Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_09g0518600 | OGI:09059090 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:20241489-20243398 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TCACTTCTTTGCAAGGCTTCCAAGCCTTTGTCCATGCTCCTTCTCAGCAACTGCTCTTCTCCTTCCATTTGTAGTAGCTTCAGTGGCACGGCTGCCATTGCCAGGAGCAGGCTCACCTCCAGTTCTTCTCCTTCCTTTCCCTGCAACTTTGTTAAGCTCATTGTTGCTACCCACTGTTGCAGCAGGTGGGCATGGCATTCTTCTTGCTGTGCCAGCATCCATTTTCAGATCCTTCATACCAATTGCGGGATCTTTGGACCGAGCTTTCGGTGCAGTCGCTGTGGTTTTCTTCAGCGGCTTGTCGGGGATTCCTAGTTTGGCCATTTTGTTTACTGCATTTGTGCTGCCTGGGAATTCAGGCTTCTTGCTGGCTGAGGTTTTCTTGGCTGCTTTGCTGGCTGCTGTACTTTTAGTTGTTGGAGCTGCAAGTTGTTGTATGTTCTTCAGAGGAGTGTAGCTTGATCTCTTGTCCATTTTGTAAGCTGTGGTCACTTCAGAGAGAGCAGGATCTCCTTTGGTGAAGTTTTTCTTTGATGAAGAGCTACTGGATCTTGCCGTCGGAGTAGCAGACTTTGAGGAGCTGGAGGTAGGCGATTCAGTTCTTGTTGATGTGCTTGTTGGTTCAGGCTTGATTGAGAACTGTTGAAGTTTCAGAATGTCACAGTAATATCAAGGAAAACGGAGGATCATTTTGCAAAGGAAATCTTTTACTGCTTCTACGAAAATCAGATTATTATTTTTAATTCTGGTTTGGACAATTCAGGAATTATTCTGAACATGTTAAATGTAACAGTTTCAGATAATATTATCATACCAAAAGATTAATTTAATGGTTCTTTTAACTTGTGAATGGTAAATTACAGTCAATTAGTAGTGCAGATAGTTGTCATACCCTTGAAGTTTTAACTGGCTGAAGGATAGGCAATTCTCTCTGAAAAACCATTTGAGAGGAATTAGCTTCCATCTCGAGGGAAGGGAACAGTGGAGTAGCTGGAGGAGTCTTGAGCCTGAAATTATCTGATATTATTCGAGAACACAATGGAAAGACTAGGTGCATCTTAAACACTGAGCAAATTTTACTGTTACCAGTCGTAATCGTGCTTTCCACCATCTGGTAGGAGGTAATCTTTCTTGCCTGATGGTAACTTGAACATACGACTGGTTCCTATATTCGGTCAACCAAAGTAGGTAATAAGTCCAATCAGTTTATCCATCTTCCAAGCAAAAAAGGGTTTTTTCCCCCCAATAATTTCATCAGCATCTACTGAAATTGCTGCGTCGATAACTTGAGATCTCATTTACTCTAGTGAAAATATCATAACAACCCTACCTAACATGTTAGCTCTAGGCACTGGTGATAGAATAAAGCAAGAAAATTGGTTGCACCTCCATGCCAGCATGAACAGGTTAAGGACTCAAAAGACAAGGCAAAACTCTCACCTTGAATTGCTTCGAACTCCACTGAGTACATTGGTTCAAGGAGGTTCACATCCTTCTCCTTCTCATGCCTGTACAGCTCACCAAAGAGAACCAAGCTCTCGTCTTCGTTTTTCTGAGCCGGAACAGCTGATAATCCCTTAGCCATGCCAGTAACTCTCTTCAGGCGATCCATACTTCAGGAAAGGCTGCAGAAACAATGGAGGTGGTCAGATGCAGGTAGAGCAGAGCATATATCACCCTATGGCAGAAAAGGTTACCTGAATACTCCAAGGACAAAAATGTGCTGGCAATCCTGAAACCATCCCTGGAGCTAAACACAATGCATACAAATGTAACAAAAATGTCAGTGAAAAGGACAGGCACATGAAACCAAACAGAAAAATATTGTTAAGAGTGGATGATCCATTTGGTGCAATATTACAGTGTTTCTTTCTCCTTGGCCTCCATATGGCACAAAAAGGTTCAGTTCT
More
|
||||||||||
CDS seq | ATGGATCGCCTGAAGAGAGTTACTGGCATGGCTAAGGGATTATCAGCTGTTCCGGCTCAGAAAAACGAAGACGAGAGCTTGGTTCTCTTTGGTGAGCTGTACAGGCATGAGAAGGAGAAGGATGTGAACCTCCTTGAACCAATGTACTCAGTGGAGTTCGAAGCAATTCAAGGAACCAGTCGTATGTTCAAGTTACCATCAGGCAAGAAAGATTACCTCCTACCAGATGGTGGAAAGCACGATTACGACTGGCTCAAGACTCCTCCAGCTACTCCACTGTTCCCTTCCCTCGAGATGGAAGCTAATTCCTCTCAAATGGTTTTTCAGAGAGAATTGCCTATCCTTCAGCCAGTTAAAACTTCAAGGTTCTCAATCAAGCCTGAACCAACAAGCACATCAACAAGAACTGAATCGCCTACCTCCAGCTCCTCAAAGTCTGCTACTCCGACGGCAAGATCCAGTAGCTCTTCATCAAAGAAAAACTTCACCAAAGGAGATCCTGCTCTCTCTGAAGTGACCACAGCTTACAAAATGGACAAGAGATCAAGCTACACTCCTCTGAAGAACATACAACAACTTGCAGCTCCAACAACTAAAAGTACAGCAGCCAGCAAAGCAGCCAAGAAAACCTCAGCCAGCAAGAAGCCTGAATTCCCAGGCAGCACAAATGCAGTAAACAAAATGGCCAAACTAGGAATCCCCGACAAGCCGCTGAAGAAAACCACAGCGACTGCACCGAAAGCTCGGTCCAAAGATCCCGCAATTGGTATGAAGGATCTGAAAATGGATGCTGGCACAGCAAGAAGAATGCCATGCCCACCTGCTGCAACAGTGGGTAGCAACAATGAGCTTAACAAAGTTGCAGGGAAAGGAAGGAGAAGAACTGGAGGTGAGCCTGCTCCTGGCAATGGCAGCCGTGCCACTGAAGCTACTACAAATGGAAGGAGAAGAGCAGTTGCTGAGAAGGAGCATGGACAAAGGCTTGGAAGCCTTGCAAAGAAGTGA
More
|
||||||||||
Protein seq | MDRLKRVTGMAKGLSAVPAQKNEDESLVLFGELYRHEKEKDVNLLEPMYSVEFEAIQGTSRMFKLPSGKKDYLLPDGGKHDYDWLKTPPATPLFPSLEMEANSSQMVFQRELPILQPVKTSRFSIKPEPTSTSTRTESPTSSSSKSATPTARSSSSSSKKNFTKGDPALSEVTTAYKMDKRSSYTPLKNIQQLAAPTTKSTAASKAAKKTSASKKPEFPGSTNAVNKMAKLGIPDKPLKKTTATAPKARSKDPAIGMKDLKMDAGTARRMPCPPAATVGSNNELNKVAGKGRRRTGGEPAPGNGSRATEATTNGRRRAVAEKEHGQRLGSLAKK |
||||||||||
Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_09g0518600 | OsNip_09t0518600-00 | Chr09 | 20241489 | 20243398 | - | RAP2018-11-26 | ||
CDS seq | ATGGATCGCCTGAAGAGAGTTACTGGCATGGCTAAGGGATTATCAGCTGTTCCGGCTCAGAAAAACGAAGACGAGAGCTTGGTTCTCTTTGGTGAGCTGTACAGGCATGAGAAGGAGAAGGATGTGAACCTCCTTGAACCAATGTACTCAGTGGAGTTCGAAGCAATTCAAGGAACCAGTCGTATGTTCAAGTTACCATCAGGCAAGAAAGATTACCTCCTACCAGATGGTGGAAAGCACGATTACGACTGGCTCAAGACTCCTCCAGCTACTCCACTGTTCCCTTCCCTCGAGATGGAAGCTAATTCCTCTCAAATGGTTTTTCAGAGAGAATTGCCTATCCTTCAGCCAGTTAAAACTTCAAGGTTCTCAATCAAGCCTGAACCAACAAGCACATCAACAAGAACTGAATCGCCTACCTCCAGCTCCTCAAAGTCTGCTACTCCGACGGCAAGATCCAGTAGCTCTTCATCAAAGAAAAACTTCACCAAAGGAGATCCTGCTCTCTCTGAAGTGACCACAGCTTACAAAATGGACAAGAGATCAAGCTACACTCCTCTGAAGAACATACAACAACTTGCAGCTCCAACAACTAAAAGTACAGCAGCCAGCAAAGCAGCCAAGAAAACCTCAGCCAGCAAGAAGCCTGAATTCCCAGGCAGCACAAATGCAGTAAACAAAATGGCCAAACTAGGAATCCCCGACAAGCCGCTGAAGAAAACCACAGCGACTGCACCGAAAGCTCGGTCCAAAGATCCCGCAATTGGTATGAAGGATCTGAAAATGGATGCTGGCACAGCAAGAAGAATGCCATGCCCACCTGCTGCAACAGTGGGTAGCAACAATGAGCTTAACAAAGTTGCAGGGAAAGGAAGGAGAAGAACTGGAGGTGAGCCTGCTCCTGGCAATGGCAGCCGTGCCACTGAAGCTACTACAAATGGAAGGAGAAGAGCAGTTGCTGAGAAGGAGCATGGACAAAGGCTTGGAAGCCTTGCAAAGAAGTGA
More
|
|||||||
Protein seq | MDRLKRVTGMAKGLSAVPAQKNEDESLVLFGELYRHEKEKDVNLLEPMYSVEFEAIQGTSRMFKLPSGKKDYLLPDGGKHDYDWLKTPPATPLFPSLEMEANSSQMVFQRELPILQPVKTSRFSIKPEPTSTSTRTESPTSSSSKSATPTARSSSSSSKKNFTKGDPALSEVTTAYKMDKRSSYTPLKNIQQLAAPTTKSTAASKAAKKTSASKKPEFPGSTNAVNKMAKLGIPDKPLKKTTATAPKARSKDPAIGMKDLKMDAGTARRMPCPPAATVGSNNELNKVAGKGRRRTGGEPAPGNGSRATEATTNGRRRAVAEKEHGQRLGSLAKK
More
|
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.392830 | 0.0 | 0.000000 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0543000 | RBH | 0.0 | 0.000000 | 0.932370 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34290 | RBH | 0.326290 | 0.0 | 0.000000 |
Nipponbare | IRGSP 1.0 | RAP-db | Os09g0518600 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016810 | RBH | 0.0 | 2.392246 | 0.394733 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016820 | RBH | 0.0 | 0.000000 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017040 | RBH | 0.000000 | 0.000000 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016790 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016960 | RBH | 0.0 | 0.0 | 2.183530 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0339800 | RBH | 0.907235 | 3.63942 | 6.103017 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016810 | RBH | 0.066764 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0327800 | RBH | 1.1880545 | 1.4295445 | 4.970548 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016810 | RBH | 0.000000 | 0.117514 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016610 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016690 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016570 | RBH | 0.000000 | 0.0 | 0.439381 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016690 | RBH | 0.0 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017120 | RBH | 0.0 | 0.0 | 0.343176 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016950 | RBH | 0.0 | 1.493664 | 0.0 |