Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_08g0016310 | OGI:08059610 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr08:21541711-21547085 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagcgaaatataaaacccccacaaatttgagtcaagaactgcaaaatgcatactacattctcgatgataacacactcagcattacattgcttattacatgctcgcaaacggcaagctcttggagtatctttcttacaaaaacaacgaaaagaaaggaaaaaaaataaaagtacaacaattccttctgcgcataagccatcctgccacacttggagggctcccaaaatcgccaaggcatcgttaacataaagctgcatattgtaggcggaacagccaccaaactgttcccctgggggcaaatcgtgacagcctgacttcaaatccaaatgcccacctggaattagccttcatatcagactcaaatgagcaccaaaaggatttggcagctatgaaaatttttgttaggtcacacgagtggcgaggcagtgcactgtactggtatggccaccaatcgctgacattgtacagttgtagtcaagtcaccattagtcctgccggatgacaattctcgtttccattcagtagacgcgatcccgtttcctggtcatgcctcggctctttggtgatggcgctttaccgaagctacccaacctcatcactattggagttcacaaatggaatgagcaagataagcatctgtaagtcactgataattcatgttaatattgagaggaaaatgcttttcatttacctctcccgatctcaagttcttggtctaactcttctttccacttcttctgtctttcagaaaagctaatgctgAaaaaaaaataacgggtaaataactcacatgagtgaaaacaccataattaaattgaccaaaaggtgagcacttttgcaagagaataagtgaattcagtcttttgtagcataactgtaaagtgatagctgtctcatgtataatttcatatccaaagcaatctactccaaacaaacctgggattttcttgaatatcgtggaccttgtcctcaaacttattgagttgaggcgaagcaatttctcttaaaattcgaccattctccacaccgcttcttgagaaacgcctagtgcagctctttggactggcactcttcagaacatcgctGgttggtcctactgctgcaactccctccatctgaattggaggtgatcttccttgaaggggcaattgcaaatcagtaatgttgtctacttggcaagtttcaccaactccttgagaaagtccagcatttactgtgttgtagaactcatacaaaggtgtctgtagtttctttagatctatggcctgttaagtgcaaaagtaaacaatagtagattaagaacaactggacatgcagcagaagggattgctgcctcaaagcatgaaaaataccttttcatccagaaattcctttaTttttgattctgtgagttcatcatcctcttcacagcctccctcacatgggaaagtaaaatcattttcagacatgttattttcaacatgtttggctaatcctccgaattcccttgattgactagatctttgttctgggctttcccagtcatcaaatggttcagacatagggttgaagctctggaaatgacattacgtaactataagtataccatgtaggaatacaaaatacgcatttcttatgtgacttgtgtacgaactaaaacataaggctaaagtagtcaggactaggtacggatacttaccgatccaatcattaccacgtcattgtcagcaaactgacacatgtcatcactgttgtgcccatcccatattggtctcacgtctgatgacttataggaattcaagttacttgggttgccagaatgattcaagcccctacaagttgaagaatttgttcaatcaaactgaagatgaacgatctgcctggctcaagattgcaaggtacttacaggtcaccagttagcatatcgtatgccggaagctcagaggtttcctgtgagtacatcattttgtaagagtaacattttgggataaatagacaagtaaaaggatttattgtaatccaaccttgtgtgctgcatgattaacctggtgaagatcttccaatcctcctgtaacaaatgggtgctggAaaaaaaatgttttaaggtattactcttcacaaagtacataacatatccttacagcaagaggacttccccaacagctaaaatgccgagagagagaaagagagtttattataccagcaataagtctgatgcagtagatctcagttctggttccctgaaaggagtaacaaaatgctgaaggcaatgaagtaacatttactaattataatatccaaatgcaggaaaatgtgccatttgaagcttgattctcatcatttctagataaactttacaaatgataattgcacaacaaatgccactgaattgcagctgttaattggaaacgcatacacaaaactacacagacaaaaatcacgcagtgtgaagaagataggaatcaggcaaacagcacaagttacacatacaaatctagaattcgttactcttattatgtaatcaggtaataacaatggaacgaaatgaaactattcatactgaaatacatggagcacaaagttgtacataaacatggctcactggaagtaggctaccacaagaatatataaagctatcgcgctgttaggatgcatgtaatgcagttcattatcagatggatgccaccttcaattttcaaaacttcaaatacagagagagcgatttatttccacatatgtaattctaggtatgactcacagcgcataagagcgctcaatgtttaacaacagctatgcAaaaaaactgagttagcacaaccaaactatttctcagtttctcttactagattgtctgaatcgatttttccacttctttgtggtgaaaattctaaacttttataggtcccattgtcaattttgctgcaataatcaacatctattcaaaagtgtgattgtagtcatacttctgtaagcattttaacagaaaatccttggcttctggggaaagatgctctggtattggtggatgtgactttgttgtcccaacataatacagaagagAaacctgaaatagtgattgtcaagaataagcaatgcttataagtttcttggtaaatgctgatgccaaaatttacctcttgaatttcctgattccatggagttttcccagttgccatttcaattacagtgcatccgacactccagatatcagctgaactgcaaagatagttagatgacaaggattaattcaagaaacaaaaccatcatacagtttctggatatggtattgaacagcaagcttggtgaaattttttcaccaatgaaaaggcaacaataaatggggcattggggccagaaaagataataagctaattgtaccatcccttttttttcataggatttttttttgtcctttaagatatttttcacaaaataagtcatttggtggcatgattagccaaaacattagttcacagatattcttattcttaaagaaataagagagccagaggaccacaagcatcactaaggattgagcaacgagcagttaactataacgatgagataaagagcttgtccacttacaagtcatgcccactcccaacaattacttctggggccatccaatatggtgtccctttcattgtcttggcagtggtcgcctgaaaaggtgatagcgtgtgaaagaaaaatataaacacgtggaacgtaacagtagggatgatcccgcatttaaaacacacaagaagcaacagaaccctgtcctatgcagtgatgaagtaagttccagtcttctaccttttcacttttaagtgaaacactagcattctatggataaaaggaaatgcaagataaacctggcatctataaagttaactttagagctaagctaatacatagttgaacaaatgatcaaacgaaattaaaacaattagttcatctactcaccaacttctccacttgcttagatgccccaaagtctgccaacttaatgcatcctttattatcaacaagtatatttgctccctgaatattgaaaaaaaaaacagtaatgccacattagaaatatataacccacacaacaaaagggttcaaggcaacaaaattcgaaattcgaatactcttcatgcctttatgtccctgtgtatgattccattgcgatgtaaatactccaggccatgcaaaatctgtttagtgtatttcctgatgacctgataaataaatgcattcaatcaacacgattcttttgtgattaaccaaactaccgaagacaggatgaacacaacagttagacttacagcctcagggaatgatcccagcctcccaaggagtgactggatcgatcctcctggcacaaactccagcagaatatttaacgagttctcctcccgcaccgttccaatatatcgctgctcaaagcacaccagatagatcaaacaccaccaccgaattgaagaactaaacatatgtggttatttagcattactcacaacaatgttggggtgtgagaggttcttgagtagcttcacttcgtcctcaagctcccttatgtgtccctaacaaaaaaaaaatccaattacaaacacttagagcttagaggaggttaaagaagactatttcaatggcacaattggtcaggaaaataaagatagtaaacaagtaattgagcaaagccactcacttgggccttctccctcgttgcgttgctgctcccgatcagaacctgcaaccagaaagagcagaagggtgatgaaaccagaccaaatcggccgtcgctggaaacttgaagcatcagcatcttggaagaggcctcctgacctgctttacggcgaggagctcgccggaatcaagatccatgccgaggaagaccgacccgaacgcgccgctcccgaggagatcgcccttccgccaccggatcggcgggttctcctcctctcctccgattccacccgcaccgtctcccccttgggacaccaccgcagccgccgccgcaggctgtggcgacagcgacttcgttggcgcggggggcggcgaaggcggcgggggaaggaggcggcggcgcgggggcgaggggctcttggaggccaccatcccgagcagccccatccccctggacttgcggaggcacgtgctgatccgccccctgaaccccccaccgccggaagccgaggcgggctcgtcgagggtggcggccgcggcgctgcccccggggcggaaggagatggagcggcgcaccgagtcgaacagctcctggaaccccccgccgcctccgacagcggcgtcgtcccgccgcatcgccggtggtagtagagccccctcgcgcgcgcgcggtcggtgggatggtcgtcgtcggcggcggcggcggcggcgaggaggagggcgagggtttggatgcg
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| CDS seq | atgcggcgggacgacgccgctgtcggaggcggcggggggttccaggagctgttcgactcggtgcgccgctccatctccttccgccccgggggcagcgccgcggccgccaccctcgacgagcccgcctcggcttccggcggtggggggttcagggggcggatcagcacgtgcctccgcaagtccagggggatggggctgctcgggatggtggcctccaagagcccctcgcccccgcgccgccgcctccttcccccgccgccttcgccgccccccgcgccaacgaagtcgctgtcgccacagcctgcggcggcggctgcggtggtgtcccaagggggagacggtgcgggtggaatcggaggagaggaggagaacccgccgatccggtggcggaagggcgatctcctcgggagcggcgcgttcgggtcggtcttcctcggcatggatcttgattccggcgagctcctcgccgtaaagcaggttctgatcgggagcagcaacgcaacgagggagaaggcccaaggacacataagggagcttgaggacgaagtgaagctactcaagaacctctcacaccccaacattgttcgatatattggaacggtgcgggaggagaactcgttaaatattctgctggagtttgtgccaggaggatcgatccagtcactccttgggaggctgggatcattccctgaggctggagcaaatatacttgttgataataaaggatgcattaagttggcagactttggggcatctaagcaagtggagaagttggcgaccactgccaagacaatgaaagggacaccatattggatggccccagaagtaattgttgggagtgggcatgacttttcagctgatatctggagtgtcggatgcactgtaattgaaatggcaactgggaaaactccatggaatcaggaaattcaagaggttTctcttctgtattatgttgggacaacaaagtcacatccaccaataccagagcatctttccccagaagccaaggattttctgttaaaatgcttacagaaggaaccagaactgagatctactgcatcagacttattgctgcacccatttgttacaggaggattggaagatcttcaccaggttaatcatgcagcacacaaggaaacctctgagcttccggcatacgatatgctaactggtgacctgggcttgaatcattctggcaacccaagtaacttgaattcctataagtcatcagacgtgagaccaatatgggatgggcacaacagtgatgacatgtgtcagtttgctgacaatgacgtggtaatgattggatcgagcttcaaccctatgtctgaaccatttgatgactgggaaagcccagaacaaagatctagtcaatcaagggaattcggaggattagccaaacatgttgaaaataacatgtctgaaaatgattttactttcccatgtgagggaggctgtgaagaggatgatgaactcacagaatcaaaaAtaaaggaatttctggatgaaaaggccatagatctaaagaaactacagacacctttgtatgagttctacaacacagtaaatgctggactttctcaaggagttggtgaaacttgccaagtagacaacattactgatttgcaattgccccttcaaggaagatcacctccaattcagatggagggagttgcagcagtaggaccaacCagcgatgttctgaagagtgccagtccaaagagctgcactaggcgtttctcaagaagcggtgtggagaatggtcgaattttaagagaaattgcttcgcctcaactcaataagtttgaggacaaggtccacgatattcaagaaaatcccagcattagcttttctgaaagacagaagaagtggaaagaagagttagaccaagaacttgagatcgggagagtgatgaggttgggtagcttcggtaaagcgccatcaccaaagagccgaggcatgaccaggaaacgggatcgcgtctactga
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| Protein seq | MRRDDAAVGGGGGFQELFDSVRRSISFRPGGSAAAATLDEPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRRRLLPPPPSPPPAPTKSLSPQPAAAAAVVSQGGDGAGGIGGEEENPPIRWRKGDLLGSGAFGSVFLGMDLDSGELLAVKQVLIGSSNATREKAQGHIRELEDEVKLLKNLSHPNIVRYIGTVREENSLNILLEFVPGGSIQSLLGRLGSFPEAGANILVDNKGCIKLADFGASKQVEKLATTAKTMKGTPYWMAPEVIVGSGHDFSADIWSVGCTVIEMATGKTPWNQEIQEVSLLYYVGTTKSHPPIPEHLSPEAKDFLLKCLQKEPELRSTASDLLLHPFVTGGLEDLHQVNHAAHKETSELPAYDMLTGDLGLNHSGNPSNLNSYKSSDVRPIWDGHNSDDMCQFADNDVVMIGSSFNPMSEPFDDWESPEQRSSQSREFGGLAKHVENNMSENDFTFPCEGGCEEDDELTESKIKEFLDEKAIDLKKLQTPLYEFYNTVNAGLSQGVGETCQVDNITDLQLPLQGRSPPIQMEGVAAVGPTSDVLKSASPKSCTRRFSRSGVENGRILREIASPQLNKFEDKVHDIQENPSISFSERQKKWKEELDQELEIGRVMRLGSFGKAPSPKSRGMTRKRDRVY |
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| Function | Mitogen-activated protein kinase kinase kinase NPK1 [UniProtKB/Swiss-Prot:Q40541] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_08g0016310 | OsPr106_08g0016310.01 | Chr08 | 21541751 | 21547085 | - | NAM | ||
| CDS seq | atgcggcgggacgacgccgctgtcggaggcggcggggggttccaggagctgttcgactcggtgcgccgctccatctccttccgccccgggggcagcgccgcggccgccaccctcgacgagcccgcctcggcttccggcggtggggggttcagggggcggatcagcacgtgcctccgcaagtccagggggatggggctgctcgggatggtggcctccaagagcccctcgcccccgcgccgccgcctccttcccccgccgccttcgccgccccccgcgccaacgaagtcgctgtcgccacagcctgcggcggcggctgcggtggtgtcccaagggggagacggtgcgggtggaatcggaggagaggaggagaacccgccgatccggtggcggaagggcgatctcctcgggagcggcgcgttcgggtcggtcttcctcggcatggatcttgattccggcgagctcctcgccgtaaagcaggttctgatcgggagcagcaacgcaacgagggagaaggcccaaggacacataagggagcttgaggacgaagtgaagctactcaagaacctctcacaccccaacattgttcgatatattggaacggtgcgggaggagaactcgttaaatattctgctggagtttgtgccaggaggatcgatccagtcactccttgggaggctgggatcattccctgaggctggagcaaatatacttgttgataataaaggatgcattaagttggcagactttggggcatctaagcaagtggagaagttggcgaccactgccaagacaatgaaagggacaccatattggatggccccagaagtaattgttgggagtgggcatgacttttcagctgatatctggagtgtcggatgcactgtaattgaaatggcaactgggaaaactccatggaatcaggaaattcaagaggttTctcttctgtattatgttgggacaacaaagtcacatccaccaataccagagcatctttccccagaagccaaggattttctgttaaaatgcttacagaaggaaccagaactgagatctactgcatcagacttattgctgcacccatttgttacaggaggattggaagatcttcaccaggttaatcatgcagcacacaaggaaacctctgagcttccggcatacgatatgctaactggtgacctgggcttgaatcattctggcaacccaagtaacttgaattcctataagtcatcagacgtgagaccaatatgggatgggcacaacagtgatgacatgtgtcagtttgctgacaatgacgtggtaatgattggatcgagcttcaaccctatgtctgaaccatttgatgactgggaaagcccagaacaaagatctagtcaatcaagggaattcggaggattagccaaacatgttgaaaataacatgtctgaaaatgattttactttcccatgtgagggaggctgtgaagaggatgatgaactcacagaatcaaaaAtaaaggaatttctggatgaaaaggccatagatctaaagaaactacagacacctttgtatgagttctacaacacagtaaatgctggactttctcaaggagttggtgaaacttgccaagtagacaacattactgatttgcaattgccccttcaaggaagatcacctccaattcagatggagggagttgcagcagtaggaccaacCagcgatgttctgaagagtgccagtccaaagagctgcactaggcgtttctcaagaagcggtgtggagaatggtcgaattttaagagaaattgcttcgcctcaactcaataagtttgaggacaaggtccacgatattcaagaaaatcccagcattagcttttctgaaagacagaagaagtggaaagaagagttagaccaagaacttgagatcgggagagtgatgaggttgggtagcttcggtaaagcgccatcaccaaagagccgaggcatgaccaggaaacgggatcgcgtctactga
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| Protein seq | MRRDDAAVGGGGGFQELFDSVRRSISFRPGGSAAAATLDEPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRRRLLPPPPSPPPAPTKSLSPQPAAAAAVVSQGGDGAGGIGGEEENPPIRWRKGDLLGSGAFGSVFLGMDLDSGELLAVKQVLIGSSNATREKAQGHIRELEDEVKLLKNLSHPNIVRYIGTVREENSLNILLEFVPGGSIQSLLGRLGSFPEAGANILVDNKGCIKLADFGASKQVEKLATTAKTMKGTPYWMAPEVIVGSGHDFSADIWSVGCTVIEMATGKTPWNQEIQEVSLLYYVGTTKSHPPIPEHLSPEAKDFLLKCLQKEPELRSTASDLLLHPFVTGGLEDLHQVNHAAHKETSELPAYDMLTGDLGLNHSGNPSNLNSYKSSDVRPIWDGHNSDDMCQFADNDVVMIGSSFNPMSEPFDDWESPEQRSSQSREFGGLAKHVENNMSENDFTFPCEGGCEEDDELTESKIKEFLDEKAIDLKKLQTPLYEFYNTVNAGLSQGVGETCQVDNITDLQLPLQGRSPPIQMEGVAAVGPTSDVLKSASPKSCTRRFSRSGVENGRILREIASPQLNKFEDKVHDIQENPSISFSERQKKWKEELDQELEIGRVMRLGSFGKAPSPKSRGMTRKRDRVY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_08g0016310 | OsPr106_08g0016310.02 | Chr08 | 21541711 | 21541931 | - | IsoSeq | ||
| CDS seq | gagccctccaagtgtggcaggatggcttatgcgcagaaggaattgttgtacttttattttttttcctttcttttcgttgtttttgtaagaaagatactccaagagcttgccgtttgcgagcatgtaataagcaatgtaatgctgagtgtgttatcatcgaga |
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| Protein seq | EPSKCGRMAYAQKELLYFYFFSFLFVVFVRKILQELAVCEHVISNVMLSVLSSR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 6.491786 | 3.247617 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0421800 | RBH | 0.0 | 0.0 | 2.263661 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g32600 | RBH | 0.0 | 0.0 | 0.568561 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0421800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016370 | RBH | 0.0 | 8.519660 | 0.170197 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016250 | RBH | 0.0 | 5.824485 | 0.824668 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016180 | RBH | 0.0 | 7.791828 | 0.279289 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016520 | RBH | 0.0 | 0.426338 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008900 | RBH | 0.0 | 11.466290 | 2.287181 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0322800 | RBH | 2.4717025 | 1.944345 | 4.589948 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0016240 | RBH | 0.0 | 0.248693 | 0.242516 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0343700 | RBH | 3.302453 | 0.1921255 | 17.108025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015640 | RBH | 0.0 | 0.059551 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015920 | RBH | 0.0 | 9.236044 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015750 | RBH | 0.0 | 17.336246 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016500 | RBH | 0.0 | 0.849282 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015920 | RBH | 0.0 | 3.880132 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016050 | RBH | 0.0 | 4.951453 | 0.508230 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0016170 | RBH | 0.0 | 6.152308 | 1.369362 |
