Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0005970 | OGI:09028980 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:9926796-9933566 | ||||||||
| Gene Symbol | OsRab11C2, - | ||||||||||
| DNA seq | cgtaatatacaggctggtaagaagttcaaggatgcaaacttttgtacatttgtgagtgggagttacagaatataatagcccttctaattagaactcttgctgccaatcagctacagtctgatatccaattacaacaacattttactgggatatgttatgcagtgaaaggtggggaggatctcaaatcctgtcaaTttacatggaacaatagtacaccaatgaagaaaccacaaatgcaaaccataaaaccactgacacttcaaagttagTtttttcccaacctgggtttaacagccccaaccttcttgatgtaacactaaaatctcacaggcaaccaggttaggcagcaaaagaaagttatccttttagttactcatgatataatcaggtgagcatatggttccttctcatggacataatggatttaggatgaacagcatccagactttttcacagcagAaacatcatctttgccaccaacattgatggtctgtcctcttggtggagcagcagggtcatcgccgatgtcgagggccttcttgctgaccacgcgatagatctgagttagcacctcagtgaaggcactttctacattcatggactccaacgcggacgtttccatgaagaaggtgctttccctctcggcgaagcccttggcgtcctcaaccgatacggccctaaggtgacgcagatcagccttgttgccaacaagcatgatgacgatgtttgcatctgtgtgatcccggagctccttcaaccacctctctacattctcaaaggtgacatggcgtgtcacgtcgtacacgacaagtgcgccaactgcccctcgatagtatgcacttgtaatcgcccgatacctgttgagagagtacagaaggaacttcaaagtccataccgagcactgaaactatcaacatgactgaaatgtcatcaaatacatggagcagattccaaagaaattgatcccaaaggatatgcctaatactccatatcaaatgcatgaagttctttgagacacactagggacagcaatttgattgtaaatggcacaagagtaatgctgtaaacatcagcatagagctgtaaATaaaaaaagaatattcctagtgattctatagttaTtggacgaccactcatggtattaactatttgaaggatggatggtcaactgccagaaaaggttttatttagagccataagacaaacagatgttgcagcagaagaattttctaaataatgtgaggagacagttggattgaaatcatgtaaatgtccatacgaattatcaaatgccaaatagtacatggcaacaacaggacatcaccaatgcaggtgtagaataaaactgcacgatagcgatgctagaaaataaactagaatctctctcagaacataagtcatagagcaacgtttccttcacaggaagatagcatgccccactggctcacattcaaagataggtaaataaaggattttacatgaaaaacaaaaataatgacgcatgagagagagcataattaagaaaggctatagttttgctgactgtacacgacgtgatgtaaactatccacatatccaatgcatggggcaaaaaaaaaaaaacaaagaaatatcaatcttaaaccaatatgctgtgcctactaatcctgaaccacgcagaagagagcgcaccagaaacaacctgcgcatttcctaaactatacgcacaaatcgcgtagactgaatcctacagaaaaacattgaatttcctgaagaaacgaagcgtgatcaacctaattggccgcagtgccgaaccaagcaatgctggatgatgaaccgatcagaacagagggcgtgcggcacaacaagagaacgcgagcaagaaaagagagagagagagaagggacctcacctctcctggccggcggtgtcccagatctgggccttgacgaccttgtcgtcgacgcggatgctcctggtggcgaactcgacgccgatggtggacttggactcgaggctgaactcgttgcgggtgaagcgggagaggaggttggatttgccgaccccggagtcgccgatgagcaccaccttgaacaggtagtcgtagtcgtcctccgccctgtacgccatcgcctcgccccccacccacctggccccggacgaagacgatgacgacgacgacgacgactgctcgcaccaCcgggggcccgcgcgcgcggccgcaagcgagagcgagaggaggggagggggaagcggaatggcgcgcggggtgcgcgtcctagtatttgagagaataggaaatgcaagagaggtggaggcaaaccttgtgttgttgcagagggcccccctggaatagcaaaacggggtggagctgtcagttaatcaggtttCcctgctgatggctgtttcgcccttctgtttttttctatgcacccaaccgatggaatttcgcgagaaccgatcgactttcgtgaaaccgctaggtcttggtttatgAaaaccggttggtattagacggtttttgcacgggcgtcaacccaaagtcattggtttttaccgggTtttttgtcagattttggaaaaccggtgaggagcggtttttactttgaaatcttcgcaaagctaaatccctgcacccaacacatgcgggctgcggcgacatgcgtccacccggcgatgcggccagccttcttctccttcacatgggtggcgatcggtgccggattccggcaggccatgttcctctgatccttttcttcagttccggttcaggctgggaatgttctgtcgatactttcagcagctcaatccaggctctgcccaaagtgaataaaccttgatcagtcagagttcagaaacgcatacatagtgatttttgggacaagatggtggcactctgttaccagtgcgtgcgtgcgtgcacgtttctgcttgcagtgtggctgagaactaagaagcatgtttggcacacagctttctaaacaagatgttgaaacttgcaaccagtgTttttaaaatcaggggctgtcatggcgctatcatgttttttggtggtcaaatgataagctcatgtgtatataaaatcgtggtggctgtggaatgaaaaattgagggctgttgtgatgttactaacagccttttgggcacactgccatggaaccgtataaatcacgattcaaaaccattggttgaaattgttttgttttatcaggctgccatgacccAacacatatcctccttaggctttccatgttaactttcaggcaaagtatatgaattaagcaactagtttgatgaagtattgtaaggaaatgtacaacttacaacaccagagggagccacagatctgaagatgcgtccacagctccactgttagacttcactgaacagaatcttcagcttggcaacacataatcagccactgtgctacttgcctgctgcaccatgatagcaacctgatcagataccacagattatctcttctcacgatttcatagccgcatctgatatatcatgcaaagtttagctgcactgacaatgaatctttatgtgaaccccaactgctcgtgtaagaccgtcaggcactccatttctctggcatgcttattttcgcagaaatggaataacaaaatatccattgtaacaccaatatttgagttcaacagagaatacttgcactgaatatttacaccatccttgattttaatagcatacctggtcacatagaaacaaagatattttgttgatggcctaaaaacaactatgatcccttgattttcagtatatctcagttgaattggtaccttaagatgtcactaacaggggaggattaacaccttgttgtccaaacttcttccaatctaaacctgcctcagcaaacttgtcctttgagactgttcacctgagctaccatcagtctatcacatgacactggaattatgatcttgtatattatgtttttgtctaggtatcacctcttcactcagcatggaaacaatcaccaactcaagtaatctttttgaaatggtggcctagtagaaggcctgtggaccgagtgagtcatcaagatgcctacaatattttgtttgtagcctgcattgcaccatctttgttgcgttgtcaactacagattcttcagggattcattgcacaagaaatctaattagccatcaccagtaatccccacaggaacaagaccctcctctaaagtggtgaaatcggttagaatcacgcaataggatcagcctgccctcaattgcggagatatacttgaaagcattgtgacagtctccacataccctgaggTtttttataactcggataggcctcccaggaggaatatttaaaattccataagcaacagcaagcttttcgctgtggtacttgagcatgtgctccttctcttcctcctccacatcatgcAaaaccatatctgtagctgatacatagccagctttcttcattctcatgtcaaggtcttctaagaaagcatatatcttttctttctcaggatgcacacaatcaccagctgagaaagtgtggactttattctgtacttcaatccaactgaatccaggcaccttcttcacaccccgctcttccatcataactctcattttcctcgcatctcgccatttcccagaagatgcatatatatttgaaagcaagacatacatgccagcattttcaggctccaactcaaatattttctcagctgcactcctgccaagttcaggattgcggtggatccgacttgcaccgagcaatgcaccccacatggtagaatctggctcaaatggcatgtccttcataagatcatgtgcttcagccaatcgtccagcccgcccaaggaggtctatcatacacgtatagtgctcaggttttgccgtcacaCcaaaatcgtggtgcattgagtagaagtatgaaatgcctttctcaactaagccagaatgactacatgctgcaagcactccgacctgaaagttaaagttaccccaaaaccatgagtatagaacaagggaacaaatcttcttgtttattactactaaaaaagaaaacaggctggctgagtacactttggtgcagaagctagatgccttcatttgcttaatgaaatctccattacctttAaaaaaccagggagttctttttactatttgctttttactaaactgggacagttctcactgttaacatttataataaatattttatcgaaagtgggtgaactttctacagatttagtcaaccatttataggagataaactgaatttagttatcggaaaattggtgtgctagcactaattgtatgtggtatgttccaggaaacaaattcttaccagagtaatatcatctggcttggtggatgttgtcctcatcatgtcaaaaatttcaagtgcttcctttccaaaaccatgtcgtgcgtaaccagcaatcatagtattccatgaaactacatccctctcttccatttcctcgaatgcattccgagcatcctccatgttcccacatttaaagtacatagctaggagtgcattcccAacaaaacatcccaccccataaccagccctaatcaatctcccatgaagctgcattccacattcaagtgcagcaatgtcagcacatgtgctcaacacacaagcgaatgctgatctattcacccattcaccacacctccccatttcaatgaacaactgcagggtttcctcactgcaaccaccctgagaatatgcagccagcattgcagcccaggagactgcatctttttgtggcatcgtgtcaaaaactgcctttgcctcctccaacatccctgcctgagcataccctgtcaacattgtgttccacgatgccacattcctgcagggcatcatattgaacagttcctttgcttcatccatcatcctccgctgaatgtaggctgccaccattgcattccaagacaccgcgttcctctctggcatggcatcaaacaccctcctggcctcctccaacattccattttgtgcatacccagacacgactgctgtccatgtgaatacatccctcactggagctgcatcaaacaaccttcttgcctccaccatatcccctcttcttgcataacccgagaccataatattccaggatacgacatccctccctggcatcctatcaaatagctcccttgcctctgacatcttaccccactgcacataccccgacatcagtgcgttccaagagatcgcatcccactctgtccttgaattaaacaaacccctcgcttcctcaacccgtccattcctgacatatgccgcaagcatcccattccatgagacagcgtccttctcgggggcaagatcaaagtagtgccgcgcgagcgacacaagtccgtggttggcatgggacgagatcatgacgttgtaggtgaccgaatccctcacgggcatttcgtcgaacaggccgcgcgcgtcggcgagggacgacgagaccgccagagcgtggaggagggtgttgtaggagaaggtgtccggtcgcgggatggcgcggaagagggatgccgccagcgggaggcggccgttggcggcgtaacccgcgagcatggcgttgtaggtggaggtggagcgccggggcatcgcggcgaagaggcgctcggcgtcggcgacgcggccggcgcgcatgtgcgccgtgatggccttgttgctccggatcacctcggggtcgagcctccccgaggaggaggcgtccccggcggccagcggcggccggtggctccgctgccgcgccgcggaacggaggtggcgggaagggagcat
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| CDS seq | atgctcccttcccgccacctccgttccgcggcgcggcagcggagccaccggccgccgctggccgccggggacgcctcctcctcggggaggctcgaccccgaggtgatccggagcaacaaggccatcacggcgcacatgcgcgccggccgcgtcgccgacgccgagcgcctcttcgccgcgatgccccggcgctccacctccacctacaacgccatgctcgcgggttacgccgccaacggccgcctcccgctggcggcatccctcttccgcgccatcccgcgaccggacaccttctcctacaacaccctcctccacgctctggcggtctcgtcgtccctcgccgacgcgcgcggcctgttcgacgaaatgcccgtgagggattcggtcacctacaacgtcatgatctcgtcccatgccaaccacggacttgtgtcgctcgcgcggcactactttgatcttgcccccgagaaggacgctgtctcatggaatgggatgcttgcggcatatgtcaggaatggacgggttgaggaagcgaggggtttgtttaattcaaggacagagtgggatgcgatctcttggaacgcactgatgtcggggtatgtgcagtggggtaagatgtcagaggcaagggagctatttgataggatgccagggagggatgtcgtatcctggaatattatggtctcgggttatgcaagaagaggggatatggtggaggcaagaaggttgtttgatgcagctccagtgagggatgtattcacatggacagcagtcgtgtctgggtatgcacaaaatggaatgttggaggaggccaggagggtgtttgatgccatgccagagaggaacgcggtgtcttggaatgcaatggtggcagcctacattcagcggaggatgatggatgaagcaaaggaactgttcaatatgatgccctgcaggaatgtggcatcgtggaacacaatgttgacagggtatgctcaggcagggatgttggaggaggcaaaggcagtttttgacacgatgccacaaaaagatgcagtctcctgggctgcaatgctggctgcatattctcagggtggttgcagtgaggaaaccctgcagttgttcattgaaatggggaggtgtggtgaatgggtgaatagatcagcattcgcttgtgtgttgagcacatgtgctgacattgctgcacttgaatgtggaatgcagcttcatgggagattgattagggctggttatggggtgggatgttttgtTgggaatgcactcctagctatgtactttaaatgtgggaacatggaggatgctcggaatgcattcgaggaaatggaagagagggatgtagtttcatggaatactatgattgctggttacgcacgacatggttttggaaaggaagcacttgaaatttttgacatgatgaggacaacatccaccaagccagatgatattactctggggggccctctgcaacaacacaaggtggtgctcatcggcgactccggggtcggcaaatccaacctcctctcccgcttcacccgcaacgagttcagcctcgagtccaagtccaccatcggcgtcgagttcgccaccaggagcatccgcgtcgacgacaaggtcgtcaaggcccagatctgggacaccgccggccaggagaggtatcgggcgattacaagtgcatactatcgaggggcagttggcgcacttgtcgtgtacgacgtgacacgccatgtcacctttgagaatgtagagaggtggttgaaggagctccgggatcacacagatgcaaacatcgtcatcatgcttgttggcaacaaggctgatctgcgtcaccttagggccgtatcggttgaggacgccaagggcttcgccgagagggaaagcaccttcttcatggaaacgtccgcgttggagtccatgaatgtagaaagtgccttcactgaggtgctaactcagatctatcgcgtggtcagcaagaaggccctcgacatcggcgatgaccctgctgctccaccaagaggacagaccatcaatgttggtggcaaagatgatgttTctgctgtgaaaaagtctggatgctgttcatcctaa
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| Protein seq | MLPSRHLRSAARQRSHRPPLAAGDASSSGRLDPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYAANGRLPLAASLFRAIPRPDTFSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLGGPLQQHKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSVEDAKGFAERESTFFMETSALESMNVESAFTEVLTQIYRVVSKKALDIGDDPAAPPRGQTINVGGKDDVSAVKKSGCCSS |
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| Function | Pentatricopeptide repeat-containing protein At4g02750 [UniProtKB/Swiss-Prot:Q9SY02] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0005970 | OsNaBo_09g0005970.01 | Chr09 | 9926796 | 9933566 | - | NAM | ||
| CDS seq | atgctcccttcccgccacctccgttccgcggcgcggcagcggagccaccggccgccgctggccgccggggacgcctcctcctcggggaggctcgaccccgaggtgatccggagcaacaaggccatcacggcgcacatgcgcgccggccgcgtcgccgacgccgagcgcctcttcgccgcgatgccccggcgctccacctccacctacaacgccatgctcgcgggttacgccgccaacggccgcctcccgctggcggcatccctcttccgcgccatcccgcgaccggacaccttctcctacaacaccctcctccacgctctggcggtctcgtcgtccctcgccgacgcgcgcggcctgttcgacgaaatgcccgtgagggattcggtcacctacaacgtcatgatctcgtcccatgccaaccacggacttgtgtcgctcgcgcggcactactttgatcttgcccccgagaaggacgctgtctcatggaatgggatgcttgcggcatatgtcaggaatggacgggttgaggaagcgaggggtttgtttaattcaaggacagagtgggatgcgatctcttggaacgcactgatgtcggggtatgtgcagtggggtaagatgtcagaggcaagggagctatttgataggatgccagggagggatgtcgtatcctggaatattatggtctcgggttatgcaagaagaggggatatggtggaggcaagaaggttgtttgatgcagctccagtgagggatgtattcacatggacagcagtcgtgtctgggtatgcacaaaatggaatgttggaggaggccaggagggtgtttgatgccatgccagagaggaacgcggtgtcttggaatgcaatggtggcagcctacattcagcggaggatgatggatgaagcaaaggaactgttcaatatgatgccctgcaggaatgtggcatcgtggaacacaatgttgacagggtatgctcaggcagggatgttggaggaggcaaaggcagtttttgacacgatgccacaaaaagatgcagtctcctgggctgcaatgctggctgcatattctcagggtggttgcagtgaggaaaccctgcagttgttcattgaaatggggaggtgtggtgaatgggtgaatagatcagcattcgcttgtgtgttgagcacatgtgctgacattgctgcacttgaatgtggaatgcagcttcatgggagattgattagggctggttatggggtgggatgttttgtTgggaatgcactcctagctatgtactttaaatgtgggaacatggaggatgctcggaatgcattcgaggaaatggaagagagggatgtagtttcatggaatactatgattgctggttacgcacgacatggttttggaaaggaagcacttgaaatttttgacatgatgaggacaacatccaccaagccagatgatattactctggggggccctctgcaacaacacaaggtggtgctcatcggcgactccggggtcggcaaatccaacctcctctcccgcttcacccgcaacgagttcagcctcgagtccaagtccaccatcggcgtcgagttcgccaccaggagcatccgcgtcgacgacaaggtcgtcaaggcccagatctgggacaccgccggccaggagaggtatcgggcgattacaagtgcatactatcgaggggcagttggcgcacttgtcgtgtacgacgtgacacgccatgtcacctttgagaatgtagagaggtggttgaaggagctccgggatcacacagatgcaaacatcgtcatcatgcttgttggcaacaaggctgatctgcgtcaccttagggccgtatcggttgaggacgccaagggcttcgccgagagggaaagcaccttcttcatggaaacgtccgcgttggagtccatgaatgtagaaagtgccttcactgaggtgctaactcagatctatcgcgtggtcagcaagaaggccctcgacatcggcgatgaccctgctgctccaccaagaggacagaccatcaatgttggtggcaaagatgatgttTctgctgtgaaaaagtctggatgctgttcatcctaa
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| Protein seq | MLPSRHLRSAARQRSHRPPLAAGDASSSGRLDPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYAANGRLPLAASLFRAIPRPDTFSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLGGPLQQHKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSVEDAKGFAERESTFFMETSALESMNVESAFTEVLTQIYRVVSKKALDIGDDPAAPPRGQTINVGGKDDVSAVKKSGCCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.162193 | 1.575553 | 7.731903 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0327100 | RBH | 0.000000 | 0.0 | 4.932293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15790 | RBH | 0.000000 | 0.0 | 1.037418 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0327100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005760 | RBH | 0.0 | 1.436609 | 0.422804 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005830 | RBH | 0.0 | 0.714565 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005970 | RBH | 0.280764 | 1.486305 | 0.881335 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005850 | RBH | 0.047542 | 0.078649 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006030 | RBH | 0.910494 | 2.332555 | 0.751343 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0170900 | RBH | 0.205636 | 0.723354 | 0.1568765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006190 | RBH | 0.129008 | 0.106932 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0148500 | RBH | 0.362225 | 1.162417 | 1.6784805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005820 | RBH | 0.0 | 7.526917 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005700 | RBH | 0.061442 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005790 | RBH | 0.000000 | 0.924444 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006100 | RBH | 0.203507 | 1.185905 | 0.664253 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0003200 | RBH | 0.0 | 0.0 | 0.0 |
