Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_08g0023860 | OGI:08077320 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr08:28500749-28502401 | ||||||||
| Gene Symbol | PIC27 | ||||||||||
| DNA seq | ttagattccagaccttgattcctcctccatttctgttttcgctgctgctggaatgcatatacgttgaacggaagagacaagatcaaaatactcaccaccttctctgcaccgtgtttccaatccagggcacccttgtatggacagttctttcagtgttggaagtcgctggaggagaccctgtgggaattcctctatctctgcacatgcctgaatctccaaaattttaagggaaacgaggccatccatcccatcaggaagatctttcaggacatagcagttcatcaaataaagatgccttaacatggccagatttccaaggttcgaaggcaatgccaccaatcttcggcaagattctaaccgcagatcctgcagggatgcaggcagcattgggatctccagtagattgtagcagttttgtatgtgtaacctctctagatgggacagtgacatgaatttttcctcggatgatgaaccttttccctcaagtctatgacagtgctcaatatataggtgtcgaaggtgaatcaagctcgtcaactcctcagttggccagcacacaagactgaggcacatatgaatatgcaatacctccacaaaggcaaagcatttccagagcccgagacgcatttcggatgagccggatgcagccgtgaagcagtttactagactcaaactccgaaggtattctagctggccttgatttgcctccacctgcagagtggttggaatgtgtgttgaagatctaagaactagttctacgagagatggccatgagcccaaaggcatgctcacacaatcacaaagactgtttgcaacgtaattgagcttggacaatgatgtcagatgtgtgagttcgttcattgcaagcatataagatccaaatctgtccagttcttttagaaccggacagtctgggacacttgcaagtttactacagcgaatgatctgtagcatttcgagctctggaaatgtaaccaaattcttagcctcacctgcagtattttctgcccatttctccaagctaaataacaactctagtttcagagactttaactttgggaaaacttgctgagggatggtgtatccttcagctcccacaccaacgttcttacacaatgtggttagattatccatacgggataactgcagatgctcaagcgagaccgataaccacagtgttgatagatccttgcatcctaaacagttggaaatgcggagagttgttaggcactgcaacatctgtgggtctctcatccattgtgggatcttcaggccactatatccatgcagctctaaaattttgagcttaccatgaggtgtaagtgactccaacacttcttcctcattgtaggcattgttttccggtgtgtaaattttatcacgaccccagtgcaatagtagttcacttagattttccttctgatggagattggcttctattccattgttcctgcaattaatttttctcaaattgtacagttccaacctgttggcaatgtgacgcaagttcttgagctcgtcaattccacaaccagctttagtgtccaaaacaaatgttgttagagtgcgaagattgttcaaaagaccaaagtttggtggcatccgCACcaaactatcacatcccagaagataaagatggaggagcttcctcat
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| CDS seq | atgaggaagctcctccatctttatcttctgggatgtgatagtttgGTGcggatgccaccaaactttggtcttttgaacaatcttcgcactctaacaacatttgttttggacactaaagctggttgtggaattgacgagctcaagaacttgcgtcacattgccaacaggttggaactgtacaatttgagaaaaattaattgcaggaacaatggaatagaagccaatctccatcagaaggaaaatctaagtgaactactattgcactggggtcgtgataaaatttacacaccggaaaacaatgcctacaatgaggaagaagtgttggagtcacttacacctcatggtaagctcaaaattttagagctgcatggatatagtggcctgaagatcccacaatggatgagagacccacagatgttgcagtgcctaacaactctccgcatttccaactgtttaggatgcaaggatctatcaacactgtggttatcggtctcgcttgagcatctgcagttatcccgtatggataatctaaccacattgtgtaagaacgttggtgtgggagctgaaggatacaccatccctcagcaagttttcccaaagttaaagtctctgaaactagagttgttatttagcttggagaaatgggcagaaaatactgcaggtgaggctaagaatttggttacatttccagagctcgaaatgctacagatcattcgctgtagtaaacttgcaagtgtcccagactgtccggttctaaaagaactggacagatttggatcttatatgcttgcaatgaacgaactcacacatctgacatcattgtccaagctcaattacgttgcaaacagtctttgtgattgtgtgagcatgcctttgggctcatggccatctctcgtagaactagttcttagatcttcaacacacattccaaccactctgcaggtggaggcaaatcaaggccagctagaataccttcggagtttgagtctagtaaactgcttcacggctgcatccggctcatccgaaatgcgtctcgggctctggaaatgctttgcctttgtggaggtattgcatattcatatgtgcctcagtcttgtgtgctggccaactgaggagttgacgagcttgattcaccttcgacacctatatattgagcactgtcatagacttgagggaaaaggttcatcatccgaggaaaaattcatgtcactgtcccatctagagaggttacacatacaaaactgctacaatctactggagatcccaatgctgcctgcatccctgcaggatctgcggttagaatcttgccgaagattggtggcattgccttcgaaccttggaaatctggccatgttaaggcatctttatttgatgaactgctatgtcctgaaagatcttcctgatgggatggatggcctcgtttcccttaaaattttggagattcaggcatgtgcagagatagaggaattcccacagggtctcctccagcgacttccaacactgaaagaactgtccatacaagggtgccctggattggaaacacggtgcagagaaggtggtgagtattttgatcttgtctcttccgttcaacgtatatgcattccagcagcagcgaaaacagaaatggaggaggaatcaaggtctggaatctaa
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| Protein seq | MRKLLHLYLLGCDSLVRMPPNFGLLNNLRTLTTFVLDTKAGCGIDELKNLRHIANRLELYNLRKINCRNNGIEANLHQKENLSELLLHWGRDKIYTPENNAYNEEEVLESLTPHGKLKILELHGYSGLKIPQWMRDPQMLQCLTTLRISNCLGCKDLSTLWLSVSLEHLQLSRMDNLTTLCKNVGVGAEGYTIPQQVFPKLKSLKLELLFSLEKWAENTAGEAKNLVTFPELEMLQIIRCSKLASVPDCPVLKELDRFGSYMLAMNELTHLTSLSKLNYVANSLCDCVSMPLGSWPSLVELVLRSSTHIPTTLQVEANQGQLEYLRSLSLVNCFTAASGSSEMRLGLWKCFAFVEVLHIHMCLSLVCWPTEELTSLIHLRHLYIEHCHRLEGKGSSSEEKFMSLSHLERLHIQNCYNLLEIPMLPASLQDLRLESCRRLVALPSNLGNLAMLRHLYLMNCYVLKDLPDGMDGLVSLKILEIQACAEIEEFPQGLLQRLPTLKELSIQGCPGLETRCREGGEYFDLVSSVQRICIPAAAKTEMEEESRSGI |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_08g0023860 | OsPr106_08g0023860.01 | Chr08 | 28500749 | 28502401 | - | NAM | ||
| CDS seq | atgaggaagctcctccatctttatcttctgggatgtgatagtttgGTGcggatgccaccaaactttggtcttttgaacaatcttcgcactctaacaacatttgttttggacactaaagctggttgtggaattgacgagctcaagaacttgcgtcacattgccaacaggttggaactgtacaatttgagaaaaattaattgcaggaacaatggaatagaagccaatctccatcagaaggaaaatctaagtgaactactattgcactggggtcgtgataaaatttacacaccggaaaacaatgcctacaatgaggaagaagtgttggagtcacttacacctcatggtaagctcaaaattttagagctgcatggatatagtggcctgaagatcccacaatggatgagagacccacagatgttgcagtgcctaacaactctccgcatttccaactgtttaggatgcaaggatctatcaacactgtggttatcggtctcgcttgagcatctgcagttatcccgtatggataatctaaccacattgtgtaagaacgttggtgtgggagctgaaggatacaccatccctcagcaagttttcccaaagttaaagtctctgaaactagagttgttatttagcttggagaaatgggcagaaaatactgcaggtgaggctaagaatttggttacatttccagagctcgaaatgctacagatcattcgctgtagtaaacttgcaagtgtcccagactgtccggttctaaaagaactggacagatttggatcttatatgcttgcaatgaacgaactcacacatctgacatcattgtccaagctcaattacgttgcaaacagtctttgtgattgtgtgagcatgcctttgggctcatggccatctctcgtagaactagttcttagatcttcaacacacattccaaccactctgcaggtggaggcaaatcaaggccagctagaataccttcggagtttgagtctagtaaactgcttcacggctgcatccggctcatccgaaatgcgtctcgggctctggaaatgctttgcctttgtggaggtattgcatattcatatgtgcctcagtcttgtgtgctggccaactgaggagttgacgagcttgattcaccttcgacacctatatattgagcactgtcatagacttgagggaaaaggttcatcatccgaggaaaaattcatgtcactgtcccatctagagaggttacacatacaaaactgctacaatctactggagatcccaatgctgcctgcatccctgcaggatctgcggttagaatcttgccgaagattggtggcattgccttcgaaccttggaaatctggccatgttaaggcatctttatttgatgaactgctatgtcctgaaagatcttcctgatgggatggatggcctcgtttcccttaaaattttggagattcaggcatgtgcagagatagaggaattcccacagggtctcctccagcgacttccaacactgaaagaactgtccatacaagggtgccctggattggaaacacggtgcagagaaggtggtgagtattttgatcttgtctcttccgttcaacgtatatgcattccagcagcagcgaaaacagaaatggaggaggaatcaaggtctggaatctaa
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| Protein seq | MRKLLHLYLLGCDSLVRMPPNFGLLNNLRTLTTFVLDTKAGCGIDELKNLRHIANRLELYNLRKINCRNNGIEANLHQKENLSELLLHWGRDKIYTPENNAYNEEEVLESLTPHGKLKILELHGYSGLKIPQWMRDPQMLQCLTTLRISNCLGCKDLSTLWLSVSLEHLQLSRMDNLTTLCKNVGVGAEGYTIPQQVFPKLKSLKLELLFSLEKWAENTAGEAKNLVTFPELEMLQIIRCSKLASVPDCPVLKELDRFGSYMLAMNELTHLTSLSKLNYVANSLCDCVSMPLGSWPSLVELVLRSSTHIPTTLQVEANQGQLEYLRSLSLVNCFTAASGSSEMRLGLWKCFAFVEVLHIHMCLSLVCWPTEELTSLIHLRHLYIEHCHRLEGKGSSSEEKFMSLSHLERLHIQNCYNLLEIPMLPASLQDLRLESCRRLVALPSNLGNLAMLRHLYLMNCYVLKDLPDGMDGLVSLKILEIQACAEIEEFPQGLLQRLPTLKELSIQGCPGLETRCREGGEYFDLVSSVQRICIPAAAKTEMEEESRSGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0543050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0543050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024080 | SBH | 0.0 | 0.565423 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023880 | SBH | 0.0 | 0.0 | 0.137488 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023880 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024230 | SBH | 0.031484 | 0.016152 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023900 | SBH | 12.274771 | 16.389172 | 32.021706 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0432000 | RBH | 0.012046 | 0.1099305 | 0.01926 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023710 | SBH | 0.027030 | 0.921577 | 0.042268 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0452100 | SBH | 0.422343 | 14.9052035 | 0.1640685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023280 | RBH | 3.043581 | 5.510665 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023360 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023560 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023760 | SBH | 0.944427 | 39.552750 | 18.795977 |
