Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0023880 | OGI:08077360 | 10/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:27255030-27256783 | ||||||||
| Gene Symbol | PIC27 | ||||||||||
| DNA seq | tcagctgttctgcttaccatctaactgcagctccttggtgcctctggttgaagcaggtgggcatgcctgccttcttgtgctgtcacttcctatatcatctgcacctaacgttgaatctctataccaacctttcgctgtcgatggtgcacggcgtgtcaatattgttccagtttaaatttccaaaaaaaaaaagttccagttttgatcagattcttcagtgcattgcaagggagctcaggtttcatcactttcttgagtgcacttgtactactaccttggcttacatagcatctgtcagagtgtaacttggtgcatttctacttgaagtagaagctgtaggtgcagttgcagcaactggtttctggtgtctgctcattatggctgcgtaagttgacctcttctcattggagatggacgatggagctggagcccctctatatatgtttttctttgatgaagagtcaggtgttggtaacattgatctcagtaatgtttttgttgcccctgtctttcctgagagctgccagggataataccaagatcaagagaagttctttgatgaacaaatacattctagaaatgtgtattgcaattgaggaagaaaattggcatctaggatctttagcattcagtatagaagactacagagcagatagtatataccctggaagctgaaggtttgactggccgagagattggtaactccttctggaaagccatttgacaggagttattttcggccaacccagcaaaaaaaaaaaaagagaggtgttggtttccatctctatggaaggaaacagtggtgaagctggaggtgtcttcagcctgaaacaatctgttcttctaagaaacagttccaacaacaaaaggatacgatctagagtgaattatatcctaccacaatcattattctcacactttgacaataatggaagaagaagcatggaaacaattctggacctttgcatggtgacaagagtgagataatggaagagcaaagcgtatgcacctcatttgagagtcagcaggaggggatgagcctttttacaagcttcttcaggttagattccagaccttgattcctcctccatttctgttttcgctgctgctggaatgcatatacgttgaacggaagagacaagatcaaaatactcaccaccttctctgcaccgtgtagattgtagcattgggatctccagtagattgtagcagttttgtatgtgtaacctctctagatgggacagtgacatgaatttttcctcggatgatgaaccttttccctcaagtctatgacagtgctcaatatataggtgtcgaaggtgaatcaagctcgtcaactcctcagttggccagcacacaagactgaggcacatatgaatatgcaatacctccacaaaggcaaagcatttccagagctcaagaagcatttcggatgagccggatgcagccgtgaagcagtttactagactcaaactccgaaggtattctagctggccttgatttgcctccacctgcagagtggttggaatgtgtgttgaagatctaagaactagttctacgagagatggccatgagcccaaaggcatgctcaaacaatcacaaagactgtttgcaacgtaattgagcttggacaatgatgtcagatgtgtgagttcgttcattgcaagcatataagatccaaatctgtccagttcttttagaaccggacagtctgggacacttgcaagtttactacagcgaatgatctgtagcat
More
|
||||||||||
| CDS seq | atgctacagatcattcgctgtagtaaacttgcaagtgtcccagactgtccggttctaaaagaactggacagatttggatcttatatgcttgcaatgaacgaactcacacatctgacatcattgtccaagctcaattacgttgcaaacagtctttgtgattgtttgagcatgcctttgggctcatggccatctctcgtagaactagttcttagatcttcaacacacattccaaccactctgcaggtggaggcaaatcaaggccagctagaataccttcggagtttgagtctagtaaactgcttcacggctgcatccggctcatccgaaatgcttcttgagctctggaaatgctttgcctttgtggaggtattgcatattcatatgtgcctcagtcttgtgtgctggccaactgaggagttgacgagcttgattcaccttcgacacctatatattgagcactgtcatagacttgagggaaaaggttcatcatccgaggaaaaattcatgtcactgtcccatctagagaggttacacatacaaaactgctacaatctactggagatcccaatgctacaatctacacggtgcagagaaggtggtgagtattttgatcttgtctcttccgttcaacgtatatgcattccagcagcagcgaaaacagaaatggaggaggaatcaagattgtttcaggctgaagacacctccagcttcaccactgtttccttccatagagatggaaaccaacacctctctttttttttttttgctgggttggccgaaaataactcctgtcaaatggctttccagaaggagttaccaatctctcggccagtcaaaccttcagcttccaggctctcaggaaagacaggggcaacaaaaacattactgagatcaatgttaccaacacctgactcttcatcaaagaaaaacatatatagaggggctccagctccatcgtccatctccaatgagaagaggtcaacttacgcagccataatgagcagacaccagaaaccagttgctgcaactgcacctacagcttctacttcaagtagaaatgcaccaagttacactctgacagatgctatagattcaacgttaggtgcagatgatataggaagtgacagcacaagaaggcaggcatgcccacctgcttcaaccagaggcaccaaggagctgcagttagatggtaagcagaacagctga
More
|
||||||||||
| Protein seq | MLQIIRCSKLASVPDCPVLKELDRFGSYMLAMNELTHLTSLSKLNYVANSLCDCLSMPLGSWPSLVELVLRSSTHIPTTLQVEANQGQLEYLRSLSLVNCFTAASGSSEMLLELWKCFAFVEVLHIHMCLSLVCWPTEELTSLIHLRHLYIEHCHRLEGKGSSSEEKFMSLSHLERLHIQNCYNLLEIPMLQSTRCREGGEYFDLVSSVQRICIPAAAKTEMEEESRLFQAEDTSSFTTVSFHRDGNQHLSFFFFAGLAENNSCQMAFQKELPISRPVKPSASRLSGKTGATKTLLRSMLPTPDSSSKKNIYRGAPAPSSISNEKRSTYAAIMSRHQKPVAATAPTASTSSRNAPSYTLTDAIDSTLGADDIGSDSTRRQACPPASTRGTKELQLDGKQNS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0023880 | OsCMeo_08g0023880.01 | Chr08 | 27255030 | 27256783 | - | NAM | ||
| CDS seq | atgctacagatcattcgctgtagtaaacttgcaagtgtcccagactgtccggttctaaaagaactggacagatttggatcttatatgcttgcaatgaacgaactcacacatctgacatcattgtccaagctcaattacgttgcaaacagtctttgtgattgtttgagcatgcctttgggctcatggccatctctcgtagaactagttcttagatcttcaacacacattccaaccactctgcaggtggaggcaaatcaaggccagctagaataccttcggagtttgagtctagtaaactgcttcacggctgcatccggctcatccgaaatgcttcttgagctctggaaatgctttgcctttgtggaggtattgcatattcatatgtgcctcagtcttgtgtgctggccaactgaggagttgacgagcttgattcaccttcgacacctatatattgagcactgtcatagacttgagggaaaaggttcatcatccgaggaaaaattcatgtcactgtcccatctagagaggttacacatacaaaactgctacaatctactggagatcccaatgctacaatctacacggtgcagagaaggtggtgagtattttgatcttgtctcttccgttcaacgtatatgcattccagcagcagcgaaaacagaaatggaggaggaatcaagattgtttcaggctgaagacacctccagcttcaccactgtttccttccatagagatggaaaccaacacctctctttttttttttttgctgggttggccgaaaataactcctgtcaaatggctttccagaaggagttaccaatctctcggccagtcaaaccttcagcttccaggctctcaggaaagacaggggcaacaaaaacattactgagatcaatgttaccaacacctgactcttcatcaaagaaaaacatatatagaggggctccagctccatcgtccatctccaatgagaagaggtcaacttacgcagccataatgagcagacaccagaaaccagttgctgcaactgcacctacagcttctacttcaagtagaaatgcaccaagttacactctgacagatgctatagattcaacgttaggtgcagatgatataggaagtgacagcacaagaaggcaggcatgcccacctgcttcaaccagaggcaccaaggagctgcagttagatggtaagcagaacagctga
More
|
|||||||
| Protein seq | MLQIIRCSKLASVPDCPVLKELDRFGSYMLAMNELTHLTSLSKLNYVANSLCDCLSMPLGSWPSLVELVLRSSTHIPTTLQVEANQGQLEYLRSLSLVNCFTAASGSSEMLLELWKCFAFVEVLHIHMCLSLVCWPTEELTSLIHLRHLYIEHCHRLEGKGSSSEEKFMSLSHLERLHIQNCYNLLEIPMLQSTRCREGGEYFDLVSSVQRICIPAAAKTEMEEESRLFQAEDTSSFTTVSFHRDGNQHLSFFFFAGLAENNSCQMAFQKELPISRPVKPSASRLSGKTGATKTLLRSMLPTPDSSSKKNIYRGAPAPSSISNEKRSTYAAIMSRHQKPVAATAPTASTSSRNAPSYTLTDAIDSTLGADDIGSDSTRRQACPPASTRGTKELQLDGKQNS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0543050 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0543050 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024080 | SBH | 0.0 | 0.565423 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023880 | SBH | 0.0 | 0.0 | 0.137488 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017040 | SBH | 0.000000 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023850 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0432000 | SBH | 0.012046 | 0.1099305 | 0.01926 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023710 | SBH | 0.027030 | 0.921577 | 0.042268 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0452100 | SBH | 0.422343 | 14.9052035 | 0.1640685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024120 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023350 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023550 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023720 | RBH | 0.0 | 0.0 | 0.0 |
