Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_07g0008010 | OGI:07006270 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr07:7295289-7298873 | ||||||||
| Gene Symbol | GATA23, OsGATA23, OsGATA23a, OsGATA23b | ||||||||||
| DNA seq | atgatgtcagattctacaaggattgtgagtcacatggcatatttttggaaaaatatctacacaaaattactcagcatgcaaaaaaaaaaaaacatgtttagattgtaatgcacaaattcttgcaggggcaacaatgtaccttcacagggttgatgcacgaaataatgcaaactccaaaaagtgcaataaatgctgatcaagattatttgggcatgttaagagatatcttacatactccagctggatttgaggtgaaaaatgacatactctttttggttaaaaaattttacataaggtaacatggtatttagatttgttataattccttgttattttatcattgtagaactcaatgataatgacgagcaataggtttcctgagaactatgagcaaatgggaggtgaaacagaacaaggaacacaggtgaccaattcgcaacagtacttgtcaaacaaaaaaaatatttatgtaaaattatgaattttaatctgttttgttatcaaggcaatttgtgatcaatgggcaagcaagaatatagaagaactatacaacatcaacatgaacaatcagcagggattatcttctgttatcaagacacttgccagtcgatggagcagaaaagatatagatgaactatacaacatcaacaacatgcatcaggtaataagaaaatcatacagattataccatatgatcgaaataagtatataggtgtggaaaatattaagtatttgttacttacataatgcatgttgtaaatggcagcacatcggaagttgaaaacaatgtcagcgcatcggaattggaaaacaatggcaccacatcgaacaaccaggacgatgaagacagtgagaaccaaaacacctgggcatttgaatcaaacaatgaaaccgctgaggtaagaaatttcttaatttaattaacttagaatataaaaaagtacattacacaatttgctgatataaaaaagaatacttaaaagcacatggcacaatgcagggacaacaagctcacactgagaactcgacaattgatctggtgaacaaggttagagcagatgaagaagaacacagagaacaggttgtggccacagaaccccagctgcaggaaaatagcaatccagagactgaaagtaatcagttgataagtgagcaagatatagacaattttttggaagaagatgaagagagcaccccaacaatagatagcaagcacgtgccacatattggaatgcagttcaacgattacaatgaggctcatgggttttttaacttttatgcttatctggttgggttctcagttgctattacacacacgtatagaactataagcaagaagagaaacaacgagattaccaggtacacatacaaatgcaatttacatggcaagaatgaggataacaacaaagacttagaggagcagtttcagactgagaggcaaactaatgttctgataaggactgactgcaagtgtgtaatggttgttaaagagacagtagaaaatggaccgtggaagatttcgaggttagacctgactcacaatcaccctctacgcccgaatgaacaaaaaaagttcctccgttcacacaagcatatgacagaggaagaaaagaggctgattaggacgctaaaggaatgcaacataccaacgaggagtatgattgtgatcctatcatttctccgtggagggttgccatcattgccctacacgaagaaggatgttagcaatgttggtgcatcgattaactctgaaacaagaagcaaggatatgagtcaagtgttgcagtatctgaagaaaaaagaagcacaagacccaggtttctattacaagctcatgctagatgagaacaacaaagtcagaaatatattctggacagatggcagatcgacagagttgtatggtcaatatggtgattgtgtcagctttgatacaacttataagacaaacaaatatgacttgccgtttgctccatttgttgggatgacagaccatggaaacacgtctttttgggtgtgcattcctaggagatgagataactgagacatttaagtgggtttttgagacattcaggacagctatgagaggcaaagatcctattagcataataacagaccaagacagtgcaatgagatctgcaatagggcaagtgttcaagaaaaccaagcataggaactgcctatttcatatcaagaaaaattgcagcgagagaacaggtaacacattcactgacagtacaaagaaagatctatacaatgaatttgaagacattgttaacaattgtttgacagagcatgagtttgaaaccttgtggacacaaatgattgataaatatgagctgcacaatgtgaaatacttgcaatcaatttgggatacaagacaaagctgcatccctgtctattgcaagaatgactttttcccatttatccaaagcacaacgctaagtgaagggactaatgcaaggtttaaacgaggagttgggccaaggcatagtgttacaagcttcctaaaggaatatgacagaataaatgacactatatttgatacactgtattggaatgcctataactcaaacacaaaacaacccaaaaatctatggtcaggatactacatagaagagcaacttcagagatgtacaatttaagcattttcaaaaagttccagcttgaattaaagaaatcaacaaggcttcaggtgacagtgcttgaacatggcaaagcatacttggtattcttggctctaaatcaaaaaaaagaaggaatggagagcaaggaattatgtagttctcacagacttacaaaatgatgagtacacctgtgtgtgtgcaaagttctcgaaggatggaatcctttgctcccatatcctgaaagtaatgttggacctaaatgttagcaaaattccggacaaatacatcatagaaaggtggaggaagaaagacaacaacataacaggtctattcagaggagaatcaagtaatggacctaatgctatgctaatgtataacgtgctctcgcaaaaaatgtcagaattagcatcaaagggttgtaagagaccagagatatatagttacctggttggagaagtggagaagttggatagcatagtggacagcatgattctagaagcccatggaaatcacacatcccaggtccaaagtaatgcaacaaacaacgctgttgttgaggggcaacaacatgggaatctgaatgatgaagaggaaatagaagacccagagcaagctaatacaaaaggcaggaaatcaataaggcagaaaagattggtggaaaagattaaggataaagaatgcaaaaaatacaaaggcaagagtaaggggaagaataaaacattgatcttaacttttccacaaaattgtcgatttctagcaatacaactgataaaataaatataaatctgttgcaggtggccaaagtaatgagaatcagttgaagacaaagagaacaagtaatgttgcgcaaggtgggactgcttgtgagatgcaaccaaaaccaaagaggcggaagaaaggacaggaaaacaacaccaaagaaataataggtaaaaatagggcaaaaaaactatgtaactag
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| CDS seq | atgatgtcagattctacaaggattgggcaacaatgtaccttcacagggttgatgcacgaaataatgcaaactccaaaaagtgcaataaatgctgatcaagattatttgggcatgttaagagatatcttacatactccagctggatttgagaactcaatgataatgacgagcaataggtttcctgagaactatgagcaaatgggaggtgaaacagaacaaggaacacaggcaatttgtgatcaatgggcaagcaagaatatagaagaactatacaacatcaacatgaacaatcagcagggattatcttctgttatcaagacacttgccagtcgatggagcagaaaagatatagatgaactatacaacatcaacaacatgcatcaggacgatgaagacagtgagaaccaaaacacctgggcatttgaatcaaacaatgaaaccgctgagggacaacaagctcacactgagaactcgacaattgatctggtgaacaaggttagagcagatgaagaagaacacagagaacaggttgtggccacagaaccccagctgcaggaaaatagcaatccagagactgaaagtaatcagttgataagtgagcaagatatagacaattttttggaagaagatgaagagagcaccccaacaatagatagcaagcacgtgccacatattggaatgcagttcaacgattacaatgaggctcatgggttttttaacttttatgcttatctggttgggttctcagttgctattacacacacgtatagaactataagcaagaagagaaacaacgagattaccaggtacacatacaaatgcaatttacatggcaagaatgaggataacaacaaagacttagaggagcagtttcagactgagaggcaaactaatgttctgataaggactgactgcaagtgtgtaatggttgttaaagagacagtagaaaatggaccgtggaagatttcgaggttagacctgactcacaatcaccctctacgcccgaatgaacaaaaaaagttcctccgttcacacaagcatatgacagaggaagaaaagaggctgattaggacgctaaaggaatgcaacataccaacgaggaaattagcatcaaagggttgtaagagaccagagatatatagttacctggttggagaagtggagaagttggatagcatagtggacagcatgattctagaagcccatggaaatcacacatcccaggtccaaagtaatgcaacaaacaacgctgttgttgaggggcaacaacatgggaatctgaatgatgaagaggaaatagaagacccagagcaagctaatacaaaaggcaggaaatcaataaggcagaaaagattggtggaaaagattaaggataaagaatgcaaaaaatacaaaggcaagagtggccaaagtaatgagaatcagttgaagacaaagagaacaagtaatgttgcgcaaggtgggactgcttgtgagatgcaaccaaaaccaaagaggcggaagaaaggacaggaaaacaacaccaaagaaataataggtaaaaatagggcaaaaaaactatgtaactag
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| Protein seq | MMSDSTRIGQQCTFTGLMHEIMQTPKSAINADQDYLGMLRDILHTPAGFENSMIMTSNRFPENYEQMGGETEQGTQAICDQWASKNIEELYNINMNNQQGLSSVIKTLASRWSRKDIDELYNINNMHQDDEDSENQNTWAFESNNETAEGQQAHTENSTIDLVNKVRADEEEHREQVVATEPQLQENSNPETESNQLISEQDIDNFLEEDEESTPTIDSKHVPHIGMQFNDYNEAHGFFNFYAYLVGFSVAITHTYRTISKKRNNEITRYTYKCNLHGKNEDNNKDLEEQFQTERQTNVLIRTDCKCVMVVKETVENGPWKISRLDLTHNHPLRPNEQKKFLRSHKHMTEEEKRLIRTLKECNIPTRKLASKGCKRPEIYSYLVGEVEKLDSIVDSMILEAHGNHTSQVQSNATNNAVVEGQQHGNLNDEEEIEDPEQANTKGRKSIRQKRLVEKIKDKECKKYKGKSGQSNENQLKTKRTSNVAQGGTACEMQPKPKRRKKGQENNTKEIIGKNRAKKLCN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0008010 | OsPr106_07g0008010.01 | Chr07 | 7295289 | 7298873 | + | NAM | ||
| CDS seq | atgatgtcagattctacaaggattgggcaacaatgtaccttcacagggttgatgcacgaaataatgcaaactccaaaaagtgcaataaatgctgatcaagattatttgggcatgttaagagatatcttacatactccagctggatttgagaactcaatgataatgacgagcaataggtttcctgagaactatgagcaaatgggaggtgaaacagaacaaggaacacaggcaatttgtgatcaatgggcaagcaagaatatagaagaactatacaacatcaacatgaacaatcagcagggattatcttctgttatcaagacacttgccagtcgatggagcagaaaagatatagatgaactatacaacatcaacaacatgcatcaggacgatgaagacagtgagaaccaaaacacctgggcatttgaatcaaacaatgaaaccgctgagggacaacaagctcacactgagaactcgacaattgatctggtgaacaaggttagagcagatgaagaagaacacagagaacaggttgtggccacagaaccccagctgcaggaaaatagcaatccagagactgaaagtaatcagttgataagtgagcaagatatagacaattttttggaagaagatgaagagagcaccccaacaatagatagcaagcacgtgccacatattggaatgcagttcaacgattacaatgaggctcatgggttttttaacttttatgcttatctggttgggttctcagttgctattacacacacgtatagaactataagcaagaagagaaacaacgagattaccaggtacacatacaaatgcaatttacatggcaagaatgaggataacaacaaagacttagaggagcagtttcagactgagaggcaaactaatgttctgataaggactgactgcaagtgtgtaatggttgttaaagagacagtagaaaatggaccgtggaagatttcgaggttagacctgactcacaatcaccctctacgcccgaatgaacaaaaaaagttcctccgttcacacaagcatatgacagaggaagaaaagaggctgattaggacgctaaaggaatgcaacataccaacgaggaaattagcatcaaagggttgtaagagaccagagatatatagttacctggttggagaagtggagaagttggatagcatagtggacagcatgattctagaagcccatggaaatcacacatcccaggtccaaagtaatgcaacaaacaacgctgttgttgaggggcaacaacatgggaatctgaatgatgaagaggaaatagaagacccagagcaagctaatacaaaaggcaggaaatcaataaggcagaaaagattggtggaaaagattaaggataaagaatgcaaaaaatacaaaggcaagagtggccaaagtaatgagaatcagttgaagacaaagagaacaagtaatgttgcgcaaggtgggactgcttgtgagatgcaaccaaaaccaaagaggcggaagaaaggacaggaaaacaacaccaaagaaataataggtaaaaatagggcaaaaaaactatgtaactag
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| Protein seq | MMSDSTRIGQQCTFTGLMHEIMQTPKSAINADQDYLGMLRDILHTPAGFENSMIMTSNRFPENYEQMGGETEQGTQAICDQWASKNIEELYNINMNNQQGLSSVIKTLASRWSRKDIDELYNINNMHQDDEDSENQNTWAFESNNETAEGQQAHTENSTIDLVNKVRADEEEHREQVVATEPQLQENSNPETESNQLISEQDIDNFLEEDEESTPTIDSKHVPHIGMQFNDYNEAHGFFNFYAYLVGFSVAITHTYRTISKKRNNEITRYTYKCNLHGKNEDNNKDLEEQFQTERQTNVLIRTDCKCVMVVKETVENGPWKISRLDLTHNHPLRPNEQKKFLRSHKHMTEEEKRLIRTLKECNIPTRKLASKGCKRPEIYSYLVGEVEKLDSIVDSMILEAHGNHTSQVQSNATNNAVVEGQQHGNLNDEEEIEDPEQANTKGRKSIRQKRLVEKIKDKECKKYKGKSGQSNENQLKTKRTSNVAQGGTACEMQPKPKRRKKGQENNTKEIIGKNRAKKLCN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.583018 | 3.255515 | 1.001057 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0615900 | SBH | 1.649248 | 1.127824 | 3.235230 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g18840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0615900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017740 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008230 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008050 | RBH | 0.163876 | 2.266307 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022030 | SBH | 0.0 | 0.250771 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0125100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008500 | RBH | 0.130558 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0007990 | RBH | 0.158576 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0007990 | RBH | 0.148217 | 6.241865 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0007990 | RBH | 5.134198 | 2.299640 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017760 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021910 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000230 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000230 | RBH | 0.0 | 0.0 | 0.0 |
