Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_09g0001300 | OGI:02042770 | 10/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr09:2263173-2271996 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggctagaaggaaatcttgtggcatatccatcagtaacaacacattaaccataacttccataactaggtccatatagatccccacgtcacaaaataataagtatgctcatatgtctccactgtatgcagcaaaactacaaccataaatcgatgagcttatatatcttaatcctagcaaactggaatctccaagataacagtatagtactcctaaccaaaatatagtactttagatttaggtccactttaaatgtcacagttttaaagcgctcctaatcaaaatataccacatgctacacctagatatgttcaaaagatttcacacagcaatccatgagtctccaccttccaaagtcttcagtcatgctgtgagctcagctcctaccactacctgaaaaataaaatgcataaggggtttatacaagacaagtgtaagccatacaacaaccgatgattcagtaattgattgctacattataacatattacaagcaccatacaagacacaagtttaatttttgtgaaggttcaatctagttgacaatcagtgaatatttggagtagtcggaagaattcgaaaggaagtaaaacagtaaacttaatgagtgaagcattatcaactttagatagtgtctataattagacaaaagagtgcatacctgactgatcccgagttagtagtgctgcattttaatcgtacttgatctataaaaagttaataggagttagtagtatatatgcagatcacacataggtaaaaacacaaataatttagcctatacattacatgagtacgtggccaagcaattgatagcccgaaagcatttgccattgtttgtatgctcccatatggacgaggaagcactacatcccttttaatgactgagttcacaaccacttcatagaatcttggaccaagagcagttccacccaccaatgtgccggggttacttgtttgcacagtagccttcgccacaggaagattgtatggagccacaagagaaagaagtgtgacttcttggccaccctacaacaatataacacggttttcacaaaagtaggactacaatttatttatcaaactaaagctgaaacatagatattaacataaggactttgtaagaaattatacccccatatttcttctttctgggactgcaactgtcttacgtggtaactacacattcatagagttaagtgtcaccattttttacttagtccgacataaaacacataaaaacaatctagaaccaatagcaaagtgttgcatacctgctgcctgtaagcatggttgctaacttcatgatcactcacttgttgatcaacctacaatgatgtggcacaaggtttagagaagaatataacaagtaatttattagatcgaaaccaaaaacagaaacattgtaaagtaggacgagtctaaatttattaggctggggccaaaacataaacattgacagcaagaatatctaagaagttataccccatcatgtcttccttcagggatcgcagctctcctacgtggtaactacacatttttaaagtttgtcactttgttcagtaagatctatatgaaaagatgaaaaataagccaatagctaatgttgtataccttctgcctgtaagcgtggctgctcagttcttggtcactcacttgttggttgacctacaacaatatagcagattgtttataaaagaatattcaaagtgagaaaggagcaccgttagagactgttgcttacatgctgcctgtagtcatggtttctcacttcgtggtcattcatttcttggtcatactcagcctcacttacatccacactatcctcgctgggtgtaggattggaaccacgttcaagaggactcccaacatttggtgtagtttctcttccttgactagcatagaacatccgcttcaactctacaatctcatcccgtagctcgtgctcaactttttgtcgaccacgaattgccatttgaacctttgttggagtatatttgcgatgcccatgaatgcccaaagtagagggtgtaggtcctaaaccaatagagcgaacatacccccttggctcacgtccaaatacatgagagaaaacatcaccttcctgcacagttttctctctcaattctggatactttgtggttgtttcttgaagttttctttagaacagaaccaattttagcagcaaaaaaatatgaatgaatgtagatgtaaagttggactagcttacaatactctctgcagcttgtgtcaatggagtcccatttttacgtgtatgggttttgatatacatctcatctctgcgtggcttgtaaccatgttccacaaactgcattcatcgaaacagtctagtgacaaaaaggcacaaatggagtgaatactagcaaaaaaaaattgtttgataaatttacccattcatgtcgggcacgagcaaatgtcatgctaccagaggtatgtggagttaataccttgccacgattcattttgcctcttaagctacgagccttcaaaaataaatttaattaaacaaacaacaaggaaaacaattaatgatttaatcatcagtgtacctgtgcttctggtgatagccaatgatggacaagccactcccaatgttcaggtagcactcttttatcacaagctgcaataagttcctcctcagtctttgtctcattaaaatgggctttcttcagatcagctttgtaatccttccacttcttcgcagcagtagccaaagaataattttcaagccgttcatccatctcatatacgcactatgccaagaaaggttacatccattaggtcaaaagaataatccaaaatcagttcctacacctagacatatagcacataaaagcttagctaagagcagagaataacaggagctacattattataataaaacaagggcatctgtataaagaaaaaagtaccatgtcttgaagtcttgattgtgagcacgataatagaacaaatatattagttgtcatacctccaaagcatcgataatgaactgcttcgaatcttcatcaacatgtctccagtcatcatgattgagagggaaacccttagttcttacaagtgtaccaacaacatgtggaaactctttagcagctttccctactggctgatcaaattcgttgaactccatcttgatcagtggctcgtcttcttctctaaaccatatgttatcctttctagtgaattttcttccttctcgtttctttggttgtgctctgttggaatctgaaatttgcaagtcagttaattagtcaatcaaatatatgaattgctcatatttataaaaataaaagaaaaccatacccccattctgttcagcagccacaggttgaggaccttcatcttgtccttcaggaccattagtacttccatttcttggtagcctagggtgcagatcactatgtcctacatgctcatttgttgtatcaattcttgctagtctggggcgtagatttcgaggttcgattggcacagagctaatgcattttctcttctacaatatcaaaatacttgttaaaccactatgattttgttaatagcaatgcatcacaaaaaaaataaaaacatatcagcataccttgctagttttcttagcttgctgtgaagagctagctccttcagtccttatagactttagcatagattctagatttagaacttgtatcctgcgcttgttctcagcaacattttgatccctcctcctttcatagtcattcacaggtgtgccatccctacttcctcctccttttcgcattttttctcctgaaaggcaaaagtagatatgtcagcatatgtaattagtcatgcacacacatacatgtagcagcagtaccatatagtaaataacaaatgacacttacttccctttctcacttaggtcaacaatagaaccacctaaatcttttctaaaatgactgccatcctcaatcacaccaaaatttgcattattgctcagattaacatatgggcttgtaagttcggaattgttctccaaatgttcattttcatcttcagccaggtcatagcagtttcgtggcctagattgcctcacagaaaaccaatccttttctagtggatccattacatagtaaacctgaatagcttgtgaggctaatatgaaaggttcatctgctaacttttcaccagtgttgaataaatgcttgaagttcacattaacaataccaaatttgtctaccttcacccatttatcttctacttggttgtcaacccaatcacacttgaaaagaacaatattccctttgcggaaatagtccaactctattatttctgtaataatcccataatatgtcttctttctaatcatagggctctcattgttcccaatataacaagaagtctctgccactatagctaccccactgctttgaacagacctaccctcatcataagcctttgtatggaaattatatccatatattgcatagctattgtacttctttgcaaataatagagggcctttagctaaaatttgcacttcatcacttacttgctcactactcatggttaattcagctacctgtagttattgaatgatatggtcaactccaaaatatttgtgctacaaggtattcacatagataagcactttttaacttacatgaagcctaaaccaatcatggaacgtttcatgatgcaaacgatcaatttcacgcttatttcgacaattagttgaaaggtattccaagtgcttgctgcaaggaacaattcatgattgctacagatacatacataaaagaaaatataactaaggtgtataacttactctataaatggctctatatgatcatagttcaataggatgtatctatgagcttgaacccatgcttggtaatctaaagtaactgcacttttgccaaccaagcctcgcccaacattttttgaaaagtatggattgataccagaatttatatttgtggtgccatcatcattcctgtcttttcgtgtatatctagtctcacaaccatttagatattgagagcaaaatgtaaggctctcatcaaatatataactttcagctatagaaccctctggatgacttctagtacgaacataccctttcaatctcatcaaaaacctacagataatgggtacattaattgtcaaagccttttcaaacaaattaacatagttttctttcaaaaaaacatgttttacaaaattacctctcaactggatacatattgtggtacaatactggaccaccgagacacacttgggcagggagatgaacagtcaagtgcaccataatatcaaaaaaggatggcaagaatatcgtctctaagatgcacaaggtttcagctatttctgcctcaagcttctgcatatgacttatgcgtatcactggagaataaatttgcttgaaaaagttgctcacacagatcagcgctgcacaaactctctcaggcaagatccttctgatcgctagaggaagcaagtgttgcagcaaaatatggttgtcatggctctttaacccaaccaactttttctcattaacacgaacattattgtgtatatttgacgcatacccatcaggaaacttcactcccttcaaaacttcacaaaacatcttcttctcatctggactcattgtgtatggagcaggaggtaagaaatatttttctccaactttaataggatgaagatctttccttatccccagaagttggaggtctaagcaagaattcagattatctttggactttccatctattcccaaaagtgtatttattatattatcacaaacatttttctcaatgtgcataacatcaaaactgtgtcgaagcataacatctttccaatagggtaacctgaaaaggatagatctttttttccccaatattggtgggtctcctctcttcctcttagttgtgggtttttttcctgttgggtccttgccaaaaactacatttaaatgttctgtctgcctcaaaacatcctcaccagaaagaggagaaggtgctagtctaaattctgttgtgccatcaaatgattttgtatctgatctaaatctatgatcagcatctaaaaacctgcgatgtgccatgtaagaactcttgctgccctttgatagccttgtataaccggtttctatgtggcaatcagtgcaagcaacttcacctgaagttgtgcatccatgaaaatatcctaagccgggatagtctgatatggtggttaatactgcagcacgcagttggaaaaattcacccttagaagcatcataagtcctaatgccttcatgccaaagagattccaaatcatctattaatggttccatgtagacatccatatcattaccaggggcagttggaccaggaattaacagtgataggatgaaattaggttgtttcatacacatccagggtggcacattgtatggaattgcaataacaggccaagtactatgggtagaattcaaggatctgaagggattgaagccatcagtagctaacgctaatcttatattacgactttcattaccaaaggtaggatggactgtgtccaagtgtttccaagctggagaatctgctggatgtctaagcaatccatcttttgtacgtccttcatcatgccacctcatatttttggccatctctgggttaatgtatagtctttgaagtctttccttaattgggaaatacctaagaacttttctaggaactttgtggaaacgttttccatcaagactctttctttccatcttccatcgagaagtattacattttgggcaggaagtataattttcatactgtttccaaaataatatgcaatcattttcacaagcatgaatgttaatgtagccaagacctagagatttaacggtcttctttgcttcataaaaatttttaggtagtgctgcaccttcaggaaatgcctctctaagtaagtccagtagcatgtcaaagcttttatcactccatcctcctagaaattttgtatgcagcaaacggacaaagaaatttagtttagagaaggtcttgcaaccagggtacagctcctgacttgcatcatctactaatctataaaaatcatcgacatcattattggcatcccctgaactgccatcagcagcacccccctcccccatttgatctaaaccatatgccatatctctaagcatttcaggaatttcatcacgatcaactgccctctgttctacttgaacttgttcatgtgtagtgcaatgtgcagaagatgatgcttccccatgaaaaatccacagccggtacccatgcttaaatccatcacatatcaggtgttcaattacaacgtttgcttccaaccatgaacaattaacacactttttgcaaggacacagtattttatttccttttgctgaatgagtaaaagcaaattctatgaagttatcgacaccacgtctgtacttagttgtgctcctgaaatactatattattagagtttggacaaatgaagatagtgaggctaaacaattccatgctagtaattgtgtgtttgtacctaggcagatccatcgatctcttatccatgcttgccttttataatgaaatactaaatgtctgaatataaaatgcaaatatttgttatgatactgcaaaaacacaaatggttgccatagctctcaagctcaacaagcattccagtcatacattcaaaaggcaaaacatcgtgtaaaaaaaaactaaagtatgtaaaagtagttagtaaaccacatagaagtaagaaaaactgatgtcaaagagtaagggaaacatatatgtaccttttagttgtgcgtttgcttgttaatttgttctggtttgcttccaaccttgttggtgtctctgattactcagcaagaccttctacatttttggataataaatacaaaattttaaatgcaacctctgcgatatattttgctcttgtgcaatgcaattgaaaaattaaataatctgagtgacaatcctcaggttcagaaaagagcatctgtatttctttttacttaagccactgaacatttgtattttcagatgaaataccataaacaaaatcaagtagtcaccctgtttatatgcagtacaatgggttagttagataccatatcacttaaggtaaattttgttaattgttagcacaaataaaaaggcagctatacacctaaatccagacaaagaatggatgctcgcatttgatggtctgctgctttacttacataattagaggagccccctagtcataaactaataaacagagaaggagttccacttccatacctagctaaatatgtcagggaggtcaagtagacaagaattaagcaaattccaccataactactgaagatagatctgcaatggaaaaggtagaaaattggttatgccagggtgaaataagcacacatgagtagtaacatctcagaagggatgggacaacaaccaattggaaaaatattccttttacaaagacagtaagaaccatcatctatcatttctaccccattagtaaaattaaaaatcttagcacaagactgaacataaaacagaacaaataacaatgaactctgctccatcaccatatctgcctggggaataaagttaagataagggggaagaaacattaggagggaaggggaagaggaagcagggaatggggggacaagcttgaccttgtgttgttgattgcagtggacaaagaaacaccgtcttgagctttaagaagggacgacggtgcccagaacctcaggtgaagcagatctggtgagcacagatgcaggtggctccctaggagtgatgaggtcgtgttcttggtgatgaatcgcagccaaatgcgac
More
|
||||||||||
| CDS seq | atgcgaaaaggaggaggaagtagggatggcacacctgtgaatgactatgaaaggaggagggatcaaaatgttgctgagaacaagcgcaggatacaagttctaaatctagaatctatgctaaagtctataaggactgaaggagctagctcttcacagcaagctaagaaaactagcaagaagagaaaatgcattagctctgtgccaatcgaacctcgaaatctacgccccagactagcaagaattgatacaacaaatgagcatgtaggacatagtgatctgcaccctaggctaccaagaaatggaagtactaatggtcctgaaggacaagatgaaggtcctcaacctgtggctgctgaacagaatggggattccaacagagcacaaccaaagaaacgagaaggaagaaaattcactagaaaggataacatatgcgaggatagtgtggatgtaagtgaggctgagtatgaccaagaaatgaatgaccacgaagtgagaaaccatgactacaggcagcatgtcaaccaacaagtgagtgaccaagaactgagcagccacgcttacaggcagaaggttgatcaacaagtgagtgatcatgaagttagcaaccatgcttacaggcagcaggtagtggtaggagctgagctcacagcatga
More
|
||||||||||
| Protein seq | MRKGGGSRDGTPVNDYERRRDQNVAENKRRIQVLNLESMLKSIRTEGASSSQQAKKTSKKRKCISSVPIEPRNLRPRLARIDTTNEHVGHSDLHPRLPRNGSTNGPEGQDEGPQPVAAEQNGDSNRAQPKKREGRKFTRKDNICEDSVDVSEAEYDQEMNDHEVRNHDYRQHVNQQVSDQELSSHAYRQKVDQQVSDHEVSNHAYRQQVVVGAELTA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0001300 | OsPr106_09g0001300.01 | Chr09 | 2263533 | 2271996 | - | NAM | ||
| CDS seq | atgcgaaaaggaggaggaagtagggatggcacacctgtgaatgactatgaaaggaggagggatcaaaatgttgctgagaacaagcgcaggatacaagttctaaatctagaatctatgctaaagtctataaggactgaaggagctagctcttcacagcaagctaagaaaactagcaagaagagaaaatgcattagctctgtgccaatcgaacctcgaaatctacgccccagactagcaagaattgatacaacaaatgagcatgtaggacatagtgatctgcaccctaggctaccaagaaatggaagtactaatggtcctgaaggacaagatgaaggtcctcaacctgtggctgctgaacagaatggggattccaacagagcacaaccaaagaaacgagaaggaagaaaattcactagaaaggataacatatgcgaggatagtgtggatgtaagtgaggctgagtatgaccaagaaatgaatgaccacgaagtgagaaaccatgactacaggcagcatgtcaaccaacaagtgagtgaccaagaactgagcagccacgcttacaggcagaaggttgatcaacaagtgagtgatcatgaagttagcaaccatgcttacaggcagcaggtagtggtaggagctgagctcacagcatga
More
|
|||||||
| Protein seq | MRKGGGSRDGTPVNDYERRRDQNVAENKRRIQVLNLESMLKSIRTEGASSSQQAKKTSKKRKCISSVPIEPRNLRPRLARIDTTNEHVGHSDLHPRLPRNGSTNGPEGQDEGPQPVAAEQNGDSNRAQPKKREGRKFTRKDNICEDSVDVSEAEYDQEMNDHEVRNHDYRQHVNQQVSDQELSSHAYRQKVDQQVSDHEVSNHAYRQQVVVGAELTA
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0001300 | OsPr106_09g0001300.02 | Chr09 | 2263533 | 2271137 | - | NAM | ||
| CDS seq | atgcgaaaaggaggaggaagtagggatggcacacctgtgaatgactatgaaaggaggagggatcaaaatgttgctgagaacaagcgcaggatacaagttctaaatctagaatctatgctaaagtctataaggactgaaggagctagctcttcacagcaagctaagaaaactagcaagaagagaaaatgcattagctctgtgccaatcgaacctcgaaatctacgccccagactagcaagaattgatacaacaaatgagcatgtaggacatagtgatctgcaccctaggctaccaagaaatggaagtactaatggtcctgaaggacaagatgaaggtcctcaacctgtggctgctgaacagaatggggattccaacagagcacaaccaaagaaacgagaaggaagaaaattcactagaaaggataacatatgcgaggatagtgtggatgtaagtgaggctgagtatgaccaagaaatgaatgaccacgaagtgagaaaccatgactacaggcagcatgtcaaccaacaagtgagtgaccaagaactgagcagccacgcttacaggcagaaggttgatcaacaagtgagtgatcatgaagttagcaaccatgcttacaggcagcaggtagtggtaggagctgagctcacagcatga
More
|
|||||||
| Protein seq | MRKGGGSRDGTPVNDYERRRDQNVAENKRRIQVLNLESMLKSIRTEGASSSQQAKKTSKKRKCISSVPIEPRNLRPRLARIDTTNEHVGHSDLHPRLPRNGSTNGPEGQDEGPQPVAAEQNGDSNRAQPKKREGRKFTRKDNICEDSVDVSEAEYDQEMNDHEVRNHDYRQHVNQQVSDQELSSHAYRQKVDQQVSDHEVSNHAYRQQVVVGAELTA
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0001300 | OsPr106_09g0001300.03 | Chr09 | 2263173 | 2265178 | - | IsoSeq | ||
| CDS seq | atgaagttagcaaccatgcttacaggcagcagttaccacgtaagacagttgcagtcccagaaagaagaaatatggggggtggccaagaagtcacacttctttctcttgtggctccatacaatcttcctgtggcgaaggctactgtgcaaacaagtaaccccggcacattggtgggtggaactgctcttggtccaagattctatgaagtgg
More
|
|||||||
| Protein seq | MKLATMLTGSSYHVRQLQSQKEEIWGVAKKSHFFLLWLHTIFLWRRLLCKQVTPAHWWVELLLVQDSMKW |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr09 | 2264496 | 2264783 | - | OsPr106_09g0001300.03 | OsPr106_09g0001300.03,OsPr106_09g0001300.01,OsPr106_09g0001300.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 29.250967 | 35.822304 | 15.774426 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0030300 | RBH | 7.3562745 | 6.494396 | 7.556242 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015280 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001240 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001230 | RBH | 1.661301 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001360 | RBH | 14.673465 | 22.786509 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001260 | RBH | 0.101306 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
