Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0482200 | OGI:10056990 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:18203248-18205758 | ||||||||
| Gene Symbol | LTT1, OsLTT1 | ||||||||||
| DNA seq | CTAGACATTGCTGTCGTCGACGGTGAGCTCGGCCGCCTGCTCGGAAGGCTGGCGCGTGATCCCGGCGTGCGTGCACAGCGTCCAGAGGCAGGTGAGGAGGTCGCCGCTGCCCCAGGAGGCCAGCGCCTTGGCGTGGCCCTGCACGTCGTTGGACGGCGCGAGGTAGACGACGAGGTGCACCCAGAAGCGCGCCAGCTCGTCCCACGCCTTGTCGAACGCCGGGCCCCGCCGCCGGAGCCGGTGGAACAGCCTGGCGCCGCGCCGCGCCGCCGGGTCGTCGTCGAACAGCTCCTCCCACCGGCTCGATCGGACGGCCACGGCTATCGCCTTCTTCCTCCTCCGGCTCGTCGGGCAGACGACCCGCCTGGACGCGAGGTGCAGGGCGCTCGCCGTGTCGCCGTACCTGTCGGACACCCACGTCTCGTCGTCGGGGAGCAGCTCCGGGATCTGCGCCACCAGGAACATGCAGTACCTCGACAACACCGACGCGATCTTGCGGTCGTCTTCTTTCTTCTCCTTCTTCTTCTTCTGCTGCTGCTGGTCGTCGTCGTTTTCGTCGGCGGCGGGGGGAGGGTGGTCGTCGTGTTCGTTGTCGAGAAGCTCCGTGGCGAGGTGGCACGCCAGGATGATCTCGGTGGTGGTCATGGTGCGGAAGTCGAGGCCATCGATGTCGGGGAGGCTGACGATCCCGGTGGTGCGGCTGACGACGGCGTCAGAACGCAAGGCGTCGATGATCCGTCCGGTGGCGATCGCCGGCAGCGCGACGTCGGCCGCCCTCACAGTTGCGTAGAGTTTTTGGAGTGGAGAGGCGGCGTCGAAGATGGACATCTGGTAGATGACCATCTCCGATTTGCCCACAGAAAACGTGAGGAACCTTACCCTGATGACAAGGAAGCAGAGCCACCGTAGCCACGGGCGATGGGCAGCACGGTGATAGGTGCAGACCATGCGAACAATGTTCCAGCTGGAGAACACATGCACGGTCCAGAACTCGTGGGTTTCAATGGCGATGACCGTGAGCACGAGCAGCACGGTTATGTAGAAGTAGACGTTGGAGATGGGGCCGTTTCCGGTGGTCGTCCAGACGATGATTTGGCAATACACCGGCTCACCTTGACTTGAGATGAAAAGTATGTAGACGACGGTGCCGAGCAGTAGACACAGGAGGAAGAGGGAGGAGACGAAGTTGACGACGAAAAGGATAGGTTGGGACATTACCACTGGGGCAGCCGCCTGCTGGTAGTAGTGCACCAAGAGATCAAGCTCAAGCTGGAGCACCTGGAAACCCCTCTGGATTTGACCTTGTACTCGGTTCAGCGTGAACTTGCTGCAGAGTTTCTGGGCTTTGCCCACAGGCTCACATCCCTCGAGCTTGAGGACGCCGTCGAGCATGACGCCGCGAGCCATGGCGGAGCCGACCTCCACCATCGGGTAGTGCTCGAAGCGGCGCCGGAACATCTTGAAGAGGGAGAAGGAGATGCACAGGTCCTCGAGGAGCTGACGCCTCCTGCCTTTGAACAGGTTGGCGTGCTGCTCGTGCATGTTCATCACGTCTTCCACGGTGATCAGCCGCCCCTTCTCCACGCAGTCGTGCTCCGTCAGGCGGAGATACTCGTCGGGGTCGGTGAGGAGGAGATGCACATGCTTGTGCTCGTTCTGGTCGCCGCCGACGCGCCTTGCCACGCCGTAGCCGTATCCATGGATCGTGACCGGCTCGAGCACCCCATTATCCCTCCTCCTCATTCTCCTCTTCCTCTTGTTGTTGTTGTTGTCGTCATCGTTGTTCACCTTGTTGTAGTGGAGGACAAGTCGATCCTCGCCCATGACAACGAATTTGCAGGTGGACAAGGTGATGGCGGGGGGGCTTGTGGCCGTCTGCTTCTCCATGAGTTTCTGCATGTAAGCTGCAACGACAAGAGGGTTCCTCGCCGTGTGCAAGGAGCAGCTCGCGAGCCTCCTGTTCAACAGGCTCAGCACCAGCTTCGCCAAGCACAGCGACCAGAGCACAGTGAAGATGTAGATCAACGTCAACCCTAACAAATAGTATCGGAATTCTAACGTCTCCGTCCTCGTCTGCCTCGCCAAGTTTGCGAAGATGAGGTAGCCGACCCACACCAGGTGGCTCACCTCGTAGGAGACATCCATGAGCGTGAGCCTCCCGATGCCCCTCGAGAAGGAGGAGCCGTCGGTCGGCAGCAGCATCCCCTGGACCTTCTTGCGGATGAGCTCCACGAGGATCAACCACAGGAGCGCCGCCAGGAGCTCCGATTCGTTCCGGAGGACGCCGTCGTTGTTGCCGCCGCTGTTGGCCTGGCTCTGGGAGATGGTCGCCGAGACGAGAGGGACAAACTGGAAGAAGGCGAAGTTGAGCAGGAAGCGCGCGATGATGGAGAGGCTGTACTTCTGGAACCCGATCTGGCGCACCCACGGGAAGAAGACCTGCACGAAGCCGTTGATGTAGAGCGTGCAGCCCACGATCGCCATGAGCACCACCATGAACAGCAGCTTCAT
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| CDS seq | ATGAAGCTGCTGTTCATGGTGGTGCTCATGGCGATCGTGGGCTGCACGCTCTACATCAACGGCTTCGTGCAGGTCTTCTTCCCGTGGGTGCGCCAGATCGGGTTCCAGAAGTACAGCCTCTCCATCATCGCGCGCTTCCTGCTCAACTTCGCCTTCTTCCAGTTTGTCCCTCTCGTCTCGGCGACCATCTCCCAGAGCCAGGCCAACAGCGGCGGCAACAACGACGGCGTCCTCCGGAACGAATCGGAGCTCCTGGCGGCGCTCCTGTGGTTGATCCTCGTGGAGCTCATCCGCAAGAAGGTCCAGGGGATGCTGCTGCCGACCGACGGCTCCTCCTTCTCGAGGGGCATCGGGAGGCTCACGCTCATGGATGTCTCCTACGAGGTGAGCCACCTGGTGTGGGTCGGCTACCTCATCTTCGCAAACTTGGCGAGGCAGACGAGGACGGAGACGTTAGAATTCCGATACTATTTGTTAGGGTTGACGTTGATCTACATCTTCACTGTGCTCTGGTCGCTGTGCTTGGCGAAGCTGGTGCTGAGCCTGTTGAACAGGAGGCTCGCGAGCTGCTCCTTGCACACGGCGAGGAACCCTCTTGTCGTTGCAGCTTACATGCAGAAACTCATGGAGAAGCAGACGGCCACAAGCCCCCCCGCCATCACCTTGTCCACCTGCAAATTCGTTGTCATGGGCGAGGATCGACTTGTCCTCCACTACAACAAGGTGAACAACGATGACGACAACAACAACAACAAGAGGAAGAGGAGAATGAGGAGGAGGGATAATGGGGTGCTCGAGCCGGTCACGATCCATGGATACGGCTACGGCGTGGCAAGGCGCGTCGGCGGCGACCAGAACGAGCACAAGCATGTGCATCTCCTCCTCACCGACCCCGACGAGTATCTCCGCCTGACGGAGCACGACTGCGTGGAGAAGGGGCGGCTGATCACCGTGGAAGACGTGATGAACATGCACGAGCAGCACGCCAACCTGTTCAAAGGCAGGAGGCGTCAGCTCCTCGAGGACCTGTGCATCTCCTTCTCCCTCTTCAAGATGTTCCGGCGCCGCTTCGAGCACTACCCGATGGTGGAGGTCGGCTCCGCCATGGCTCGCGGCGTCATGCTCGACGGCGTCCTCAAGCTCGAGGGATGTGAGCCTGTGGGCAAAGCCCAGAAACTCTGCAGCAAGTTCACGCTGAACCGAGTACAAGGTCAAATCCAGAGGGGTTTCCAGGTGCTCCAGCTTGAGCTTGATCTCTTGGTGCACTACTACCAGCAGGCGGCTGCCCCAGTGGTAATGTCCCAACCTATCCTTTTCGTCGTCAACTTCGTCTCCTCCCTCTTCCTCCTGTGTCTACTGCTCGGCACCGTCGTCTACATACTTTTCATCTCAAGTCAAGGTGAGCCGGTGTATTGCCAAATCATCGTCTGGACGACCACCGGAAACGGCCCCATCTCCAACGTCTACTTCTACATAACCGTGCTGCTCGTGCTCACGGTCATCGCCATTGAAACCCACGAGTTCTGGACCGTGCATGTGTTCTCCAGCTGGAACATTGTTCGCATGGTCTGCACCTATCACCGTGCTGCCCATCGCCCGTGGCTACGGTGGCTCTGCTTCCTTGTCATCAGGGTAAGGTTCCTCACGTTTTCTGTGGGCAAATCGGAGATGGTCATCTACCAGATGTCCATCTTCGACGCCGCCTCTCCACTCCAAAAACTCTACGCAACTGTGAGGGCGGCCGACGTCGCGCTGCCGGCGATCGCCACCGGACGGATCATCGACGCCTTGCGTTCTGACGCCGTCGTCAGCCGCACCACCGGGATCGTCAGCCTCCCCGACATCGATGGCCTCGACTTCCGCACCATGACCACCACCGAGATCATCCTGGCGTGCCACCTCGCCACGGAGCTTCTCGACAACGAACACGACGACCACCCTCCCCCCGCCGCCGACGAAAACGACGACGACCAGCAGCAGCAGAAGAAGAAGAAGGAGAAGAAAGAAGACGACCGCAAGATCGCGTCGGTGTTGTCGAGGTACTGCATGTTCCTGGTGGCGCAGATCCCGGAGCTGCTCCCCGACGACGAGACGTGGGTGTCCGACAGGTACGGCGACACGGCGAGCGCCCTGCACCTCGCGTCCAGGCGGGTCGTCTGCCCGACGAGCCGGAGGAGGAAGAAGGCGATAGCCGTGGCCGTCCGATCGAGCCGGTGGGAGGAGCTGTTCGACGACGACCCGGCGGCGCGGCGCGGCGCCAGGCTGTTCCACCGGCTCCGGCGGCGGGGCCCGGCGTTCGACAAGGCGTGGGACGAGCTGGCGCGCTTCTGGGTGCACCTCGTCGTCTACCTCGCGCCGTCCAACGACGTGCAGGGCCACGCCAAGGCGCTGGCCTCCTGGGGCAGCGGCGACCTCCTCACCTGCCTCTGGACGCTGTGCACGCACGCCGGGATCACGCGCCAGCCTTCCGAGCAGGCGGCCGAGCTCACCGTCGACGACAGCAATGTCTAG
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| Protein seq | MKLLFMVVLMAIVGCTLYINGFVQVFFPWVRQIGFQKYSLSIIARFLLNFAFFQFVPLVSATISQSQANSGGNNDGVLRNESELLAALLWLILVELIRKKVQGMLLPTDGSSFSRGIGRLTLMDVSYEVSHLVWVGYLIFANLARQTRTETLEFRYYLLGLTLIYIFTVLWSLCLAKLVLSLLNRRLASCSLHTARNPLVVAAYMQKLMEKQTATSPPAITLSTCKFVVMGEDRLVLHYNKVNNDDDNNNNKRKRRMRRRDNGVLEPVTIHGYGYGVARRVGGDQNEHKHVHLLLTDPDEYLRLTEHDCVEKGRLITVEDVMNMHEQHANLFKGRRRQLLEDLCISFSLFKMFRRRFEHYPMVEVGSAMARGVMLDGVLKLEGCEPVGKAQKLCSKFTLNRVQGQIQRGFQVLQLELDLLVHYYQQAAAPVVMSQPILFVVNFVSSLFLLCLLLGTVVYILFISSQGEPVYCQIIVWTTTGNGPISNVYFYITVLLVLTVIAIETHEFWTVHVFSSWNIVRMVCTYHRAAHRPWLRWLCFLVIRVRFLTFSVGKSEMVIYQMSIFDAASPLQKLYATVRAADVALPAIATGRIIDALRSDAVVSRTTGIVSLPDIDGLDFRTMTTTEIILACHLATELLDNEHDDHPPPAADENDDDQQQQKKKKEKKEDDRKIASVLSRYCMFLVAQIPELLPDDETWVSDRYGDTASALHLASRRVVCPTSRRRKKAIAVAVRSSRWEELFDDDPAARRGARLFHRLRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAKALASWGSGDLLTCLWTLCTHAGITRQPSEQAAELTVDDSNV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0482200 | Os10t0482200-01 | Chr10 | 18203248 | 18205758 | - | irgsp1_rep | ||
| CDS seq | ATGAAGCTGCTGTTCATGGTGGTGCTCATGGCGATCGTGGGCTGCACGCTCTACATCAACGGCTTCGTGCAGGTCTTCTTCCCGTGGGTGCGCCAGATCGGGTTCCAGAAGTACAGCCTCTCCATCATCGCGCGCTTCCTGCTCAACTTCGCCTTCTTCCAGTTTGTCCCTCTCGTCTCGGCGACCATCTCCCAGAGCCAGGCCAACAGCGGCGGCAACAACGACGGCGTCCTCCGGAACGAATCGGAGCTCCTGGCGGCGCTCCTGTGGTTGATCCTCGTGGAGCTCATCCGCAAGAAGGTCCAGGGGATGCTGCTGCCGACCGACGGCTCCTCCTTCTCGAGGGGCATCGGGAGGCTCACGCTCATGGATGTCTCCTACGAGGTGAGCCACCTGGTGTGGGTCGGCTACCTCATCTTCGCAAACTTGGCGAGGCAGACGAGGACGGAGACGTTAGAATTCCGATACTATTTGTTAGGGTTGACGTTGATCTACATCTTCACTGTGCTCTGGTCGCTGTGCTTGGCGAAGCTGGTGCTGAGCCTGTTGAACAGGAGGCTCGCGAGCTGCTCCTTGCACACGGCGAGGAACCCTCTTGTCGTTGCAGCTTACATGCAGAAACTCATGGAGAAGCAGACGGCCACAAGCCCCCCCGCCATCACCTTGTCCACCTGCAAATTCGTTGTCATGGGCGAGGATCGACTTGTCCTCCACTACAACAAGGTGAACAACGATGACGACAACAACAACAACAAGAGGAAGAGGAGAATGAGGAGGAGGGATAATGGGGTGCTCGAGCCGGTCACGATCCATGGATACGGCTACGGCGTGGCAAGGCGCGTCGGCGGCGACCAGAACGAGCACAAGCATGTGCATCTCCTCCTCACCGACCCCGACGAGTATCTCCGCCTGACGGAGCACGACTGCGTGGAGAAGGGGCGGCTGATCACCGTGGAAGACGTGATGAACATGCACGAGCAGCACGCCAACCTGTTCAAAGGCAGGAGGCGTCAGCTCCTCGAGGACCTGTGCATCTCCTTCTCCCTCTTCAAGATGTTCCGGCGCCGCTTCGAGCACTACCCGATGGTGGAGGTCGGCTCCGCCATGGCTCGCGGCGTCATGCTCGACGGCGTCCTCAAGCTCGAGGGATGTGAGCCTGTGGGCAAAGCCCAGAAACTCTGCAGCAAGTTCACGCTGAACCGAGTACAAGGTCAAATCCAGAGGGGTTTCCAGGTGCTCCAGCTTGAGCTTGATCTCTTGGTGCACTACTACCAGCAGGCGGCTGCCCCAGTGGTAATGTCCCAACCTATCCTTTTCGTCGTCAACTTCGTCTCCTCCCTCTTCCTCCTGTGTCTACTGCTCGGCACCGTCGTCTACATACTTTTCATCTCAAGTCAAGGTGAGCCGGTGTATTGCCAAATCATCGTCTGGACGACCACCGGAAACGGCCCCATCTCCAACGTCTACTTCTACATAACCGTGCTGCTCGTGCTCACGGTCATCGCCATTGAAACCCACGAGTTCTGGACCGTGCATGTGTTCTCCAGCTGGAACATTGTTCGCATGGTCTGCACCTATCACCGTGCTGCCCATCGCCCGTGGCTACGGTGGCTCTGCTTCCTTGTCATCAGGGTAAGGTTCCTCACGTTTTCTGTGGGCAAATCGGAGATGGTCATCTACCAGATGTCCATCTTCGACGCCGCCTCTCCACTCCAAAAACTCTACGCAACTGTGAGGGCGGCCGACGTCGCGCTGCCGGCGATCGCCACCGGACGGATCATCGACGCCTTGCGTTCTGACGCCGTCGTCAGCCGCACCACCGGGATCGTCAGCCTCCCCGACATCGATGGCCTCGACTTCCGCACCATGACCACCACCGAGATCATCCTGGCGTGCCACCTCGCCACGGAGCTTCTCGACAACGAACACGACGACCACCCTCCCCCCGCCGCCGACGAAAACGACGACGACCAGCAGCAGCAGAAGAAGAAGAAGGAGAAGAAAGAAGACGACCGCAAGATCGCGTCGGTGTTGTCGAGGTACTGCATGTTCCTGGTGGCGCAGATCCCGGAGCTGCTCCCCGACGACGAGACGTGGGTGTCCGACAGGTACGGCGACACGGCGAGCGCCCTGCACCTCGCGTCCAGGCGGGTCGTCTGCCCGACGAGCCGGAGGAGGAAGAAGGCGATAGCCGTGGCCGTCCGATCGAGCCGGTGGGAGGAGCTGTTCGACGACGACCCGGCGGCGCGGCGCGGCGCCAGGCTGTTCCACCGGCTCCGGCGGCGGGGCCCGGCGTTCGACAAGGCGTGGGACGAGCTGGCGCGCTTCTGGGTGCACCTCGTCGTCTACCTCGCGCCGTCCAACGACGTGCAGGGCCACGCCAAGGCGCTGGCCTCCTGGGGCAGCGGCGACCTCCTCACCTGCCTCTGGACGCTGTGCACGCACGCCGGGATCACGCGCCAGCCTTCCGAGCAGGCGGCCGAGCTCACCGTCGACGACAGCAATGTCTAG
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| Protein seq | MKLLFMVVLMAIVGCTLYINGFVQVFFPWVRQIGFQKYSLSIIARFLLNFAFFQFVPLVSATISQSQANSGGNNDGVLRNESELLAALLWLILVELIRKKVQGMLLPTDGSSFSRGIGRLTLMDVSYEVSHLVWVGYLIFANLARQTRTETLEFRYYLLGLTLIYIFTVLWSLCLAKLVLSLLNRRLASCSLHTARNPLVVAAYMQKLMEKQTATSPPAITLSTCKFVVMGEDRLVLHYNKVNNDDDNNNNKRKRRMRRRDNGVLEPVTIHGYGYGVARRVGGDQNEHKHVHLLLTDPDEYLRLTEHDCVEKGRLITVEDVMNMHEQHANLFKGRRRQLLEDLCISFSLFKMFRRRFEHYPMVEVGSAMARGVMLDGVLKLEGCEPVGKAQKLCSKFTLNRVQGQIQRGFQVLQLELDLLVHYYQQAAAPVVMSQPILFVVNFVSSLFLLCLLLGTVVYILFISSQGEPVYCQIIVWTTTGNGPISNVYFYITVLLVLTVIAIETHEFWTVHVFSSWNIVRMVCTYHRAAHRPWLRWLCFLVIRVRFLTFSVGKSEMVIYQMSIFDAASPLQKLYATVRAADVALPAIATGRIIDALRSDAVVSRTTGIVSLPDIDGLDFRTMTTTEIILACHLATELLDNEHDDHPPPAADENDDDQQQQKKKKEKKEDDRKIASVLSRYCMFLVAQIPELLPDDETWVSDRYGDTASALHLASRRVVCPTSRRRKKAIAVAVRSSRWEELFDDDPAARRGARLFHRLRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAKALASWGSGDLLTCLWTLCTHAGITRQPSEQAAELTVDDSNV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34110 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0014910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014600 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014940 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014870 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0299900 | RBH | 0.0751325 | 0.0019845 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014810 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0322900 | RBH | 0.077537 | 0.046056 | 0.0016175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014790 | RBH | 0.0 | 0.0 | 0.0 |
