Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0018570 | OGI:04074690 | 7/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:25746866-25751516 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | ggagttgtctctgaatgatatattttgccacagaaaacgaccacttttacacacatttgggtcggaatggtacaaaatgtacatttgagtcgaaatgatcaacgaccaagtccagccaatcaactgaacacaaacagcatgatacaacttacatcagtacatggttaccttttgctttgcatctgtgaagtaaatggtgcttcaagagcaatcaaatctatcacggtgagtcctgatcagctgatggggtgaccatgcgtggattgtgccggtaggcatacttcttcgcccagtacaggtaattcaagaagccaagcagcccgataacagcaaccacccagtaaaacaagtcaaggtggctgttgttcaagcttgtaccctcgagccaccctctatggtgtccatgcctcgtagccttgttcaccagctccaccaggaacgtgcccatccatgaagcgagacccagctcgcaccagaacagcgccgtgccaatggacttcatatcctttggtgcttcgctgttgaagaactcaagcagcccgacgaacgatgtaacgtctgacacgccaagcaagaagaactgaggggcaagccagaagagggacatctgcacagctgcctccttcctctttctctcgacgactgctgcaacggccgatgcaactatcatggaggcaaagcctaagccaacacgttgcaggtgagtgataccgcaggcatatcctgtgcgcttgcgcatgaacggaacaaggaagcgatcatagacggcgagcattagcatctggaatgtgatggggatcacaaagagcgtcgcgggggagatatgtatcttgcccagccttgtgtttgtcatgctaccttgttgcacagtgaaagtgaggagcagagggtttgagatataaccgatcatggagctgatgaagaggggaagcattcgaagaacaatctttgtctcctccactttcattgtgctgcaaactgaccaggctccatcttcaccatggttgatggaggctttgtcaagaaatctggcaaaaaaaaagtgtgcagaagaatttataacatttactaaagaatcatattctcttaaaatccatgcatgatgtgtgatacccttaactgaaaaaatgtgtgtatcttgctgaagcttacttcagaaaatttgtaggacgtggtacttcaatagaatccagtccattacggttttcttgtgcttcctcaagtttctcgggaagttcatatttcctgttcttgaatgcaaccacaagaacctggaaaaggcaatttttcagataggcggcagatatggaatggtgattttctcttgagagatggaaatctattatatctataaagcaatagaaaaaagagccaccacgttcgctctcgcggcctaaaaattaccacgttaatcaaagaaaaaaagaaaaaaaaacaaacggacattattcttttggaaacatgacatactaggaacatactcacgcacgcattgtataggtttaggaaactgatcacaactcttaatcggatgaaaattagaagcaaaaaaacaaacgggcaggattctttttggaactgtgatataacaataaatattcatgtatggttatagtgtaggaaacggacaacagttaacaaaccaatcataattagattctttcatggaattagcatccatggcggtattagtttatacggttctgaattgtacacgattcatcccgtagtaataaatagatcgatactcctagcaatgaaaacaaaacgcaaaacacaaatatccagccataaatcttccagccgcaatcagctttaccaataaattagcaagacggaagttttgccgccggaatccacttcaataataaattggcacccaagaatgccataatcttatagcaaaggatcgtctaacaaataaaTttgtgtgctacaaattaacatattagattggtaataaaaggaacctctatataagagtacaatttagagataactaaaatttggaatttaaaaataaggaatactagaagatgggtttagagtccataaaaatacaattagaaataacagaaattcggaataaaaaaataaggaatagtgacagaagagtctagagcctatatatgaatttagaaccaattgaaagtcgaaaataaaaaataagaaaaattaaaagtaaagtttagagtccatataaaaatatatttagaaataactgaaattcataaattttttttaaaaaaaaaagaagattggaaaaagagtttagagtccatataggaatataatttagaaataattgaaatttgaaactaaaaaaaatattggaagaagaatctagactccatataggaatacaatttataaataacataaagtcataattaaaaataagaaatattggaagaacagtctattgttcatataggagtacaatttaaaaataacagaaatatgaaattaatagataagaaatattgaaagaggagtataaatTAtatatataaataaaatttagaaataactaaagtaaaaaacaataaataactttcacgcatatacattacagtatgaatattgcacattggttagttttatcaagttagtacataaataatttaaaattatgttgtcatttcaatctattttaataataaaatgtgaatatatatatatatatatatatggtattttatgggaaaaatataacgatgatgattGCgcgggccaccatgctagtttaagtttataacctgcagtatccgagttagagggcttccttctggtacttgattacggtagaaagggaggccagtggcaactatgagcaacccatgaagaattagcagtgcacacacgccaaatccaatgtcccaccccttgtagttctcgagccacactattagaatcaatcctataaatcctcctaaggagattccaaaggtgaaccagttgaagaaactggattgttggCgggattcagagggatcttcatggtcaaactgatctgctccaagtgatggcgtgcaagcacggatacagccttcactgaatgcccaggtgtacaagcctatgtgcaatatgacggtgttgaagccatgaacctcttcgcagttgcttagctctgcttcaatattgcaaggtggtggatggagtgaggggaggtaggcttgcagagcgagcaatccaagagcctgcacaagtagattgttaccttggaacttaaaccagtatgaagcagaaactacttgttcggtggctgtgagcaaagatagaaacttatatccagatattaagttttaaactagtgaaagtatctataagttaattgtctgaagaaaatcaatgctaatttaaccacaagcaaacaagaagatgccgatgtacttttttacatagaggtcctttaatatctttatcaagtaggcttcggatcaaggttatgccacagacccacagtaggtgatgaccaaaccatagttaaaaattcaacagaatatattcctttcAaaaaaaaaaaagttcaacagaatatgatctggtgttttggcttaattcacacctaactaattctgaaggagatataaaattgttttccttagcaacttgtaagaatcttgttttgtatgtatcccaagttcccagctactttgagcttgggaaaacgatttagcaacctcagcttttgaagtttcaggcaacctgcagctttttggatatcggtgtgattacagctgagaataatgttagaagaaaaaacagaggcaacatgtcaaataattttcatgggtttctttcaacatctgatgtaactatatgatgctattagtttacattcattagctgtgattaaaataactgcgacgagtactgtgttttttttccccttctcttggcaggctgtcactagtaaagataaaaagaaagtgaaatcaagaaatttcaatggatgatacccagaatatatagaccgttgaatagaccatgaggcaaattaccagaaactccaacggaccaaagagtagtatggttctagagcgagtgatgtacgagtctgagaggaaagctcctaataaagcaaatccagatgtggcaccaatgaagttagtaactgtggttgcagagcttgaaactcccatatgcatggttccatggagatatgtaaccaaattcagcatgtttggaatattttccatgtttgttaccactgacagaactacaagagagaacaagcataaaaaaacacttcgatttcaataggaaaacctactgttagtgagtaattacacaaataacgcaagaagccaggaacaatatattaatcaatggactcagtagagcaacttacagaacataaaccatgcagctctgactcctccatgtacctttctgtctatcgggtttcccctccagtccacaaagcctccaaccaccatcagctacagatgaattagcgtcttcttgcacttgattactacttcttcattgcatacttccattccatcataggaggtatatatagacatatggtatactttttttttcctcgcaaagtggccccagctaaataaagaaagatgacaggtgaaagatcattggctattctatgcaatagattatagatgttgcccccaacagaaccaac
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| CDS seq | atggtggttggaggctttgtggactggaggggaaacccgatagacagaaaggtacatggaggagtcagagctgcatggtttatgttctttctgtcagtggtaacaaacatggaaaatattccaaacatgctgaatttggttacatatctccatggaaccatgcatatgggagtttcaagctctgcaaccacagttactaacttcattggtgccacatctggatttgctttattaggagctttcctctcagactcgtacatcactcgctctagaaccatactactctttggtccgttggagtttctggctcttggattgctcgctctgcaagcctacctcccctcactccatccaccaccttgcaatattgaagcagagctaagcaactgcgaagaggttcttgtggttgcattcaagaacaggaaatatgaacttcccgagaaacttgaggaagcacaagaaaaccgtaatggactggattctattgaagtaccacgtcctacaaattttctgaaatttcttgacaaagcctccatcaaccatggtgaagatggagcctggtcagtttgcagcacaatgaaagtggaggagacaaagattgttcttcgaatgcttcccctcttcatcagctccatgatcggttatatctcaaaccctctgctcctcactttcactgtgcaacaaggtagcatgacaaacacaaggctgggcaagatacatatctcccccgcgacgctctttgtgatccccatcacattccagatgctaatgctcgccgtctatgatcgcttccttgttccgttcatgcgcaagcgcacaggatatgcctgcggtatcactcacctgcaacgtgttggcttaggctttgcctccatgatagttgcatcggccgttgcagcagtcgtcgagagaaagaggaaggaggcagctgtgcagatgtccctcttctggcttgcccctcagttcttcttgcttggcgtgtcagacgttacatcgttcgtcgggctgcttgagttcttcaacagcgaagcaccaaaggatatgaagtccattggcacggcgctgttctggtgcgagctgggtctcgcttcatggatgggcacgttcctggtggagctggtgaacaaggctacgaggcatggacaccatagagggtggctcgagggtacaagcttgaacaacagccaccttgacttgttttactgggtggttgctgttatcgggctgcttggcttcttgaattacctgtactgggcgaagaagtatgcctaccggcacaatccacgcatggtcaccccatcagctgatcaggactcaccgtga
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| Protein seq | MVVGGFVDWRGNPIDRKVHGGVRAAWFMFFLSVVTNMENIPNMLNLVTYLHGTMHMGVSSSATTVTNFIGATSGFALLGAFLSDSYITRSRTILLFGPLEFLALGLLALQAYLPSLHPPPCNIEAELSNCEEVLVVAFKNRKYELPEKLEEAQENRNGLDSIEVPRPTNFLKFLDKASINHGEDGAWSVCSTMKVEETKIVLRMLPLFISSMIGYISNPLLLTFTVQQGSMTNTRLGKIHISPATLFVIPITFQMLMLAVYDRFLVPFMRKRTGYACGITHLQRVGLGFASMIVASAVAAVVERKRKEAAVQMSLFWLAPQFFLLGVSDVTSFVGLLEFFNSEAPKDMKSIGTALFWCELGLASWMGTFLVELVNKATRHGHHRGWLEGTSLNNSHLDLFYWVVAVIGLLGFLNYLYWAKKYAYRHNPRMVTPSADQDSP |
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| Function | Protein NRT1/ PTR FAMILY 4.6 [UniProtKB/Swiss-Prot:Q8H157] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0018570 | OsPr106_04g0018570.01 | Chr04 | 25747086 | 25751516 | - | NAM | ||
| CDS seq | atggtggttggaggctttgtggactggaggggaaacccgatagacagaaaggtacatggaggagtcagagctgcatggtttatgttctttctgtcagtggtaacaaacatggaaaatattccaaacatgctgaatttggttacatatctccatggaaccatgcatatgggagtttcaagctctgcaaccacagttactaacttcattggtgccacatctggatttgctttattaggagctttcctctcagactcgtacatcactcgctctagaaccatactactctttggtccgttggagtttctggctcttggattgctcgctctgcaagcctacctcccctcactccatccaccaccttgcaatattgaagcagagctaagcaactgcgaagaggttcttgtggttgcattcaagaacaggaaatatgaacttcccgagaaacttgaggaagcacaagaaaaccgtaatggactggattctattgaagtaccacgtcctacaaattttctgaaatttcttgacaaagcctccatcaaccatggtgaagatggagcctggtcagtttgcagcacaatgaaagtggaggagacaaagattgttcttcgaatgcttcccctcttcatcagctccatgatcggttatatctcaaaccctctgctcctcactttcactgtgcaacaaggtagcatgacaaacacaaggctgggcaagatacatatctcccccgcgacgctctttgtgatccccatcacattccagatgctaatgctcgccgtctatgatcgcttccttgttccgttcatgcgcaagcgcacaggatatgcctgcggtatcactcacctgcaacgtgttggcttaggctttgcctccatgatagttgcatcggccgttgcagcagtcgtcgagagaaagaggaaggaggcagctgtgcagatgtccctcttctggcttgcccctcagttcttcttgcttggcgtgtcagacgttacatcgttcgtcgggctgcttgagttcttcaacagcgaagcaccaaaggatatgaagtccattggcacggcgctgttctggtgcgagctgggtctcgcttcatggatgggcacgttcctggtggagctggtgaacaaggctacgaggcatggacaccatagagggtggctcgagggtacaagcttgaacaacagccaccttgacttgttttactgggtggttgctgttatcgggctgcttggcttcttgaattacctgtactgggcgaagaagtatgcctaccggcacaatccacgcatggtcaccccatcagctgatcaggactcaccgtga
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| Protein seq | MVVGGFVDWRGNPIDRKVHGGVRAAWFMFFLSVVTNMENIPNMLNLVTYLHGTMHMGVSSSATTVTNFIGATSGFALLGAFLSDSYITRSRTILLFGPLEFLALGLLALQAYLPSLHPPPCNIEAELSNCEEVLVVAFKNRKYELPEKLEEAQENRNGLDSIEVPRPTNFLKFLDKASINHGEDGAWSVCSTMKVEETKIVLRMLPLFISSMIGYISNPLLLTFTVQQGSMTNTRLGKIHISPATLFVIPITFQMLMLAVYDRFLVPFMRKRTGYACGITHLQRVGLGFASMIVASAVAAVVERKRKEAAVQMSLFWLAPQFFLLGVSDVTSFVGLLEFFNSEAPKDMKSIGTALFWCELGLASWMGTFLVELVNKATRHGHHRGWLEGTSLNNSHLDLFYWVVAVIGLLGFLNYLYWAKKYAYRHNPRMVTPSADQDSP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0018570 | OsPr106_04g0018570.02 | Chr04 | 25746866 | 25747412 | - | IsoSeq | ||
| CDS seq | atgcctaccggcacaatccacgcatggtcaccccatcagctgatcaggactcaccgtgatagatttgattgc |
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| Protein seq | MPTGTIHAWSPHQLIRTHRDRFDC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 14.799523 | 0.738092 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0491500 | RBH | 0.220163 | 0.000000 | 0.623486 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41450 | RBH | 0.082680 | 0.000000 | 0.160384 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0491500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018170 | RBH | 0.000000 | 7.891736 | 0.545164 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018950 | RBH | 0.000000 | 1.176281 | 0.358577 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018660 | RBH | 0.157701 | 28.965307 | 1.945760 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018370 | RBH | 0.0 | 0.414421 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022280 | SBH | 7.545002 | 0.000000 | 7.586216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0383700 | SBH | 9.0941355 | 23.128197 | 28.875256 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017350 | SBH | 0.000000 | 0.962984 | 0.395520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0479800 | SBH | 1.6484185 | 1.970131 | 0.056156 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017850 | SBH | 0.062070 | 0.064055 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017700 | RBH | 0.190359 | 4.305089 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017780 | RBH | 0.000000 | 7.191635 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018200 | RBH | 0.0 | 0.841977 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018360 | RBH | 0.0 | 4.301220 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017670 | RBH | 0.0 | 1.460823 | 0.393474 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017590 | SBH | 0.000000 | 4.372428 | 1.183992 |
