Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsPr106_05g0022410		OGI:05066620 \| 7/16			PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)			Chr05:25496929-25502923		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		POX1, Pox1(Px, Pe), PRX74, Px, Pe, Pox1, prx74, prx75
DNA seq		atggcgtcgtcgagggtgatcctagcgctgctgctcgcggcggcggcggtgatggcgtcgtcggcgcagctggacgagaagttctacagcaattcgtgccccagcgtggaggccgtcgtccggaaggagatggtgcgcgcgctcggcgccgcgcccagcctcgccggcccgctcctcaggatgcacttccacgactgcttcgtcagggtaagctgtgcatgcagtgtccattctccattgcgtcgcggctgctggtgtatagtagtagtgttcgatcaggtcgcctgacaacctcgtcgccggccggcgtcgactgtctgtgcatgcagggttgcgacggctcggtgctgctcgactcggccgggaacagcacggcggagaaggacgcgacgccgaaccagacgctgcgcgggttcggcttcgtcgagagggtgaaggccgccgtggagaaggcatgcccgggcaccgtctcctgcgccgacgtgctcgcgctcatggccagggacgccgtgtggctggtgagtagagtatagtacactgcaatgcacgcatgacacgtatactctgacacagtttgcagaagcaaaaagttctcacctcgacttgtcgtcgtcgttgtcttctcttccagagcaagggcccgttctgggcggtgcctctcggccgccgcgacggcagggtgtccatcgccaacgagaccgaccagctgccgcctcccaccgccaacttcaccgagctcacccagatgttcgccgccaagaacctcgacctcaaggacctcgtcgtcctctccggtaaccatcaccattgccaccacacaaactctcttcacacacgtacacacatccatccatggtgtctgacacgatccattgtcgatgttgatcagctgggcacacgatcgggacgtcgcactgcttctccttcactgacaggctgtacaacttcaccggcctggacaacgcccacgacatcgacccgacgctggagctgcagtacatggcgaggctgaggagcaagtgcacgagcctccaagacaacacgacgctggtggagatggacccggggagcttcaagacgttcgacctggggtacttcaagaacgtggccaagcggcgggggctcttccactccgacggcgagctgctcaccaacggcttcacccgcgcctacgtgcagcgccacgccggcggcggctacaaggacgagttcttcgccgacttcgccgcctccatggtcaagatgggcggcgtcgaagtgctcaccggcagccagggcgagatcaggaagaagtgcaacgtggttaactaatcatctctcttaattatcgtcatatatcatcagctgctcgccgagactgtgattatggatttcagcttttgattccggccgtgaccatcttataattaatttccatgtagatcattatcgtaagatttacctgtcccttctttttttttcttgatttcaatcacttcattaattaattgttttgtttatatagcgagccatgcatgtatgtaacaaagttttctccaagtacgtgctcatcatgatcatatgaataaacttcattttttttcaccttgcattattatacatttattattttttatcactcattggtgcctctatctctttgtcagacagttactcagttatgatgccactgtcgtcattttaacatgaaaactagtaaaccaaaatgagtcattactaaagctgtaacacacagcaacgcatcacatgggttgcacatctgatcattcgcaactgacaactataattggaggaacaatctggtcaagaatggactcatctatcatgcgtgccatgacaagtgttccagggcaatttgataattgatatgctgttcagtactgtcagcagagtcccacaaacctctctggcgccctgcattttgttaaccccattgtgcctgcagctctctggcctgaatgtctgtccaaactgaacgacagaaacatttcttaagtagctttggtcacatggcatgcacttacgaaaatgcaattgattattgctgatcatgatggcatctatgacaccaaatcaaattaaggccggtacgaacattggctattattatacgcgaccggcctgtatagtatgagatgggtactgatcagtcctgacaccctgagtgctatctgcgatctatatttccgtattgtaacttcatcaagcagttaataattcggcaaatttagcatctcccacgtttaactgagcactggcacacgaacctacacatatgccatttacgcgggccgacctattcaaaggaggtatcaaaatttataattataaaaaaaattatatctctcgatatctctctgggacagtaaatttttttcgaaatgatttatatacgcatgttcaagggtccttacttttatgctcggctgctcagggaccttgaaattggaagaattaatcttaacaacagattagaacgacaaaaccgttgatggaagagctgctaacgtgttgtaaaccaatacgcttattagtggatcattggatctgttccttgtttttcgcacaacagtagaggcgtaagaagatgtagaacacatatgtccttttacttgtcctcgagaatattgcagaaatagacaattgacatagagatatagaatagaactctctcttattagatttgttctcaagactatctaaaaaattgctggaaaaaactttcaaatctaactatagtataattataatataatttccactataactatagtatgacatgtatataagtattaaaataatatatgcaactttatatctaacttatatagagattacaatatagttacactatagttataatattacactacaactatactatagttacatttaaaagtttttttgcccaaaaaacttgggacggttttttagcaattccgtttgttctcgtgtacaatcaaccatcaatgtctcatcctactctctacatataatatacaagggtcttaataggagataaatattactatctttactcggctttaaattggtccagaagaaacgaactttatctccacaggagatattattttccaactttgaacacacacctttcaacataaaatccccacttgagctaactagcttgtccatctaggcccaatatggttgggcctgggtgacccaattcggcctgtctctcccaactaaaagaaacgtacggcctcatctgatacaacccaactcctcaaaggccccaacgctttccctcgcgaaaacgccgcgccaccgaacaccagcagcaagacgcgtccgcgaacgcgcgccctgggccgaacggttgccgcactacagaatttttttcggttttagatcttttggccgtactttttttcatctgggtcccttgccgtcctctattagggcggcaagggatccagatgaaaaagtacggccgcaagctctttatgggcggccaaaattgtaattagccccttgccgccctctgtatgggcggtaagggcctaatcgcaattttggccgacggcggcagacggcgcggtcgacccaccgtctgccacgtcagcttgccgcccaccattagggcggcaggggctatttctacaatttttttggtcgatagattattcctgtaaatattaaaaaaaatctaaaaacgaaaaaaattcttcccgcactacactgcactccggcgcgcgcaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaagcctcccaactccatgagcaagttgcagcagccgcaggccacaggctcgagcttactagctaggcggagtagagtccgtcgcactcaacgctctgtttcacacacgcacgcacccatctgaaagcacggcgcgaccaaacgcatcgacctttggtttgcccgcgtctcgtcgccatctttgtactacgccaatggctctccgctgcctagctgctgccgcagtacagcttgatcgttgcccgtaacctcccgtggctccgatcccgtctccggcgcggcgcgcggctcggcgttgagacagtttgccgcctcatgtcccgggagctggagctgctgctgtttttgctggccctacgggcgagcggcgaggtcgtcgcgggttcggcggaggcagcggcagcggcagcggcgtggcccgcgctgcaggtggggttctaccatgccaagtgccctgtcgcggaggacgtcgtgctgggcgagatgaggatgatcctcgaggaggatcccacgctcgcgccgtctctgctccggatgcactaccacgactgcttcgtccaggtaattaacaatttttaattgccccaagctacttcatgctcgtccatggcgatcatcgtggttgggttggttgcaggggtgtgacggatcgatcatgctgaggtcgaggagcgggaagggggagagggacgcgacgcccaaccggagcatgcggggctacgacgccatcaatcggatcaaggcgaggctggagaccgtctgcccgctcaccgtctcctgcgccgacatcatcgccatggcggcgagagacgccgtctacctggtacgcgcctcacggaacaaatccatggcttctttgcaaatcgatatcgcgctctgcttctgaatgctccttgattcgcacagagcaaggggccgtggtacgacgtggagaccgggaggagggacggcgacgtgagcgtggccgagtacgccgagaacgacctggcgccgccggactccaacatcgtcgacgtcaagaccttcttcagcgtcaagtctctcaacgccaaggacatcgccgtgctcttcggtacgtatactaccacgccgtctccttttccccttttgcttctcgcgttggacgacggcgacagcttatcagaacgccggtaatggccattggccgccgccggcggcggcggcggcgtcgtgcaggatgccacagcatcgggacgtcgcactgcggggcgttccagaagcggctgtacaacttcaccggaaggatggaccaggacccgtcgctggacgccggctacgcggcgaagctcaagaagctctgcccgccggggcacggccacgaccacgaccacgacggccatggcggcgccggcggcgcggccaaggtgcccatggaccccggcagcggcttcacattcgacctgagctactaccggcacgtgctcgccacgggcggcctgttccagtcggacggcagcctccgcgacgaccccgtcacgaggggctacgtcgagaagctcgccaacgcgtcgtcgtcggaggagtacttcgccgacttcgcggcggcgatggtcaagatgggccgcaccgacgtgctcaccggcgatctcggggcggtcaggccgacgtgtgacagcctcgtcgactagtttattcggcgtcccgccacatttgtgatctgtagaattttatatggttttctctgtaacatatatgtaatttcgatttagattagggaaaggttgagacttgagagaagttgcagtttctacgcttttgaggagactgattggaacagcgtatgaatctagagttaaacacttgtcagttgtcaaactactacaaactaatgaatctgtacagatgggcttgatgacgaaccttgcagggtgtaggttggttattcagctgttcttcgtagtagcattgttagtttggtgaatccaccgtttggtcaaccataagttggtcaccaaatctgaccagattgtatagattacttaggaacaaagactgcatcaaccttatgcaagctaacctatgtgaaaaaataagcacggaatgcttttgctagttagaagtctctttcatgagcagctctgttgctcactgcttcaagcttaagtacaatgccaggatgcagaatatagaagtagcgcccttctgtaagggaaggagaaaaaacatagcattggaagcagacaaatttcaaaattcagtatatttgtcctttc More
CDS seq		atggcgtcgtcgagggtgatcctagcgctgctgctcgcggcggcggcggtgatggcgtcgtcggcgcagctggacgagaagttctacagcaattcgtgccccagcgtggaggccgtcgtccggaaggagatggtgcgcgcgctcggcgccgcgcccagcctcgccggcccgctcctcaggatgcacttccacgactgcttcgtcaggagcaagggcccgttctgggcggtgcctctcggccgccgcgacggcagggtgtccatcgccaacgagaccgaccagctgccgcctcccaccgccaacttcaccgagctcacccagatgttcgccgccaagaacctcgacctcaaggacctcgtcgtcctctccgctgggcacacgatcgggacgtcgcactgcttctccttcactgacaggctgtacaacttcaccggcctggacaacgcccacgacatcgacccgacgctggagctgcagtacatggcgaggctgaggagcaagtgcacgagcctccaagacaacacgacgctggtggagatggacccggggagcttcaagacgttcgacctggggtacttcaagaacgtggccaagcggcgggggctcttccactccgacggcgagctgctcaccaacggcttcacccgcgcctacctggagctgctgctgtttttgctggccctacgggcgagcggcgaggtcgtcgcgggttcggcggaggcagcggcagcggcagcggcgtggcccgcgctgcaggtggggttctaccatgccaagtgccctgtcgcggaggacgtcgtgctgggcgagatgaggatgatcctcgaggaggatcccacgctcgcgccgtctctgctccggatgcactaccacgactgcttcgtccagagcaaggggccgtggtacgacgtggagaccgggaggagggacggcgacgtgagcgtggccgagtacgccgagaacgacctggcgccgccggactccaacatcgtcgacgtcaagaccttcttcagcgtcaagtctctcaacgccaaggacatcgccgtgctcttcggatgccacagcatcgggacgtcgcactgcggggcgttccagaagcggctgtacaacttcaccggaaggatggaccaggacccgtcgctggacgccggctacgcggcgaagctcaagaagctctgcccgccggggcacggccacgaccacgaccacgacggccatggcggcgccggcggcgcggccaaggtgcccatggaccccggcagcggcttcacattcgacctgagctactaccggcacgtgctcgccacgggcggcctgttccagtcggacggcagcctccgcgacgaccccgtcacgaggggctacgtcgagaagctcgccaacgcgtcgtcgtcggaggagtacttcgccgacttcgcggcggcgatggtcaagatgggccgcaccgacgtgctcaccggcgatctcggggcggtcaggccgacgtgtgacagcctcgtcgactag More
Protein seq		MASSRVILALLLAAAAVMASSAQLDEKFYSNSCPSVEAVVRKEMVRALGAAPSLAGPLLRMHFHDCFVRSKGPFWAVPLGRRDGRVSIANETDQLPPPTANFTELTQMFAAKNLDLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYFKNVAKRRGLFHSDGELLTNGFTRAYLELLLFLLALRASGEVVAGSAEAAAAAAAWPALQVGFYHAKCPVAEDVVLGEMRMILEEDPTLAPSLLRMHYHDCFVQSKGPWYDVETGRRDGDVSVAEYAENDLAPPDSNIVDVKTFFSVKSLNAKDIAVLFGCHSIGTSHCGAFQKRLYNFTGRMDQDPSLDAGYAAKLKKLCPPGHGHDHDHDGHGGAGGAAKVPMDPGSGFTFDLSYYRHVLATGGLFQSDGSLRDDPVTRGYVEKLANASSSEEYFADFAAAMVKMGRTDVLTGDLGAVRPTCDSLVD
Function		Peroxidase 1 [UniProtKB/Swiss-Prot:P37834]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsPr106_05g0022410	OsPr106_05g0022410.01	Chr05	25496929	25502923	+	NAM
CDS seq	atggcgtcgtcgagggtgatcctagcgctgctgctcgcggcggcggcggtgatggcgtcgtcggcgcagctggacgagaagttctacagcaattcgtgccccagcgtggaggccgtcgtccggaaggagatggtgcgcgcgctcggcgccgcgcccagcctcgccggcccgctcctcaggatgcacttccacgactgcttcgtcaggagcaagggcccgttctgggcggtgcctctcggccgccgcgacggcagggtgtccatcgccaacgagaccgaccagctgccgcctcccaccgccaacttcaccgagctcacccagatgttcgccgccaagaacctcgacctcaaggacctcgtcgtcctctccgctgggcacacgatcgggacgtcgcactgcttctccttcactgacaggctgtacaacttcaccggcctggacaacgcccacgacatcgacccgacgctggagctgcagtacatggcgaggctgaggagcaagtgcacgagcctccaagacaacacgacgctggtggagatggacccggggagcttcaagacgttcgacctggggtacttcaagaacgtggccaagcggcgggggctcttccactccgacggcgagctgctcaccaacggcttcacccgcgcctacctggagctgctgctgtttttgctggccctacgggcgagcggcgaggtcgtcgcgggttcggcggaggcagcggcagcggcagcggcgtggcccgcgctgcaggtggggttctaccatgccaagtgccctgtcgcggaggacgtcgtgctgggcgagatgaggatgatcctcgaggaggatcccacgctcgcgccgtctctgctccggatgcactaccacgactgcttcgtccagagcaaggggccgtggtacgacgtggagaccgggaggagggacggcgacgtgagcgtggccgagtacgccgagaacgacctggcgccgccggactccaacatcgtcgacgtcaagaccttcttcagcgtcaagtctctcaacgccaaggacatcgccgtgctcttcggatgccacagcatcgggacgtcgcactgcggggcgttccagaagcggctgtacaacttcaccggaaggatggaccaggacccgtcgctggacgccggctacgcggcgaagctcaagaagctctgcccgccggggcacggccacgaccacgaccacgacggccatggcggcgccggcggcgcggccaaggtgcccatggaccccggcagcggcttcacattcgacctgagctactaccggcacgtgctcgccacgggcggcctgttccagtcggacggcagcctccgcgacgaccccgtcacgaggggctacgtcgagaagctcgccaacgcgtcgtcgtcggaggagtacttcgccgacttcgcggcggcgatggtcaagatgggccgcaccgacgtgctcaccggcgatctcggggcggtcaggccgacgtgtgacagcctcgtcgactag More
Protein seq	MASSRVILALLLAAAAVMASSAQLDEKFYSNSCPSVEAVVRKEMVRALGAAPSLAGPLLRMHFHDCFVRSKGPFWAVPLGRRDGRVSIANETDQLPPPTANFTELTQMFAAKNLDLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYFKNVAKRRGLFHSDGELLTNGFTRAYLELLLFLLALRASGEVVAGSAEAAAAAAAWPALQVGFYHAKCPVAEDVVLGEMRMILEEDPTLAPSLLRMHYHDCFVQSKGPWYDVETGRRDGDVSVAEYAENDLAPPDSNIVDVKTFFSVKSLNAKDIAVLFGCHSIGTSHCGAFQKRLYNFTGRMDQDPSLDAGYAAKLKKLCPPGHGHDHDHDGHGGAGGAAKVPMDPGSGFTFDLSYYRHVLATGGLFQSDGSLRDDPVTRGYVEKLANASSSEEYFADFAAAMVKMGRTDVLTGDLGAVRPTCDSLVD More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsPr106_05g0022410	OsPr106_05g0022410.02	Chr05	25500738	25502567	+	IsoSeq
CDS seq	atgccacagcatcgggacgtcgcactgcggggcgttccagaagcggctgtacaacttcaccggaaggatggaccaggacccgtcgctggacgccggctacgcggcgaagctcaagaagctctgcccgccggggcacggccacgaccacgaccacgacggccatggcggcgccggcggcgcggccaaggtgcccatggaccccggcagcggcttcacattcgacctgagctactaccggcacgtgctcgccacgggcggcctgttccagtcggacggcagcctccgcgacgaccccgtcacgaggggctacgtcgagaagctcgccaacgcgtcgtcgtcggaggagtacttcgccgacttcgcggcggcgatggtcaagatgggccgcaccgacgtgctcaccggcgatctcggggcggtcaggccgac More
Protein seq	MPQHRDVALRGVPEAAVQLHRKDGPGPVAGRRLRGEAQEALPAGARPRPRPRRPWRRRRRGQGAHGPRQRLHIRPELLPARARHGRPVPVGRQPPRRPRHEGLRREARQRVVVGGVLRRLRGGDGQDGPHRRAHRRSRGGQAD

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
SE	Chr05	25501250	25501596	+	OsPr106_05g0022410.02	OsPr106_05g0022410.01,OsPr106_05g0022410.02	All

Expression

	Leaf	Root	Panicle
FPKM	0.000000	77.621986	10.860765

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0499400	RBH	0.0	0.335624	0.599916
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g42000	RBH	0.000000	0.159544	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0499400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0022470	RBH	0.000000	8.486718	11.501786
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0022410	RBH	0.000000	85.353043	1.643149
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0022350	RBH	0.000000	43.214684	8.309300
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0022320	RBH	0.000000	2.166593	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0035240	RBH	0.0	13.456853	2.733048
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0381100	RBH	7.1923445	9.7885715	0.4146265
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0022010	RBH	0.000000	5.265853	0.472647
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0390900	RBH	8.04579	0.5364065	0.4977175
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0022250	RBH	0.000000	1.345136	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0022160	RBH	0.0	111.337799	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0022290	RBH	0.000000	278.228973	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0022350	RBH	0.165583	17.747301	3.563949
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0022330	RBH	0.000000	51.874123	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G021780	RBH	0.000000	25.498852	2.207070
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0022190	RBH	0.0	229.363922	10.566010

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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