Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_07g0010300 | OGI:07030420 | 14/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr07:10840965-10843690 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ataagttcatttagtatgataaaattcgatttgaagtttcaaaattttgaaatttccaagttaaatgaccattttgtccaagtaacttgtataataggtttctagataccagggttattctggtaaaatcgcatcaacatagcttcttatacatatatccaaaccctagccatccattcttcaccttctctttccccaccctcacaccgccgcccaccacgccgtcgtcgtcgtcctcctcccttcgcccaccatccacagccccctcggatctcgccgccccttccgcctccccctccgctcctctcgccgctcttccgtccccccctcttcggcaatctcgccggcgtcccaactccggcgggagcggtggcggcagcaaggaggcgcggcggcaacgacctgcggcggtggattcggcggcgccgtcctagggaaggccggatccgccgccctaggaaggagctcggctctcggcggcgggcggcgggcacggtgacagcctgctccggcggatctggcggcgccgtcacagaggcggaggacagcggcgcgccagagacggaggccccgtcgggcaggccggcagcgaggcggtggcggagccgcggaggcgggccggcgtggatggggtcggtggaggtggcggcgacctggtacggcggcgggagggagtcaatgcgagggggttcaggcgaggctggcggcgtggctcgcaccgtggcggctcctctcctccggcggcaaggtgctcggcgaggaggaaaaggctgccgagaacatctacatcaaggtatatccaccctactcgcttccctaatcttccttccccctcgtgattgttgctgttcttgctgcggtagatgggctacagatgcaactagagatgtattgcttgagctcttcataattcatcaacacttcatgactgttgaaactgaattgcatctatacgttataagtactactcctaacctgtagaattatcaatctatggcaatcaacctcaatgaattatcatctgacctgcaagcagaatgagaaaccaatataatatcatatagctgtaagacatgatcttttgaacaagagacttgcattatgtagtgttttatttatccatcacttgagcagttttcacaattcctatatatcgaatggtaaactctacttcaacgtactttcagaaaatatgaaatatataaatgttaacagtaagatgaaatcaaaagtactaatctccaatagtccatatatatctggatcatatccacctgaaataaaagattaccacttttttatgtactgcaatttgtaattagcaattaaacatgtgcatgctgcaaaaatattctacaaaaacaggactagccatctttccttttccttttaacaaacagtaatagcaaactatcagtaaacagagaacatctacatcaaggtatatccaccctactcgcttccctaatcttccttccccctcgtgattgttgctgttcttgctgcggtagatgggctacagatgcaactagagatgtattggtgtgctgtgtagaggttttggatgtgctccaaattgaaatgaggctgtttttcctgtgcgaattgctgagtttgcttcaactttcatccttcccatggtcacttttggtgagttcctatgagtcccatggtcacctttttttagaaagtaataagtgaaatcctattatgaatgtcaaatctgatgactccttttatcttattcatgtaaaaaggattggttgccaccatatgtggtgctcaggaatgtcaaaattgtaggggcatgtttcttcctaacatgtgaagtggttttttttggctatctagcaaacttgtggctgtgctttctcatgttatactatgctaagcagttgcattgcagtttaagatgtcttagtttatacccaatttttggaaatttgtgagcatgatgtcagtcttttccttttaaattaagggataataggaagaaaccagggctggcagttctttttgtttaccaatttttccactgtacaagtgcaaaagcatttcaatatcttttcagagttcacggaagaactgggctatttatttggtagcaggacaggaagtagggttgtttttttcacctataactgttactttagtaaggaaatttgagggtgcctctccctcatgcgtgaaaaccattatttccacagtgaaaaggggtaaatatatatatattgttttgcctgatctctgagcatgcttagtttctttgttacaaaatgctgaactgagatgaactgaaaatttcagaaatgtgcgatgtgcaggtggagataacatacagagggagacagctcctcccaatcctgacattgcagcatgtccgtgacatcagtaactgcatgaatattttttattcatctattaactgcttgaacagtagaagaaactaggatgatatggcagttattgatgttttatcttgtgcatatgcagtgctgctaagctcacttggaagatcttggtcatgcgacatctggtgaaattttggttactgtgattgtatctggaatgtgactagatttggctgttaactgtgttgtaaattttgtgttgtattggatgtttgtcgagatgtgttggtttgaatctgagattgtatgatagattggattgaatttggtgggctcaaatttagtgggtctgtttagtgggctttgatctgatag
More
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| CDS seq | atggggtcggtggaggtggcggcgacctggtacggcggcgggagggagtcaatgcgagggggttcaggcgaggctggcggcgtggctcgcaccgtggcggctcctctcctccggcggcaaggtgctcggcgaggaggaaaaggctgccgagaacatctacatcaagaaatgtgcgatgtgcaggtggagataacatacagagggagacagctcctcccaatcctgacattgcagcatgtccgtgacatcagtaactgcatgaatattttttattcatctattaactgcttgaacagtagaagaaactag |
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| Protein seq | MGSVEVAATWYGGGRESMRGGSGEAGGVARTVAAPLLRRQGARRGGKGCREHLHQEMCDVQVEITYRGRQLLPILTLQHVRDISNCMNIFYSSINCLNSRRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0010300 | OsPr106_07g0010300.02 | Chr07 | 10841163 | 10843690 | + | NAM | ||
| CDS seq | atggggtcggtggaggtggcggcgacctggtacggcggcgggagggagtcaatgcgagggggttcaggcgaggctggcggcgtggctcgcaccgtggcggctcctctcctccggcggcaaggtgctcggcgaggaggaaaaggctgccgagaacatctacatcaagaaatgtgcgatgtgcaggtggagataacatacagagggagacagctcctcccaatcctgacattgcagcatgtccgtgacatcagtaactgcatgaatattttttattcatctattaactgcttgaacagtagaagaaactag
More
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| Protein seq | MGSVEVAATWYGGGRESMRGGSGEAGGVARTVAAPLLRRQGARRGGKGCREHLHQEMCDVQVEITYRGRQLLPILTLQHVRDISNCMNIFYSSINCLNSRRN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0010300 | OsPr106_07g0010300.01 | Chr07 | 10840965 | 10843690 | + | NAM | ||
| CDS seq | atggggtcggtggaggtggcggcgacctggtacggcggcgggagggagtcaatgcgagggggttcaggcgaggctggcggcgtggctcgcaccgtggcggctcctctcctccggcggcaaggtgctcggcgaggaggaaaaggctgccgagaacatctacatcaaggtggagataacatacagagggagacagctcctcccaatcctgacattgcagcattgctgctaagctcacttggaagatcttggtcatgcgacatctgg
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| Protein seq | MGSVEVAATWYGGGRESMRGGSGEAGGVARTVAAPLLRRQGARRGGKGCREHLHQGGDNIQRETAPPNPDIAALLLSSLGRSWSCDIW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0010300 | OsPr106_07g0010300.03 | Chr07 | 10842601 | 10843651 | + | IsoSeq | ||
| CDS seq | tggtcacttttggtggagataacatacagagggagacagctcctcccaatcctgacattgcagcattgc |
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| Protein seq | WSLLVEITYRGRQLLPILTLQHC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 10841757 | 10843289 | + | OsPr106_07g0010300.02 | OsPr106_07g0010300.01,OsPr106_07g0010300.02 | All |
| AF | Chr07 | 10840965 | 10843289 | + | OsPr106_07g0010300.01 | OsPr106_07g0010300.01,OsPr106_07g0010300.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.349657 | 32.996449 | 22.697109 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0010140 | RBH | 2.322897 | 3.024764 | 5.652082 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0185500 | RBH | 7.9152015 | 6.4921375 | 11.705655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010750 | RBH | 0.543272 | 0.502695 | 2.431232 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010220 | RBH | 0.590719 | 0.549922 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010280 | RBH | 0.643321 | 13.769032 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010230 | RBH | 0.000000 | 2.351095 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008970 | RBH | 0.000000 | 2.390190 | 0.953582 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010070 | RBH | 7.741456 | 58.051594 | 20.833879 |
