Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0027860 | OGI:04093890 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:33329273-33332484 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cctcgcagatcgcagcaactgagctgcatagattgggtcttaagaaaaaaaagtcttcgtgccaaagcccacacattgcaaccacggtcgcctcgtctcgaacccactcggccccactcgccgtcgccggcgacaaagctcctcccgcgacgggtactccgccgtccgccctgcatgcgtgcagtgcagcggtgcagggtttccccgcatcgcccgacgcggcattgctgccggctgccggaggggagctcctcccctacgtcgacggcgcgtggagacggccgggccggcggcgggcggcggtgcgcagagaggagcggtgggcgcggctctgtgccttgcgcttgcaggggaccaggcttgcatccagggtgggttgcagatgtggccagtatccgggatccggcctggcggctttggatccatggcgatgccgtggcgggcggaggctggccaggcatgtgctttgttcccccaggattaatatctgtggttcagcataaaatccttacttcttgatttgctgcgttctcaattgttggtcagaactaaacatgcgtgattgcagtccacaatacacatttggatttggatgatggaaccatttcaatcatttgagtgcaaactctgcttgcagttcaggatcaggacaacgtgcaatccttctgcgcgttcgcgaaaaaagttcaggatcaggacaaatggacaatagctttttttttacatgaatgcaggttggttcttgcttaaaattcgtaatgtactgttttaagtcgtccgtagaaacgtcagaatagtgaaatggacaagtataaactcaatgtacttgatcagctctattttgttgccagtggtgtcatccatttactgaagctagtcaatcttcgaagttaagtcaaggttacttgtgatatatgtctatcagcaaaatgcgatcatattcccctcagctctaggacaatctctttatgcctttactgtgagacgaggcaaatgagcagaaactgaagtatctggtgccaagctgcttggattgcactcatggtatggtaggcttgagccttgaggagtggttattcccgccatgcctacacaaagagacgatgcttggtacgccttattcagcaggttagcatctgcagcttgctattgtcccattcttttcttgttgtttttcctttcctcatgtctattttttcctctttctgatccacccacactcaaccttgcctccttgctgtctgctgctcatcgccacttctcgtcttcgagccttcctgccgttgccttggtgagtctgtgttgacacttgcatcagcaatgacatttatggcgttatcctgctctagtgttcctggtcctaatgcagcatggttactgctagtagtgcctcccagaaatgtatttaactgaattttgttgtctctacagggatggcagagtcggtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcggtaaacgactctcttctcttctaccaatacatgatgatggtaaaacaccaaagatggattttgatagagtggatgcctctagaagaatgaggcgcatagtagaacaactacaacccatatgtgctaaagtatctaccattcttgatctagagttgttaggctctgccattgccaaattggagttcatgggctctaggcgtggcattggcggtgatattactacaagcagatccacaactacctcagaaagtatagagcctaaactgtatggaagggatcctgagaagaataccattgtagaaaatattaccaagggtgtgcactgccatcaacatctatcagttcttcctatagttggtcttgggggcataggaaagacaacccttacacagtacatatataatactaaagaagtgcaagatcatttccaaattagagtttgggcatgtgtgtcgcttgacttcaacgtgtacaagttgacacaagagattttaaattctatccctaaagctgaagatgaaatagatgatagtcagctgcaaagtttggaccaacttcagaagttgattgaaaagagattaaaacaaaaaaggtttttagttgttttggatgatatatggaagtgtggtgaagaagagtgggaaaggctcctagttccatttagaaaaagtcaagtaaatgggaacataattctagtcacaacccgattctttgatgtggcagaaaaggttaaaactaccagttgtaaagtgacacaacttgacagattgaatcctgaagaattttggaagttctttatggcatgtgtgtttgggtatggtgaaactaagcaacacaaagaagatagggacttgattaacattgggaaacaaatagttgaaaaactaaaaggttctcccctagcagccaaaactgtaggtaggttattgagaaataacactactcgagactattggacaagagttcttcaaagtaaagaatgggatttacaaaccaatgattatgatattatgcctgctttgaagcttagctatgactacctcccttttcatcttcaacagtgcttctcttattgtgctttgtttcctgaggaccacaagtttagcagtgaggagctaattcacttctggatagggctagacattctacatccagatcacccaagccaaacaattgaagatatagggcacaactacttgaatcagttggttaattatgagtttttcaaaaagaaatag
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| CDS seq | atggcagagtcggtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcggtaaacgactctcttctcttctaccaatacatgatgatggtaaaacaccaaagatggattttgatagagtggatgcctctagaagaatgaggcgcatagtagaacaactacaacccatatgtgctaaagtatctaccattcttgatctagagttgttaggctctgccattgccaaattggagttcatgggctctaggcgtggcattggcggtgatattactacaagcagatccacaactacctcagaaagtatagagcctaaactgtatggaagggatcctgagaagaataccattgtagaaaatattaccaagggtgtgcactgccatcaacatctatcagttcttcctatagttggtcttgggggcataggaaagacaacccttacacagtacatatataatactaaagaagtgcaagatcatttccaaattagagtttgggcatgtgtgtcgcttgacttcaacgtgtacaagttgacacaagagattttaaattctatccctaaagctgaagatgaaatagatgatagtcagctgcaaagtttggaccaacttcagaagttgattgaaaagagattaaaacaaaaaaggtttttagttgttttggatgatatatggaagtgtggtgaagaagagtgggaaaggctcctagttccatttagaaaaagtcaagtaaatgggaacataattctagtcacaacccgattctttgatgtggcagaaaaggttaaaactaccagttgtaaagtgacacaacttgacagattgaatcctgaagaattttggaagttctttatggcatgtgtgtttgggtatggtgaaactaagcaacacaaagaagatagggacttgattaacattgggaaacaaatagttgaaaaactaaaaggttctcccctagcagccaaaactgtaggtaggttattgagaaataacactactcgagactattggacaagagttcttcaaagtaaagaatgggatttacaaaccaatgattatgatattatgcctgctttgaagcttagctatgactacctcccttttcatcttcaacagtgcttctcttattgtgctttgtttcctgaggaccacaagtttagcagtgaggagctaattcacttctggatagggctagacattctacatccagatcacccaagccaaacaattgaagatatagggcacaactacttgaatcagttggttaattatgagtttttcaaaaagaaatag
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| Protein seq | MAESVAIRGAQWVVSKALSPLSDGLVEAWAASSALGPNIEALKTELLYAQAMLDNARGREIRSHALVELLQKLRRLAYNAEDVLDELDYFRIQDELEGTFETVDRGCFHDLVRDARHTTKAAAKQLECTSCFSSSSMPEHGGARRRVLCGAWLCCGADEKQSCKCACQLVNRASSTVRAVGKRLSSLLPIHDDGKTPKMDFDRVDASRRMRRIVEQLQPICAKVSTILDLELLGSAIAKLEFMGSRRGIGGDITTSRSTTTSESIEPKLYGRDPEKNTIVENITKGVHCHQHLSVLPIVGLGGIGKTTLTQYIYNTKEVQDHFQIRVWACVSLDFNVYKLTQEILNSIPKAEDEIDDSQLQSLDQLQKLIEKRLKQKRFLVVLDDIWKCGEEEWERLLVPFRKSQVNGNIILVTTRFFDVAEKVKTTSCKVTQLDRLNPEEFWKFFMACVFGYGETKQHKEDRDLINIGKQIVEKLKGSPLAAKTVGRLLRNNTTRDYWTRVLQSKEWDLQTNDYDIMPALKLSYDYLPFHLQQCFSYCALFPEDHKFSSEELIHFWIGLDILHPDHPSQTIEDIGHNYLNQLVNYEFFKKK |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0027860 | OsPr106_04g0027860.01 | Chr04 | 33330706 | 33332484 | + | NAM | ||
| CDS seq | atggcagagtcggtggccatccgcggtgcacagtgggttgtgagcaaggcgctgagcccgctgtccgatggcttggtagaggcgtgggcggccagctcggcgctcggccccaacatcgaagctctcaagacagagcttctctacgcacaggccatgctcgacaatgcccgtggcagggagatccgaagccatgctctggtggagttgctgcagaagctacggcggctagcgtacaacgccgaggacgtgctggacgagctggactacttccgcatccaggacgagctcgaaggcaccttcgagaccgtcgaccgtgggtgcttccacgacctcgtccgtgatgcacgccacacaaccaaggctgctgccaagcagctcgagtgcacctcctgcttctcttcttcgtccatgccagaacatggtggcgcaagaaggcgggtgctgtgtggcgcttggctgtgctgcggcgccgatgagaaacaatcctgcaagtgcgcgtgccagctcgtcaaccgtgctagcagcactgtccgcgctgtcggtaaacgactctcttctcttctaccaatacatgatgatggtaaaacaccaaagatggattttgatagagtggatgcctctagaagaatgaggcgcatagtagaacaactacaacccatatgtgctaaagtatctaccattcttgatctagagttgttaggctctgccattgccaaattggagttcatgggctctaggcgtggcattggcggtgatattactacaagcagatccacaactacctcagaaagtatagagcctaaactgtatggaagggatcctgagaagaataccattgtagaaaatattaccaagggtgtgcactgccatcaacatctatcagttcttcctatagttggtcttgggggcataggaaagacaacccttacacagtacatatataatactaaagaagtgcaagatcatttccaaattagagtttgggcatgtgtgtcgcttgacttcaacgtgtacaagttgacacaagagattttaaattctatccctaaagctgaagatgaaatagatgatagtcagctgcaaagtttggaccaacttcagaagttgattgaaaagagattaaaacaaaaaaggtttttagttgttttggatgatatatggaagtgtggtgaagaagagtgggaaaggctcctagttccatttagaaaaagtcaagtaaatgggaacataattctagtcacaacccgattctttgatgtggcagaaaaggttaaaactaccagttgtaaagtgacacaacttgacagattgaatcctgaagaattttggaagttctttatggcatgtgtgtttgggtatggtgaaactaagcaacacaaagaagatagggacttgattaacattgggaaacaaatagttgaaaaactaaaaggttctcccctagcagccaaaactgtaggtaggttattgagaaataacactactcgagactattggacaagagttcttcaaagtaaagaatgggatttacaaaccaatgattatgatattatgcctgctttgaagcttagctatgactacctcccttttcatcttcaacagtgcttctcttattgtgctttgtttcctgaggaccacaagtttagcagtgaggagctaattcacttctggatagggctagacattctacatccagatcacccaagccaaacaattgaagatatagggcacaactacttgaatcagttggttaattatgagtttttcaaaaagaaatag
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| Protein seq | MAESVAIRGAQWVVSKALSPLSDGLVEAWAASSALGPNIEALKTELLYAQAMLDNARGREIRSHALVELLQKLRRLAYNAEDVLDELDYFRIQDELEGTFETVDRGCFHDLVRDARHTTKAAAKQLECTSCFSSSSMPEHGGARRRVLCGAWLCCGADEKQSCKCACQLVNRASSTVRAVGKRLSSLLPIHDDGKTPKMDFDRVDASRRMRRIVEQLQPICAKVSTILDLELLGSAIAKLEFMGSRRGIGGDITTSRSTTTSESIEPKLYGRDPEKNTIVENITKGVHCHQHLSVLPIVGLGGIGKTTLTQYIYNTKEVQDHFQIRVWACVSLDFNVYKLTQEILNSIPKAEDEIDDSQLQSLDQLQKLIEKRLKQKRFLVVLDDIWKCGEEEWERLLVPFRKSQVNGNIILVTTRFFDVAEKVKTTSCKVTQLDRLNPEEFWKFFMACVFGYGETKQHKEDRDLINIGKQIVEKLKGSPLAAKTVGRLLRNNTTRDYWTRVLQSKEWDLQTNDYDIMPALKLSYDYLPFHLQQCFSYCALFPEDHKFSSEELIHFWIGLDILHPDHPSQTIEDIGHNYLNQLVNYEFFKKK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0027860 | OsPr106_04g0027860.02 | Chr04 | 33329273 | 33331544 | + | IsoSeq | ||
| CDS seq | cctcgcagatcgcagcaactgagctgcatagattgggtcttaagaaaaaaaagtcttcgtgccaaagcccacacattgcaaccacggtcgcctcgtctcgaacccactcggccccactcgccgtcgccggcgacaaagctcctcccgcgacgggtactccgccgtccgccctgcatgcgtgcagtgcagcggtgcagggtttccccgcatcgcccgacgcggcattgctgccggctgccggaggggagctcctcccctacgtcgacggcgcgtggagacggccgggccggcggcgggcggcggtgcgcagagaggagcggtgggcgcggctctgtgccttgcgcttgcaggggaccaggcttgcatccagggtgggttgcagatgtggccagtatccgggatccggcctggcggctttggatccatggcgatgccgtggcgggcggaggctggccagttcaggatcaggacaacgtgcaatccttctgcgcgttcgcgaaaaaagttcaggatcaggacaaatggacaatagctttttttttacatgaatgcagtggtgtcatccatttactgaagctagtcaatcttcga
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| Protein seq | PRRSQQLSCIDWVLRKKSLRAKAHTLQPRSPRLEPTRPHSPSPATKLLPRRVLRRPPCMRAVQRCRVSPHRPTRHCCRLPEGSSSPTSTARGDGRAGGGRRCAERSGGRGSVPCACRGPGLHPGWVADVASIRDPAWRLWIHGDAVAGGGWPVQDQDNVQSFCAFAKKVQDQDKWTIAFFLHECSGVIHLLKLVNLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.381253 | 3.404730 | 2.750773 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0626450 | SBH | 0.358722 | 0.170208 | 0.405655 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53496 | SBH | 0.332108 | 0.119212 | 0.141505 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0626450 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027380 | RBH | 0.155781 | 1.581032 | 1.468144 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028180 | SBH | 0.076469 | 0.710213 | 0.600454 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027890 | RBH | 0.369363 | 1.710174 | 1.452925 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027630 | SBH | 0.065660 | 0.063307 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027950 | RBH | 1.853218 | 19.699261 | 5.510958 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0503100 | SBH | 0.6623505 | 1.82568 | 1.842416 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026620 | SBH | 0.066260 | 0.133214 | 0.369819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0507000 | RBH | 0.2745435 | 0.2969485 | 0.9896195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027030 | SBH | 0.000000 | 0.258998 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026470 | SBH | 0.922922 | 10.440888 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026930 | SBH | 0.0 | 7.217812 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027420 | SBH | 0.276920 | 0.129517 | 0.472126 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027160 | SBH | 0.966941 | 0.878698 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026800 | RBH | 0.074867 | 0.877226 | 0.575971 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026690 | RBH | 0.0 | 1.515105 | 0.351088 |
