_12g0001020.02 | Chr12 | 760020 | 764655 | + | NAM | ||
| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgagtag
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITKSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSVALGAAKGLACLHNAERPIIYRDFKTSNILLDSVE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0001020 | OsPr106_12g0001020.03 | Chr12 | 762420 | 764655 | + | NAM | ||
| CDS seq | atgtcttgtttttttttcctttctcttctatgctgttgggagtatgtaaatatttttcataatagcatttatcttttatttacacttacacaggattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MSCFFFLSLLCCWEYVNIFHNSIYLLFTLTQDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSPAVPACRVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 763344 | 763718 | + | OsPr106_12g0001020.02,OsPr106_12g0001020.03 | OsPr106_12g0001020.02,OsPr106_12g0001020.03,OsPr106_12g0001020.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.794240 | 32.746338 | 25.540993 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0121100 | SBH | 1.532062 | 1.550845 | 4.505443 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02830 | SBH | 0.128576 | 0.391980 | 1.721680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0121100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001340 | SBH | 0.099987 | 13.783793 | 13.542949 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001550 | SBH | 0.281947 | 4.379057 | 2.572294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001570 | SBH | 0.648200 | 6.846839 | 10.431496 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001380 | SBH | 0.061968 | 0.634425 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001450 | RBH | 3.108166 | 23.404846 | 21.478722 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0011700 | RBH | 12.6148585 | 6.508656 | 20.8429805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000990 | RBH | 0.190412 | 1.821780 | 1.745168 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0020200 | SBH | 7.8413375 | 1.8862965 | 33.15073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001390 | SBH | 0.046076 | 0.464560 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001060 | RBH | 0.574333 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001030 | RBH | 5.715541 | 28.260647 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001500 | SBH | 0.532008 | 0.0 | 3.116518 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001490 | SBH | 0.0 | 10.407032 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001440 | SBH | 0.0 | 7.446180 | 5.139292 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001870 | SBH | 0.426099 | 14.558523 | 13.426946 |
