Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_09g0006030 | OGI:09029000 | 14/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr09:10613812-10615311 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaattgtatgtggtatgttccaagaaacaaattcttaccagagtaatatcatctggcttggtggatgttgtcctcatcatgtcaaaaatttcaagtgcttcctttccaaaaccatgtcgtgcgtaaccagcaatcatagtattccatgaaactacatccctctcttccatttcctcgaatgcattccgagcatcctccatgttcccacatttaaagtacatagctaggagtgcattcccaacaaaacatcccaccccataaccagccctaatcaatctcccatgaagctgcattccacattcaagtgcagcaatgtcagcacatgtgctcaacacacaagcgaatgctgatctattcacccattcaccacacctccccatttcaatgaacaactgcagggtttcctcactgcaaccaccctgagaatatgcagccagcattgcagcccaggagactgcatctttttgtggcatcgtgtcaaaaactgcctttgcctcctccaacatccctgcctgagcataccctgtcaacattgtgttccatgatgccacattcctgcagggcatcatattgaacagttcctttgcttcatccatcatcctccgctgaatgtaggctgccaccattgcattccaagacaccgcattcctctctggcatggcatcaaacaccctcctggcctcctccaacattccattttgtgcatacccagacacgactgctgtccatgtgaatacatccctcactggagctgcatcaaacaaccttcttgcctccaccatatcccctcttcttgcataacccgagaccataatattccaggatacgacatccctcccaggcatcctatcaaatagctcccttgcctctgacatcttaccccactgcacataccccgacatcagtgcgttccaagagatcacatcccactctgtcctcgaattaaacaaacccctcgcttcctcaacccgtccattcctgacatacgccgcaagcatcccattccatgagacggcgtccttctcgggggcaagatcaaagtagtgccgcgcgagcgacacaagtccgtggttggcatgggacgagatcatgacgttgtaggtgaccgaatccctcacgggcatttcgtcgaacaggccgcgcgcgtcggcgagggacgaggagaccgccagcgcgtggaggagggtgttgtaggagtagttgtccggccgcgggatggcgcggaagagggacgccgccagcgggaggcggccgttggcggagtacccggcgagcatggcgttgtaggtggaggtggagcgccggggcatcgcggcgaagaggcgctcggcgtcggcgacgcggccggcgcgcatgtgcgccgtgatggccttgttgctccggatcacctccggttcgagcctccccgaggaggaagaggaggaggcgtccccggcggccggcggcggccggtggctccgctgccgcgccgcggaacggaggtggcgggaagggagcat
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| CDS seq | atgctcccttcccgccacctccgttccgcggcgcggcagcggagccaccggccgccgccggccgccggggacgcctcctcctcttcctcctcggggaggctcgaaccggaggtgatccggagcaacaaggccatcacggcgcacatgcgcgccggccgcgtcgccgacgccgagcgcctcttcgccgcgatgccccggcgctccacctccacctacaacgccatgctcgccgggtactccgccaacggccgcctcccgctggcggcgtccctcttccgcgccatcccgcggccggacaactactcctacaacaccctcctccacgcgctggcggtctcctcgtccctcgccgacgcgcgcggcctgttcgacgaaatgcccgtgagggattcggtcacctacaacgtcatgatctcgtcccatgccaaccacggacttgtgtcgctcgcgcggcactactttgatcttgcccccgagaaggacgccgtctcatggaatgggatgcttgcggcgtatgtcaggaatggacgggttgaggaagcgaggggtttgtttaattcgaggacagagtgggatgtgatctcttggaacgcactgatgtcggggtatgtgcagtggggtaagatgtcagaggcaagggagctatttgataggatgcctgggagggatgtcgtatcctggaatattatggtctcgggttatgcaagaagaggggatatggtggaggcaagaaggttgtttgatgcagctccagtgagggatgtattcacatggacagcagtcgtgtctgggtatgcacaaaatggaatgttggaggaggccaggagggtgtttgatgccatgccagagaggaatgcggtgtcttggaatgcaatggtggcagcctacattcagcggaggatgatggatgaagcaaaggaactgttcaatatgatgccctgcaggaatgtggcatcatggaacacaatgttgacagggtatgctcaggcagggatgttggaggaggcaaaggcagtttttgacacgatgccacaaaaagatgcagtctcctgggctgcaatgctggctgcatattctcagggtggttgcagtgaggaaaccctgcagttgttcattgaaatggggaggtgtggtgaatgggtgaatagatcagcattcgcttgtgtgttgagcacatgtgctgacattgctgcacttgaatgtggaatgcagcttcatgggagattgattagggctggttatggggtgggatgttttgttgggaatgcactcctagctatgtactttaaatgtgggaacatggaggatgctcggaatgcattcgaggaaatggaagagagggatgtagtttcatggaatactatgattgctggttacgcacgacatggttttggaaaggaagcacttgaaatttttgacatgatgaggacaacatccaccaagccagatgatattactctggtaagaatttgtttcttggaacataccacatacaattag
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| Protein seq | MLPSRHLRSAARQRSHRPPPAAGDASSSSSSGRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVRICFLEHTTYN |
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| Function | Pentatricopeptide repeat-containing protein At4g02750 [UniProtKB/Swiss-Prot:Q9SY02] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0006030 | OsPr106_09g0006030.01 | Chr09 | 10613812 | 10615311 | - | NAM | ||
| CDS seq | atgctcccttcccgccacctccgttccgcggcgcggcagcggagccaccggccgccgccggccgccggggacgcctcctcctcttcctcctcggggaggctcgaaccggaggtgatccggagcaacaaggccatcacggcgcacatgcgcgccggccgcgtcgccgacgccgagcgcctcttcgccgcgatgccccggcgctccacctccacctacaacgccatgctcgccgggtactccgccaacggccgcctcccgctggcggcgtccctcttccgcgccatcccgcggccggacaactactcctacaacaccctcctccacgcgctggcggtctcctcgtccctcgccgacgcgcgcggcctgttcgacgaaatgcccgtgagggattcggtcacctacaacgtcatgatctcgtcccatgccaaccacggacttgtgtcgctcgcgcggcactactttgatcttgcccccgagaaggacgccgtctcatggaatgggatgcttgcggcgtatgtcaggaatggacgggttgaggaagcgaggggtttgtttaattcgaggacagagtgggatgtgatctcttggaacgcactgatgtcggggtatgtgcagtggggtaagatgtcagaggcaagggagctatttgataggatgcctgggagggatgtcgtatcctggaatattatggtctcgggttatgcaagaagaggggatatggtggaggcaagaaggttgtttgatgcagctccagtgagggatgtattcacatggacagcagtcgtgtctgggtatgcacaaaatggaatgttggaggaggccaggagggtgtttgatgccatgccagagaggaatgcggtgtcttggaatgcaatggtggcagcctacattcagcggaggatgatggatgaagcaaaggaactgttcaatatgatgccctgcaggaatgtggcatcatggaacacaatgttgacagggtatgctcaggcagggatgttggaggaggcaaaggcagtttttgacacgatgccacaaaaagatgcagtctcctgggctgcaatgctggctgcatattctcagggtggttgcagtgaggaaaccctgcagttgttcattgaaatggggaggtgtggtgaatgggtgaatagatcagcattcgcttgtgtgttgagcacatgtgctgacattgctgcacttgaatgtggaatgcagcttcatgggagattgattagggctggttatggggtgggatgttttgttgggaatgcactcctagctatgtactttaaatgtgggaacatggaggatgctcggaatgcattcgaggaaatggaagagagggatgtagtttcatggaatactatgattgctggttacgcacgacatggttttggaaaggaagcacttgaaatttttgacatgatgaggacaacatccaccaagccagatgatattactctggtaagaatttgtttcttggaacataccacatacaattag
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| Protein seq | MLPSRHLRSAARQRSHRPPPAAGDASSSSSSGRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVRICFLEHTTYN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.910494 | 2.332555 | 0.751343 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0327200 | RBH | 0.209947 | 0.220424 | 0.526205 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15800 | RBH | 0.141977 | 0.148254 | 0.135456 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0327200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005760 | RBH | 0.0 | 1.436609 | 0.422804 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005830 | RBH | 0.0 | 0.714565 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005970 | RBH | 0.280764 | 1.486305 | 0.881335 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005850 | RBH | 0.047542 | 0.078649 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014080 | RBH | 0.829059 | 1.362830 | 2.246242 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0171000 | RBH | 0.707365 | 1.3177925 | 0.299191 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006190 | RBH | 0.129008 | 0.106932 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0148600 | RBH | 0.5009755 | 2.00608 | 3.9524095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005850 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005820 | RBH | 0.0 | 7.526917 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005700 | RBH | 0.061442 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005790 | RBH | 0.000000 | 0.924444 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006100 | RBH | 0.203507 | 1.185905 | 0.664253 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005970 | RBH | 0.162193 | 1.575553 | 7.731903 |
