Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0001870 | OGI:12001930 | 3/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:1329564-1334357 | ||||||||
| Gene Symbol | RLCK309, OsRLCK309 | ||||||||||
| DNA seq | gagcagagtctcttgctcccatcatctatctctgtctctttctgtcaatctcacgcacaccagcacacagccttttcttctcctcttcctcctcctcgagttaacggttaaggcgttggtgttggtgcctcctctccaccatcgtccatcccactcccacgcgcacacagcaaagcaaaccaaagcaaagcttcgtttccgctgccccccacaggccactggacgaggaagagcacgcagcttcgcctctaccggccgcgcatggcataggcatccccaagaatgagagctgggcctccactacaagagagagaggcagacccaccaccatcaacaacatcaggaggaggagtagatagatgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaaggtattcttcgcttcctcggattgatttcttGggggatttcccggtgattgttttcttaaggatgctggttgttGggatgggatctcgggttggatgatccgaatttcatcaaaaaatttgatcttggtggttatttctaggtttCccctgatctcttggttggtgggttcagtggggaattgacaaaagcactgtctttcctttttgctatatatgatggcctatggcttattgggacctttggatgggtgttttggttgcaaatgttgattcttgttaggtctattccaaatcggcattttggtactttcggtttaggtttgattaaaatctaatatcaacatttgctccaaatgttcaacattgtctttctgttagttgcatatggggattctgggattttggtttacagtctacatttgctcaacatccatctttctttcTttctttttctctttttttttttttttgggggggggggggggggagccttatctccttaagctttctggtgtgattgctctatgatttcttttctgctgcatatcccggccaagttacgatcttactgtctttccttatcttcttggttgctgtatcagaaattctgcttcattgtgttcatcgggacaatttacaagcacttcccccaatagtgctgcaatttctgtgctctctgcttcactgaggcactgttgactttcagtttaacagaaatagaattatgatcctgcaagttggaaaaacataatcacttcttgcagtttgctgcattctttaagcaatttggagccctttttttattgcatgcaactctgcagtagatctggtctcctgatcctgtttacctcttgctgtaatcaacttgcccatgtatgtacTttttttacagtatttttaggtagaataccattttataattgctaggaatcgccaacgctcgtttccagtagttctcttgttagtttgtgattatagcttccctaaatgtatttcagcaggattagctctctttcatccaaccatctctgtgaatgctgaaaattcaatatgaaaaaaaaagctttatttttatcttatatgtatgagaatttatggtaaccttaattcgtttttaccttgactattttttctttcttgttgttgaaatgtcatcttctcagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttgtgagttgccaccttgttcaatattcactatggttgctgatgtccgttatgtacatggatacacggaacgttaacaattactcatacaagaacatgatatatcttaattatgtaaattatggaaaaatatttgttgatgctaactatgtatttcacatcaatggcacatgcagcatttagttgtactcatgttaacaagtacgctagcaaataaatacaccatttcatctttcttagtctgttccctttttggaatagaaaatttctcaagaagctacaatacatggttagaatgattcattgggcttgtatcatgaaaaatgtgcaaacttgataggttgatgaaggctaaagtattaatttcattggccgaatgcatgtagactgagtcatactgttagatagcatatttcttgaaagtttacaaacagaacagtgtatctacacatgctcagaataggtgaaattctatttatttttaaaaagagaataagcaacattgtccataaaagaaacatgatgcatttaatttgatgtaagcaattttggcaattttcgggcatattattaacttggaaatccttaccttttcattcttgtcgttatgttataagaattatcaggaagtaactcatcttttgtttctttgtcagactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaagtaagaatccaactccTtttcatcacttcatgatgatatcatggcggaatagtttctgtgatcacactttttAaatatatatttttctctctataatacaatcaagcaccatagctgaagttgaccatattgtggataatagtgtggataatagagtcgcaacgttgttctattaaatatcgttgatatgagcaaattgatcagcgttctaaaacctggtctggtaggatttcatttcaacttgctgttcatatggggattccaaattgtccagagctttttgactgaacaaccgatttaactgttcactgctagaccctcagtaagtttaggccctcttcatatttatcattcttggaaaactttattgacatgtttttaacaagattgtccaaagtgtccagttaaccatctgaactatttgtcttgccatagctaaatgccatgattttcTttgtttgtatacttaatagaatcattcgtgatagttcactaccatgcatagagtatgcgagctacccatacttatctgctaaatatcttctgtattttttcttccaaaataaatgaatactattgaatactggcatgtatgatttgaaatgtcggcacagtatttcatcgattcatttgtaggtgaagtaaattatatgccaatactgaattaatggctgactaaagattgtgctcaactatattttgttcttgtacattgtggtgaacttgtattcaagattaggaaattttctgacattgtctgtgcttttcctttttcttctcagggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgagtagcatttcttgtcaatgtcttgtttttttttcctttctcttctatgctgttgggaatatgtaaatatttttcataatagcatttatcttttatttacacttacacaggattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtactgtcctcgttttatcttttttaaattttctacatttttttctgagtagcgttgttacccttcatcaaaatgtgaccaggttatttgtcaaaaagaaaagtttaccaagtaatatgcaagtatgcagtttctgttttgcccttgcaatttcatctgatgtatatatacctattgggcaggtcacttgactgctagaagtgatgtctacagcTttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgCccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatgagagtgtgctgtttcagttgctcctggaataggttcagttgtacattgcaagtctaaaccgtggatggtgcgtgagtgtgcacacctgcgctgtgtgcttttgggtttttTCttctttttttttggctttctccccagttttcaacctgtaaatttgctctgcatggtggtgcttgtaaggccctctaattttcacagtggtcttatgtgttgttgactgtgtttgccctgccaaaaccggcaaggtttaaccccagaaatgaaaggctgaactaagagtggttggatggttgctatgct
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| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgacatttatcttttatttacacttacacaggattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtcacttgactgctagaagtgatgtctacagcTttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgCccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITKSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSVALGAAKGLACLHNAERPIIYRDFKTSNILLDSVDIYLLFTLTQDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSPAVPACRVR |
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| Function | Probable serine/threonine-protein kinase PBL8 [UniProtKB/Swiss-Prot:Q8GXZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001870 | OsNaBo_12g0001870.01 | Chr12 | 1329564 | 1334357 | + | NAM | ||
| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtcacttgactgctagaagtgatgtctacagcTttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgCccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITKSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSVALGAAKGLACLHNAERPIIYRDFKTSNILLDSDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSPAVPACRVR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001870 | OsNaBo_12g0001870.02 | Chr12 | 1329606 | 1334357 | + | NAM | ||
| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcatacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaacgatgtgattgatttcacattgtttgaactcgagaccatcacaaagagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcctgggctactaggatgtcggttgcattaggggctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgacatttatcttttatttacacttacacaggattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaacacgggtgatgggaacatatggttatgctgcccctgaatacgtgatgactggtcacttgactgctagaagtgatgtctacagcTttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagtagggagcacagcttggttgactgggccctcccgaaactgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgCccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaacgacgaacagcgtccactgtagggcgattccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITKSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSVALGAAKGLACLHNAERPIIYRDFKTSNILLDSVDIYLLFTLTQDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLTTNSVHCRAIPNPKCSPAVPACRVR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001870 | OsNaBo_12g0001870.03 | Chr12 | 1329676 | 1334357 | + | IsoSeq | ||
| CDS seq | cgttggtgttggtgcctcctctccaccatcgtccatcccactcccacgcgcacacagcaaagcaaaccaaagcaaagcttcgtttccgctgccccccacaggccactggacgaggaagagcacgcagcttcgcctctaccggccgcgcatggcataggcatccccaagaatgagagctgggcctccactacaagagagagaggcagacccaccaccatcaacaacatcaggaggaggagt
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| Protein seq | RWCWCLLSTIVHPTPTRTQQSKPKQSFVSAAPHRPLDEEEHAASPLPAAHGIGIPKNESWASTTRERGRPTTINNIRRRS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 1333047 | 1333421 | + | OsNaBo_12g0001870.03 | OsNaBo_12g0001870.01,OsNaBo_12g0001870.03 | All |
| RI | Chr12 | 1333047 | 1333421 | + | OsNaBo_12g0001870.03 | OsNaBo_12g0001870.02,OsNaBo_12g0001870.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.426099 | 14.558523 | 13.426946 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0121100 | SBH | 1.532062 | 1.550845 | 4.505443 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02830 | SBH | 0.128576 | 0.391980 | 1.721680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0121100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001340 | SBH | 0.099987 | 13.783793 | 13.542949 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001550 | SBH | 0.281947 | 4.379057 | 2.572294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001570 | SBH | 0.648200 | 6.846839 | 10.431496 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001380 | SBH | 0.061968 | 0.634425 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001450 | SBH | 3.108166 | 23.404846 | 21.478722 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0011700 | SBH | 12.6148585 | 6.508656 | 20.8429805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001440 | SBH | 0.148134 | 1.217515 | 1.372021 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0019400 | SBH | 11.4159725 | 2.744852 | 35.6147575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001390 | SBH | 0.046076 | 0.464560 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001460 | SBH | 0.187752 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001450 | SBH | 0.000000 | 45.781345 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001500 | SBH | 0.532008 | 0.0 | 3.116518 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001790 | RBH | 0.185445 | 15.808799 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001710 | RBH | 0.359596 | 8.588988 | 7.449464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001430 | RBH | 0.0 | 22.798973 | 8.694711 |
