Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_10g0014850 | OGI:10056850 | 14/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr10:20162063-20164432 | ||||||||
| Gene Symbol | LTT1, OsLTT1, - | ||||||||||
| DNA seq | ttagatattaatggagttgtcatcgtgtgtcggctggcgatggacgacgacgacgtcgatctgctgctggtcttgcacttctacatcgtgttgctcgggaggcggctggcgcgtgatcccggcgtgcgtgcacagtgcccagaggcaggtgatgaggtcggcgccccatgaggccaacgccttggcatggccctgcacgtcgttggacggcgccaggtagatgacgaggtgcacccagaggcgtgccagctcgtcccacgcctcgtcggcgggcttctccctgagccggtggaacagctccacgcctgttgctgatgatggggcgatcttggcggcgatcatcttcttcctgcaccggcggctcggcgggcacgcgcggcagccgcaccgcctggacgcaagatccaggcagctcctcgtctcctcgtagcagctggacacccacgtctcttcgtcgggcagcagctcggggaggtgcaccaccagatgcacgcagtacttggacagcaccgacgcgatctggcggttgtcgccgccgccgccgccggcgggaggtcggcggcactgtttcttctcgttgtccatcgtcgtcgtctcgagcagctccgtcgccaggtgccacgccaagatggcctcggtggtggtcatctggttggaatcgatgcctgcaggaaggttgatggctccagtgctgcgattgataatgtcacatgaacacaaggcttggatgatctgcgcagtggcactcgccggcagggtaacctgggaagtccttgcaaaatgcttgtcgattggaccacaggcgtcaagaatggatacctggtagattgtcatcttgtttttggatgaagaaagtaaacaatagcgtatgtagatgaccacggaatagattttctgtagccaccgtctactgggccggtcgtaggagcacagcatgcggactatgttccaatcggagaacacaaacgaggtccagaagtcatgagcctcgatgagaatgaccgtgagcacaagcaacatggtcaaggagaggatgagggacggggaactcacaggggTTCttccccagcccatgattcggcaatataatggtgctgcatccttgttgacgattagtatgtcaactacggcaacgatgaaaaaatccaagaagataatggaggacaagaagttgatgcagaaaaggataggttgggacatcaccacaggggcagccgcttgctggtagtagttcttgaggagctcaagctccattagaagcacttggaaaggcctttggagttgatcatgggatgagttgctgcctgggctagagaagttgagtttgaggaggccgtcgagcatcatggcgcgagccatgtcggagccgacctccaccatcgggtagtgctcgaaccggcgccggagcatcttgaaaagagagaaagataggcataagtcctcaaggaaatcccctctcttgccatggaagatgtgcttgtgtttttcgcgcatctcccatattgttttcacagtgaccaagggccactccttgttggagtagtcatcgggttcggcgatacagagatgaaaatgcttctgctcgttttcgtcgcagtaggtggcttggtgttggtgtccaccgccggcgacgacgacgcgccttcccacgccgtagccgtatccaggggttgtgaccggcttcggcttcttctccttgttgtcgagcacaacaagggcgtcctcgcccatcaccacgaatttgcagctggacatgtcgttggccggcacggcgctccggccatcgccgtcgcggttgtacttgtccatgactttcgtcatgtagcccgcaataacaagagggttcctcgccgtgtggaaggagtagctggcgaacgatctgttcacagcgcttagcacgagcttcgcaaagcacaggaaccagagcacagcgaaggtgatgctcagggatttatcatctggcaatttggagcatatgaggtagccgatccacactaggtgactagtgtcgtaggcgtaatccatgagcgtgaaccttccgatccccctattgaaggaggagccatcggttggcagcagcatcccctgcaccttcttgcggatgatctcggcgaggagcatccacaggagtatgaggaggagctcggttttgctccggttttcgctctgtgaaaacgccgaggagaggagaggaacgaactggaagaaggcgaagttgagcacaaaacgcacgatccgggtaaggtcgtaccggtaaaggaacaggccaccgccggtaggcagccgcctgaaggagaggcgtagaaagccggtgatgtagatggtggagcccgtgagagccatgagcaccaccatgaacgtcagcttcat
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| CDS seq | atgaagctgacgttcatggtggtgctcatggctctcacgggctccaccatctacatcaccggctttctacgcctctccttcaggcggctgcctaccggcggtggcctgttcctttaccggtacgaccttacccggatcgtgcgttttgtgctcaacttcgccttcttccagttcgttcctctcctctcctcggcgttttcacagagcgaaaaccggagcaaaaccgagctcctcctcatactcctgtggatgctcctcgccgagatcatccgcaagaaggtgcaggggatgctgctgccaaccgatggctcctccttcaatagggggatcggaaggttcacgctcatggattacgcctacgacactagtcacctagtgtggatcggctacctcatatgctccaaattgccagatgataaatccctgagcatcaccttcgctgtgctctggttcctgtgctttgcgaagctcgtgctaagcgctgtgaacagatcgttcgccagctactccttccacacggcgaggaaccctcttgttattgcgggctacatgacgaaagtcatggacaagtacaaccgcgacggcgatggccggagcgccgtgccggccaacgacatgtccagctgcaaattcgtggtgatgggcgaggacgcccttgttgtgctcgacaacaaggagaagaagccgaagccggtcacaacccctggatacggctacggcgtgggaaggcgcgtcgtcgtcgccggcggtggacaccaacaccaagccacctactgcgacgaaaacgagcagaagcattttcatctctgtatcgccgaacccgatgactactccaacaaggagtggcccttggtcactgtgaaaacaatatgggagatgcgcgaaaaacacaagcacatcttccatggcaagagaggggatttccttgaggacttatgcctatctttctctcttttcaagatgctccggcgccggttcgagcactacccgatggtggaggtcggctccgacatggctcgcgccatgatgctcgacggcctcctcaaactcaacttctctagcccaggcagcaactcatcccatgatcaactccaaaggcctttccaagtgcttctaatggagcttgagctcctcaagaactactaccagcaagcggctgcccctgtggtgatgtcccaacctatccttttctgcatcaacttcttgtcctccattatcttcttggattttttcatcgttgccgtagttgacatactaatcgtcaacaaggatgcagcaccattatattgccgaatcatgggctggggaaGAAcccctgtgagttccccgtccctcatcctctccttgaccatgttgcttgtgctcacggtcattctcatcgaggctcatgacttctggacctcgtttgtgttctccgattggaacatagtccgcatgctgtgctcctacgaccggcccagtagacggtggctacagaaaatctattccgtggtcatctacatacgctattgtttactttcttcatccaaaaacaagatgacaatctaccaggtatccattcttgacgcctgtggtccaatcgacaagcattttgcaaggacttcccaggttaccctgccggcgagtgccactgcgcagatcatccaagccttgtgttcatgtgacattatcaatcgcagcactggagccatcaaccttcctgcaggcatcgattccaaccagatgaccaccaccgaggccatcttggcgtggcacctggcgacggagctgctcgagacgacgacgatggacaacgagaagaaacagtgccgccgacctcccgccggcggcggcggcggcgacaaccgccagatcgcgtcggtgctgtccaagtactgcgtgcatctggtggtgcacctccccgagctgctgcccgacgaagagacgtgggtgtccagctgctacgaggagacgaggagctgcctggatcttgcgtccaggcggtgcggctgccgcgcgtgcccgccgagccgccggtgcaggaagaagatgatcgccgccaagatcgccccatcatcagcaacaggcgtggagctgttccaccggctcagggagaagcccgccgacgaggcgtgggacgagctggcacgcctctgggtgcacctcgtcatctacctggcgccgtccaacgacgtgcagggccatgccaaggcgttggcctcatggggcgccgacctcatcacctgcctctgggcactgtgcacgcacgccgggatcacgcgccagccgcctcccgagcaacacgatgtagaagtgcaagaccagcagcagatcgacgtcgtcgtcgtccatcgccagccgacacacgatgacaactccattaatatctaa
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| Protein seq | MKLTFMVVLMALTGSTIYITGFLRLSFRRLPTGGGLFLYRYDLTRIVRFVLNFAFFQFVPLLSSAFSQSENRSKTELLLILLWMLLAEIIRKKVQGMLLPTDGSSFNRGIGRFTLMDYAYDTSHLVWIGYLICSKLPDDKSLSITFAVLWFLCFAKLVLSAVNRSFASYSFHTARNPLVIAGYMTKVMDKYNRDGDGRSAVPANDMSSCKFVVMGEDALVVLDNKEKKPKPVTTPGYGYGVGRRVVVAGGGHQHQATYCDENEQKHFHLCIAEPDDYSNKEWPLVTVKTIWEMREKHKHIFHGKRGDFLEDLCLSFSLFKMLRRRFEHYPMVEVGSDMARAMMLDGLLKLNFSSPGSNSSHDQLQRPFQVLLMELELLKNYYQQAAAPVVMSQPILFCINFLSSIIFLDFFIVAVVDILIVNKDAAPLYCRIMGWGRTPVSSPSLILSLTMLLVLTVILIEAHDFWTSFVFSDWNIVRMLCSYDRPSRRWLQKIYSVVIYIRYCLLSSSKNKMTIYQVSILDACGPIDKHFARTSQVTLPASATAQIIQALCSCDIINRSTGAINLPAGIDSNQMTTTEAILAWHLATELLETTTMDNEKKQCRRPPAGGGGGDNRQIASVLSKYCVHLVVHLPELLPDEETWVSSCYEETRSCLDLASRRCGCRACPPSRRCRKKMIAAKIAPSSATGVELFHRLREKPADEAWDELARLWVHLVIYLAPSNDVQGHAKALASWGADLITCLWALCTHAGITRQPPPEQHDVEVQDQQQIDVVVVHRQPTHDDNSINI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0014850 | OsPr106_10g0014850.01 | Chr10 | 20162063 | 20164432 | - | NAM | ||
| CDS seq | atgaagctgacgttcatggtggtgctcatggctctcacgggctccaccatctacatcaccggctttctacgcctctccttcaggcggctgcctaccggcggtggcctgttcctttaccggtacgaccttacccggatcgtgcgttttgtgctcaacttcgccttcttccagttcgttcctctcctctcctcggcgttttcacagagcgaaaaccggagcaaaaccgagctcctcctcatactcctgtggatgctcctcgccgagatcatccgcaagaaggtgcaggggatgctgctgccaaccgatggctcctccttcaatagggggatcggaaggttcacgctcatggattacgcctacgacactagtcacctagtgtggatcggctacctcatatgctccaaattgccagatgataaatccctgagcatcaccttcgctgtgctctggttcctgtgctttgcgaagctcgtgctaagcgctgtgaacagatcgttcgccagctactccttccacacggcgaggaaccctcttgttattgcgggctacatgacgaaagtcatggacaagtacaaccgcgacggcgatggccggagcgccgtgccggccaacgacatgtccagctgcaaattcgtggtgatgggcgaggacgcccttgttgtgctcgacaacaaggagaagaagccgaagccggtcacaacccctggatacggctacggcgtgggaaggcgcgtcgtcgtcgccggcggtggacaccaacaccaagccacctactgcgacgaaaacgagcagaagcattttcatctctgtatcgccgaacccgatgactactccaacaaggagtggcccttggtcactgtgaaaacaatatgggagatgcgcgaaaaacacaagcacatcttccatggcaagagaggggatttccttgaggacttatgcctatctttctctcttttcaagatgctccggcgccggttcgagcactacccgatggtggaggtcggctccgacatggctcgcgccatgatgctcgacggcctcctcaaactcaacttctctagcccaggcagcaactcatcccatgatcaactccaaaggcctttccaagtgcttctaatggagcttgagctcctcaagaactactaccagcaagcggctgcccctgtggtgatgtcccaacctatccttttctgcatcaacttcttgtcctccattatcttcttggattttttcatcgttgccgtagttgacatactaatcgtcaacaaggatgcagcaccattatattgccgaatcatgggctggggaaGAAcccctgtgagttccccgtccctcatcctctccttgaccatgttgcttgtgctcacggtcattctcatcgaggctcatgacttctggacctcgtttgtgttctccgattggaacatagtccgcatgctgtgctcctacgaccggcccagtagacggtggctacagaaaatctattccgtggtcatctacatacgctattgtttactttcttcatccaaaaacaagatgacaatctaccaggtatccattcttgacgcctgtggtccaatcgacaagcattttgcaaggacttcccaggttaccctgccggcgagtgccactgcgcagatcatccaagccttgtgttcatgtgacattatcaatcgcagcactggagccatcaaccttcctgcaggcatcgattccaaccagatgaccaccaccgaggccatcttggcgtggcacctggcgacggagctgctcgagacgacgacgatggacaacgagaagaaacagtgccgccgacctcccgccggcggcggcggcggcgacaaccgccagatcgcgtcggtgctgtccaagtactgcgtgcatctggtggtgcacctccccgagctgctgcccgacgaagagacgtgggtgtccagctgctacgaggagacgaggagctgcctggatcttgcgtccaggcggtgcggctgccgcgcgtgcccgccgagccgccggtgcaggaagaagatgatcgccgccaagatcgccccatcatcagcaacaggcgtggagctgttccaccggctcagggagaagcccgccgacgaggcgtgggacgagctggcacgcctctgggtgcacctcgtcatctacctggcgccgtccaacgacgtgcagggccatgccaaggcgttggcctcatggggcgccgacctcatcacctgcctctgggcactgtgcacgcacgccgggatcacgcgccagccgcctcccgagcaacacgatgtagaagtgcaagaccagcagcagatcgacgtcgtcgtcgtccatcgccagccgacacacgatgacaactccattaatatctaa
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| Protein seq | MKLTFMVVLMALTGSTIYITGFLRLSFRRLPTGGGLFLYRYDLTRIVRFVLNFAFFQFVPLLSSAFSQSENRSKTELLLILLWMLLAEIIRKKVQGMLLPTDGSSFNRGIGRFTLMDYAYDTSHLVWIGYLICSKLPDDKSLSITFAVLWFLCFAKLVLSAVNRSFASYSFHTARNPLVIAGYMTKVMDKYNRDGDGRSAVPANDMSSCKFVVMGEDALVVLDNKEKKPKPVTTPGYGYGVGRRVVVAGGGHQHQATYCDENEQKHFHLCIAEPDDYSNKEWPLVTVKTIWEMREKHKHIFHGKRGDFLEDLCLSFSLFKMLRRRFEHYPMVEVGSDMARAMMLDGLLKLNFSSPGSNSSHDQLQRPFQVLLMELELLKNYYQQAAAPVVMSQPILFCINFLSSIIFLDFFIVAVVDILIVNKDAAPLYCRIMGWGRTPVSSPSLILSLTMLLVLTVILIEAHDFWTSFVFSDWNIVRMLCSYDRPSRRWLQKIYSVVIYIRYCLLSSSKNKMTIYQVSILDACGPIDKHFARTSQVTLPASATAQIIQALCSCDIINRSTGAINLPAGIDSNQMTTTEAILAWHLATELLETTTMDNEKKQCRRPPAGGGGGDNRQIASVLSKYCVHLVVHLPELLPDEETWVSSCYEETRSCLDLASRRCGCRACPPSRRCRKKMIAAKIAPSSATGVELFHRLREKPADEAWDELARLWVHLVIYLAPSNDVQGHAKALASWGADLITCLWALCTHAGITRQPPPEQHDVEVQDQQQIDVVVVHRQPTHDDNSINI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0450400 | SBH | 0.0 | 0.000000 | 0.196223 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0482200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0014880 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014570 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014870 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0299000 | RBH | 0.146548 | 0 | 0.0104805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014780 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0322900 | SBH | 0.077537 | 0.046056 | 0.0016175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014770 | RBH | 0.0 | 0.0 | 0.0 |
