Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0017040 | OGI:09059090 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:20315032-20316672 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctctggatagaatggtgataTttctgtttcacttctttgcaaggcttccaagcctttgtccatgctccttctcagcaactgctcttctccttccatttgtagtagcttcagtggcacggctgccattgccaggagcaggctcacctccagttcttctccttcctttccctgcaactttgttaagctcattgttgctacccactgttgcagcaggtgggcatggcattcttcttgctgtgccagcatccattttcagatccttcataccaattgcgggatctttggaccgagctttcggtgcagtcgctgtggttttcttcagcggcttgtcggggattcctagtttggccattttgtttactgcatttgtgctgcctgggaattcaggcttcttgctggctgaggTtttcttggctgctttgctggctgctgtacttttagttgttggagctgcaagttgttgtatgttcttcagaggagtgtagcttgatctcttgtccattttgtaagctgtggtcacttcagagagagcaggatctcctttggtgaagTttttctttgatgaagagctactggatcttgccgtcggagtagcagactttgaggagctggaggtaggcgattcagttcttgttgatgtgcttgttggttcaggcttgattgagaactgttgaagtttcagaatgtcacagtaatatcaaggaaaacggaggatcattttgcaaaggaaatcttttactgcttctacgaaaatcagattattaTttttaattctggtttggacaattcaggaattattctgaacatgttaaatgtaacagtttcagataatattatcataccaaaagattaatttaatggttcttttaacttgtgaatggtaaattacagtcaattagtagtgcagatagttgtcatacccttgaagttttaactggctgaaggataggcaattctctctgaaaaaccatttgagaggaattagcttccatctcgagggaagggaacagtggagtagctggaggagtcttgagcctgaaattatctgatattattcgagaacacaatggaaagactaggtgcatcttaaacactgagcaaattttactgttaccagtcgtaatcgtgctttccaccatctggtaggaggtaatctttcttgcctgatggtaacttgaacatacgactggttcctatattcggtcaaccaaagtaggtaataagtccaatcagtttatccatcttccaagcaaaaaagggTtttttccccccaataatttcatcagcatctactgaaattgctgcgtcgataacttgagatctcatttactctagtgaaaatatcataacaaccctacctaacatgttagctctaggcactggtgatagaataaagcaagaaaattggttgcacctccatgccagcatgaacaggttaaggactcaaaagacaaggcaaaactctcaccttgaattgcttcgaactccactgagtacattggttcaaggaggttcacatccttctccttctcatgcctgtacagctcaccaaagagaaccaagctctcgtcttcgtttttctgagccggaacagctgataatcccttagccatgccagtaactctcttcaggcgatccat
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| CDS seq | atggatcgcctgaagagagttactggcatggctaagggattatcagctgttccggctcagaaaaacgaagacgagagcttggttctctttggtgagctgtacaggcatgagaaggagaaggatgtgaacctccttgaaccaatgtactcagtggagttcgaagcaattcaaggaaccagtcgtatgttcaagttaccatcaggcaagaaagattacctcctaccagatggtggaaagcacgattacgactggctcaagactcctccagctactccactgttcccttccctcgagatggaagctaattcctctcaaatggtttttcagagagaattgcctatccttcagccagttaaaacttcaaggttctcaatcaagcctgaaccaacaagcacatcaacaagaactgaatcgcctacctccagctcctcaaagtctgctactccgacggcaagatccagtagctcttcatcaaagaaaaActtcaccaaaggagatcctgctctctctgaagtgaccacagcttacaaaatggacaagagatcaagctacactcctctgaagaacatacaacaacttgcagctccaacaactaaaagtacagcagccagcaaagcagccaagaaaAcctcagccagcaagaagcctgaattcccaggcagcacaaatgcagtaaacaaaatggccaaactaggaatccccgacaagccgctgaagaaaaccacagcgactgcaccgaaagctcggtccaaagatcccgcaattggtatgaaggatctgaaaatggatgctggcacagcaagaagaatgccatgcccacctgctgcaacagtgggtagcaacaatgagcttaacaaagttgcagggaaaggaaggagaagaactggaggtgagcctgctcctggcaatggcagccgtgccactgaagctactacaaatggaaggagaagagcagttgctgagaaggagcatggacaaaggcttggaagccttgcaaagaagtga
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| Protein seq | MDRLKRVTGMAKGLSAVPAQKNEDESLVLFGELYRHEKEKDVNLLEPMYSVEFEAIQGTSRMFKLPSGKKDYLLPDGGKHDYDWLKTPPATPLFPSLEMEANSSQMVFQRELPILQPVKTSRFSIKPEPTSTSTRTESPTSSSSKSATPTARSSSSSSKKNFTKGDPALSEVTTAYKMDKRSSYTPLKNIQQLAAPTTKSTAASKAAKKTSASKKPEFPGSTNAVNKMAKLGIPDKPLKKTTATAPKARSKDPAIGMKDLKMDAGTARRMPCPPAATVGSNNELNKVAGKGRRRTGGEPAPGNGSRATEATTNGRRRAVAEKEHGQRLGSLAKK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0017040 | OsCMeo_09g0017040.01 | Chr09 | 20315032 | 20316672 | - | NAM | ||
| CDS seq | atggatcgcctgaagagagttactggcatggctaagggattatcagctgttccggctcagaaaaacgaagacgagagcttggttctctttggtgagctgtacaggcatgagaaggagaaggatgtgaacctccttgaaccaatgtactcagtggagttcgaagcaattcaaggaaccagtcgtatgttcaagttaccatcaggcaagaaagattacctcctaccagatggtggaaagcacgattacgactggctcaagactcctccagctactccactgttcccttccctcgagatggaagctaattcctctcaaatggtttttcagagagaattgcctatccttcagccagttaaaacttcaaggttctcaatcaagcctgaaccaacaagcacatcaacaagaactgaatcgcctacctccagctcctcaaagtctgctactccgacggcaagatccagtagctcttcatcaaagaaaaActtcaccaaaggagatcctgctctctctgaagtgaccacagcttacaaaatggacaagagatcaagctacactcctctgaagaacatacaacaacttgcagctccaacaactaaaagtacagcagccagcaaagcagccaagaaaAcctcagccagcaagaagcctgaattcccaggcagcacaaatgcagtaaacaaaatggccaaactaggaatccccgacaagccgctgaagaaaaccacagcgactgcaccgaaagctcggtccaaagatcccgcaattggtatgaaggatctgaaaatggatgctggcacagcaagaagaatgccatgcccacctgctgcaacagtgggtagcaacaatgagcttaacaaagttgcagggaaaggaaggagaagaactggaggtgagcctgctcctggcaatggcagccgtgccactgaagctactacaaatggaaggagaagagcagttgctgagaaggagcatggacaaaggcttggaagccttgcaaagaagtga
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| Protein seq | MDRLKRVTGMAKGLSAVPAQKNEDESLVLFGELYRHEKEKDVNLLEPMYSVEFEAIQGTSRMFKLPSGKKDYLLPDGGKHDYDWLKTPPATPLFPSLEMEANSSQMVFQRELPILQPVKTSRFSIKPEPTSTSTRTESPTSSSSKSATPTARSSSSSSKKNFTKGDPALSEVTTAYKMDKRSSYTPLKNIQQLAAPTTKSTAASKAAKKTSASKKPEFPGSTNAVNKMAKLGIPDKPLKKTTATAPKARSKDPAIGMKDLKMDAGTARRMPCPPAATVGSNNELNKVAGKGRRRTGGEPAPGNGSRATEATTNGRRRAVAEKEHGQRLGSLAKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0518600 | RBH | 0.392830 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34290 | RBH | 0.326290 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0518600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016810 | RBH | 0.0 | 2.392246 | 0.394733 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016820 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023870 | RBH | 0.0 | 0.0 | 0.652955 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016960 | RBH | 0.0 | 0.0 | 2.183530 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0339800 | RBH | 0.907235 | 3.63942 | 6.103017 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016810 | RBH | 0.066764 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0327800 | RBH | 1.1880545 | 1.4295445 | 4.970548 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016810 | RBH | 0.000000 | 0.117514 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016570 | RBH | 0.000000 | 0.0 | 0.439381 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016690 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017120 | RBH | 0.0 | 0.0 | 0.343176 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016950 | RBH | 0.0 | 1.493664 | 0.0 |
