Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0022250 | OGI:05066610 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:25711148-25716893 | ||||||||
| Gene Symbol | POX1, Pox1(Px, Pe), PRX74, Px, Pe, Pox1, prx74, prx75 | ||||||||||
| DNA seq | agcagcagcagctacCAGcaacaagcattctcttctagccttagcctagctagctagctttgttgtctagctctgatcgaggttggtggtgatcatggcgtcgtcgagggtgatcctagcgctgctgctcgcggcggcggcggtgatggcgtcgtcggcGCAgctggacgagaaattctacagcaattcgtgccccagcgtggaggccgtcgtccggaaggagatggtgcgcgcgctcggcgccgcgcccagcctcgccggcccgctcctcaggatgcacttccacgactgcttcgtcagggtaagctgtgcatgcagtgtccattctccattgcgtcgcggctgctggtgtatagtagtagtgttcgatcaggtcgcctgacaacctcgtcgccggccggcgtcgactgtctgtgcatgcagggttgcgacggctcggtgctgctcgactcggccgggaacagcacggcggagaaggacgcgacgccgaaccagacgctgcgcgggttcggcttcgtcgagagggtgaaggccgccgtggagaaggcatgcccgggcaccgtctcctgcgCcgacgtgctcgcgctcatggccagggacgccgtgtggctggtgagtagagtatagtacactgcaatgcacgcatgacacgtatactctgacacagtttgcagaagcaaaaagttctcacctcgacttgtcgtcgtcgttgtcttctcttccagagcaagggcccgttctgggcggtgcctctcggccgccGcgacggcagggtgtccatcgccaacgagaccgaccaactgccgcctcccaccgccaacttcaccgagctcacccagatgttcgccgccaagaacctcgacctcaaggacctcgtcgtcctctccggtaaccatcaccattgccacCAcacaaactctcttcacacacgtacacacatccatccatggtgtctgacacgatccattgtcgatgttgatcagctgggcacacgatcgggacgtcgcactgcttctccttcactgacaggctgtacaacttcaccggcctggacaacgcccacgacatcgacccgacgctggagctgcagtacatggcgaggctgaggagcaagtgcacgagcctccaagacaacacgacgctggtggagatggacccggggagcttcaagacgttcgacctggggtactacaagaacgtggccaagcggcGGgggGGCTCTTCCACTCCGACGGCGAGCTGCTCACCAACGGCTTCACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCATCAGCTGCTCGCGGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTTTCACCTTGCATTATTATACATTTATTATTTTTTATCACTCATTGGTGCCTCTATCTCTTTGTCAGACAGTTACTCAGTTATGATGCCACTGTCGTCATTTTAACATGAAAACTAGTAAACCAAAATGAGTCATTACTAAAGCTGTAACACACAGCAACGCATCACATGGGTTGCACATCTGATCATTCGCAACTGACAACTATAATTGGAGGAACAATCTGGTCAAGAATGGACTCATCTATCATGCGTGCCATGACAAGTGTTCCAGGGCAATTttgataattgatatgctgttcagtactgtcagcagagtccacaaacctctctggcgccctgcattttgttaaccccattgtgcctgcagctctctggcctgaatgtctgtccaaactgaacgacagaaacatttcttaagtagctttggtcacatggcatgcacttacgaaaatgcaattgattattgctgatcatgatggcatctatgacaccaaatcaaactaaggccggtacgaacattggctattattatacgcgaccggcctgtatagtatgagatgggtactgatcagtcctgataccctgagtgctatctgcgatctatatttccgtattgtaacttcatcaagcagttaataattcggcaaatttagcatctcccacgtttaactgagcactggcacacgaacctacacatatgccatttacgcgggccgacctattcaaaggaggtatcaaaatttataattatAaaaaaaattatatctctcgatatctctctgggacagtaaatttttttcgaaatgatttatatacgcatgttcaagggtccttacttttatgctcggctgctcagggaccttgaaattggaagaattaatcttaacaacagattagaacgacaaaaccgatgatggaagagctgctaacgtgttgtaaaccaatacgcttattagtggatcattggatctgttccttgtttttcgcacaacagtagaggcgtaagAagatgtagaacacatatgtccttttacttgtcctcgagaacattgcagaaatagacaattgacacagagatatagaatagaactctctcttattagatttgttctcaagactatctaaaaaattgctgcaagtttttaaggaaaaaactttcaaatctaactatagtataattataatataatttccactataactatagtataacatgtatataagtattaaaataatatatgcaactttatatctaacttatatagagatcacaatatagttacactatagttataatattacactacaactatactatagttacatttaaaagttttttttgtccaaaaaacttgggacggttttttagcaattccgtttgttctcgtgtacaatcaaccatcaatgtctcatcctactctctacatataATatacaagggtcttaataggagataaatattactatctttactcggctttaaattggtccagaagaaacgaactttatctccacaggagatattattttccaactttgaacacacaccTttcaacataaaatccccacttgagctaactagcttgtccatgtaggcccaatatggttgggcctgggtgacccaattcggcctgtctctcccaactaaaagaaacgtacggcctcatctgatacaacccaactcctcaaaggcaccaacgctttccctcgcgaaaacgccgcgccaccgaacaccagcagcaagacgcgtccgcgaacgcgcgccatgggccgaacggttgccgcactacactgcactccggcgcgcgcaccaaccaaccaaccaaccaaccaaccaaccaagcctcccaactccatgagcaagttgcagcagccgcaggccacatgctcgagcttactagctaggcggagtagagtccgtcacactcaacgctctgtttcacacacgcacgcacccatctgaaagcacggcgcgaccaaacgcatcgacctttggtttgcccgcgtctcgttgccatctttgtactacgccaatggctctccgctgcctagctgctgccgcagtacagcttgatcgttgcccgtaacctcccgtggctccgatcccgtctccggcgcggcgcgcggctcggcgttgagacagtttgccgcctcatgtcccgggagctggagctgctgctgtttttgctggccctacgggcgagcggcgaggtcgtcgcgggttcggcggaggcagcggcagcggcagcggcgtggcccgcgctgcaggtggggttctaccatgccaagtgccctgtcgcggaggacgtcgtgctgggcgagatgaggatgatcctcgaggaggatcccacgctcgcgccgtctctgctccggatgcactaccacgactgcttcgtccaggtaattaacaatttttaattgccccaagctacttcatgctcgtccatggcgatcatcgtggttgggttggttgcaggggtgtgacggatcgatcatgctgaggtcgaggagcgggaaggggGAgagggacgcgacgcccaaccggagcatgcggggctacgacGccatcaatcggatcaaggcgaggctggagaccgtctgcccgctcaccgtctcctgcgccgacatcatcgccatggcggcgagagacgccgtctacctggtacgcgcctcacggaacaaatccatggcttctttgcaaatcgatatcgcgctctgcttctgaatgctccttgattcgcacagagcaaggggccgtggtacgacgtggagaccGggaggaGggacggcgacgtgagcgtggccgagtacgccgagaacgacctggcgccgccggactccaacatcgtcgacgtcaagaccttcttcagcgtcaagtctctcaacgccaaggacatcgccgtgctcttcggtacgtatactaccacgccgtctccttttccccttttgcttctcgcgttggacgacggcgacagcttatcagAacgccggtaatggccattggccgccgccgccggcggcggcggcgtcgtgcaggatgccacagcatcgggacgtcgcactgcggggcgttccagaagcggctgtacaacttcaccggaaggatggaccaggacccgtcgctggacgccggctacgcggcgaagctcaagaagctctgcccgccggggcacggccacgaccacGaccacgacggccatggcggcgccgccggcgcggccaaGGTgcccatggaccccggcagcggcttcacattcgacctgagctactaccggcacgtgctcgccacgggcggcctgttccagtcggacggcagcctccgcgacgaccccgtcacgaggggctacgtcgagaagctcgccaacgcgtcgtcgtcggaggagtacttcgccgacttcgcggcggcgatggtcaagatgggccgcaccgacgtgctcaccggcgatctcggggcggtcaggccgacgtgtgacagcctcgtcgactagtttattcggcgtcccgccacatttgtgatctgtagaattttatatggttttctctgtaacatatatgtaatttcgatttagattagggaaaggttgagacttgagagaagttgcagtttctacgcttttgaggagactgattggaacagcgtatgaatctagagttaaacacttgtcagttgtcAaactactacaaactaatgaatctgtacagatgggcttgatgacgaaccttgcagggtgtaggttggttattcagctgttcttcgtagtagcattgttagtttggtgaatccaccgtttggtcaaccataagttggtcaccaaatctgaccagattgtatagattacttaggaacaaagactgcatcaaccttatgcaagctaacctatgtgaaaaaataagcacggaatgctttgctagttagaagtctctttcatgagcagctctgttgctcactgcttcaagcttaagtacaatgccaggatgcagaatatagaagtagcgcccttctgtaagggaaggagaaaaaacatagcattggaagcagacaaatttcaaaattcagtatatttgtcctttc
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| CDS seq | atggcgtcgtcgagggtgatcctagcgctgctgctcgcggcggcggcggtgatggcgtcgtcggcGCAgctggacgagaaattctacagcaattcgtgccccagcgtggaggccgtcgtccggaaggagatggtgcgcgcgctcggcgccgcgcccagcctcgccggcccgctcctcaggatgcacttccacgactgcttcgtcaggagcaagggcccgttctgggcggtgcctctcggccgccGcgacggcagggtgtccatcgccaacgagaccgaccaactgccgcctcccaccgccaacttcaccgagctcacccagatgttcgccgccaagaacctcgacctcaaggacctcgtcgtcctctccgctgggcacacgatcgggacgtcgcactgcttctccttcactgacaggctgtacaacttcaccggcctggacaacgcccacgacatcgacccgacgctggagctgcagtacatggcgaggctgaggagcaagtgcacgagcctccaagacaacacgacgctggtggagatggacccggggagcttcaagacgttcgacctggggtactacaagaacCTGCTCACCAACGGCTTCACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGctggagctgctgctgtttttgctggccctacgggcgagcggcgaggtcgtcgcgggttcggcggaggcagcggcagcggcagcggcgtggcccgcgctgcaggtggggttctaccatgccaagtgccctgtcgcggaggacgtcgtgctgggcgagatgaggatgatcctcgaggaggatcccacgctcgcgccgtctctgctccggatgcactaccacgactgcttcgtccagagcaaggggccgtggtacgacgtggagaccGggaggaGggacggcgacgtgagcgtggccgagtacgccgagaacgacctggcgccgccggactccaacatcgtcgacgtcaagaccttcttcagcgtcaagtctctcaacgccaaggacatcgccgtgctcttcggatgccacagcatcgggacgtcgcactgcggggcgttccagaagcggctgtacaacttcaccggaaggatggaccaggacccgtcgctggacgccggctacgcggcgaagctcaagaagctctgcccgccggggcacggccacgaccacGaccacgacggccatggcggcgccgccggcgcggccaaGGTgcccatggaccccggcagcggcttcacattcgacctgagctactaccggcacgtgctcgccacgggcggcctgttccagtcggacggcagcctccgcgacgaccccgtcacgaggggctacgtcgagaagctcgccaacgcgtcgtcgtcggaggagtacttcgccgacttcgcggcggcgatggtcaagatgggccgcaccgacgtgctcaccggcgatctcggggcggtcaggccgacgtgtgacagcctcgtcgactag
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| Protein seq | MASSRVILALLLAAAAVMASSAQLDEKFYSNSCPSVEAVVRKEMVRALGAAPSLAGPLLRMHFHDCFVRSKGPFWAVPLGRRDGRVSIANETDQLPPPTANFTELTQMFAAKNLDLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYYKNLLTNGFTRAYVQRHAGGGYKDEFFADFAASMVKMGGVEVLTGSQGEIRKKCNVLELLLFLLALRASGEVVAGSAEAAAAAAAWPALQVGFYHAKCPVAEDVVLGEMRMILEEDPTLAPSLLRMHYHDCFVQSKGPWYDVETGRRDGDVSVAEYAENDLAPPDSNIVDVKTFFSVKSLNAKDIAVLFGCHSIGTSHCGAFQKRLYNFTGRMDQDPSLDAGYAAKLKKLCPPGHGHDHDHDGHGGAAGAAKVPMDPGSGFTFDLSYYRHVLATGGLFQSDGSLRDDPVTRGYVEKLANASSSEEYFADFAAAMVKMGRTDVLTGDLGAVRPTCDSLVD |
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| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:P37834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0022250 | OsLima_05g0022250.01 | Chr05 | 25711242 | 25716893 | + | NAM | ||
| CDS seq | atggcgtcgtcgagggtgatcctagcgctgctgctcgcggcggcggcggtgatggcgtcgtcggcGCAgctggacgagaaattctacagcaattcgtgccccagcgtggaggccgtcgtccggaaggagatggtgcgcgcgctcggcgccgcgcccagcctcgccggcccgctcctcaggatgcacttccacgactgcttcgtcaggagcaagggcccgttctgggcggtgcctctcggccgccGcgacggcagggtgtccatcgccaacgagaccgaccaactgccgcctcccaccgccaacttcaccgagctcacccagatgttcgccgccaagaacctcgacctcaaggacctcgtcgtcctctccgctgggcacacgatcgggacgtcgcactgcttctccttcactgacaggctgtacaacttcaccggcctggacaacgcccacgacatcgacccgacgctggagctgcagtacatggcgaggctgaggagcaagtgcacgagcctccaagacaacacgacgctggtggagatggacccggggagcttcaagacgttcgacctggggtactacaagaacCTGCTCACCAACGGCTTCACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGctggagctgctgctgtttttgctggccctacgggcgagcggcgaggtcgtcgcgggttcggcggaggcagcggcagcggcagcggcgtggcccgcgctgcaggtggggttctaccatgccaagtgccctgtcgcggaggacgtcgtgctgggcgagatgaggatgatcctcgaggaggatcccacgctcgcgccgtctctgctccggatgcactaccacgactgcttcgtccagagcaaggggccgtggtacgacgtggagaccGggaggaGggacggcgacgtgagcgtggccgagtacgccgagaacgacctggcgccgccggactccaacatcgtcgacgtcaagaccttcttcagcgtcaagtctctcaacgccaaggacatcgccgtgctcttcggatgccacagcatcgggacgtcgcactgcggggcgttccagaagcggctgtacaacttcaccggaaggatggaccaggacccgtcgctggacgccggctacgcggcgaagctcaagaagctctgcccgccggggcacggccacgaccacGaccacgacggccatggcggcgccgccggcgcggccaaGGTgcccatggaccccggcagcggcttcacattcgacctgagctactaccggcacgtgctcgccacgggcggcctgttccagtcggacggcagcctccgcgacgaccccgtcacgaggggctacgtcgagaagctcgccaacgcgtcgtcgtcggaggagtacttcgccgacttcgcggcggcgatggtcaagatgggccgcaccgacgtgctcaccggcgatctcggggcggtcaggccgacgtgtgacagcctcgtcgactag
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| Protein seq | MASSRVILALLLAAAAVMASSAQLDEKFYSNSCPSVEAVVRKEMVRALGAAPSLAGPLLRMHFHDCFVRSKGPFWAVPLGRRDGRVSIANETDQLPPPTANFTELTQMFAAKNLDLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYYKNLLTNGFTRAYVQRHAGGGYKDEFFADFAASMVKMGGVEVLTGSQGEIRKKCNVLELLLFLLALRASGEVVAGSAEAAAAAAAWPALQVGFYHAKCPVAEDVVLGEMRMILEEDPTLAPSLLRMHYHDCFVQSKGPWYDVETGRRDGDVSVAEYAENDLAPPDSNIVDVKTFFSVKSLNAKDIAVLFGCHSIGTSHCGAFQKRLYNFTGRMDQDPSLDAGYAAKLKKLCPPGHGHDHDHDGHGGAAGAAKVPMDPGSGFTFDLSYYRHVLATGGLFQSDGSLRDDPVTRGYVEKLANASSSEEYFADFAAAMVKMGRTDVLTGDLGAVRPTCDSLVD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0022250 | OsLima_05g0022250.02 | Chr05 | 25711148 | 25712826 | + | IsoSeq | ||
| CDS seq | atgcccgggcaccgtctcctgcgCcgacgtgctcgcgctcatggccagggacgccgtgtggctgagcaagggcccgttctgggcggtgcctctcggccgccGcgacggcagggtgtccatcgccaacgagaccgaccaactgccgcctcccaccgccaacttcaccgagctcacccagatgttcgccgccaagaacctcgacctcaaggacctcgtcgtcctctccgctgggcacacgatcgggacgtcgcactgcttctcctt
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| Protein seq | MPGHRLLRRRARAHGQGRRVAEQGPVLGGASRPPRRQGVHRQRDRPTAASHRQLHRAHPDVRRQEPRPQGPRRPLRWAHDRDVALLLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 25711448 | 25711873 | + | OsLima_05g0022250.02 | OsLima_05g0022250.02,OsLima_05g0022250.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.345136 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0499300 | RBH | 0.000000 | 0.0 | 0.442997 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41990 | RBH | 0.000000 | 0.0 | 0.112450 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0499300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022470 | RBH | 0.000000 | 8.486718 | 11.501786 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022410 | RBH | 0.000000 | 85.353043 | 1.643149 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022350 | RBH | 0.000000 | 43.214684 | 8.309300 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022320 | RBH | 0.000000 | 2.166593 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022410 | RBH | 0.000000 | 77.621986 | 10.860765 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0381100 | RBH | 7.1923445 | 9.7885715 | 0.4146265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022010 | RBH | 0.000000 | 5.265853 | 0.472647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0390900 | RBH | 8.04579 | 0.5364065 | 0.4977175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035120 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022160 | RBH | 0.0 | 111.337799 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022290 | RBH | 0.000000 | 278.228973 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022350 | RBH | 0.165583 | 17.747301 | 3.563949 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022330 | RBH | 0.000000 | 51.874123 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021780 | RBH | 0.000000 | 25.498852 | 2.207070 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022190 | RBH | 0.0 | 229.363922 | 10.566010 |
