Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0001150 | OGI:01107270 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:1559931-1561932 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atttatttcgatggcaagctcggctacagcactcaaagatgtaactattggccagcaaaactgcaaggtctttggccgtctaataagattatgggatgctctaaacatgagatcaaaatcagcagatccattgatcagcattgatgaaatcctattagatgaacatgtgtgtcaatctcttttgtcttacaccaaatattaaccattcatttacatttcgttggtctactcaatattaaccataacaatcttatgcataacaatcttgcagggttccatggcacaaatcagtgtaccaaaaaagcttgaaaaacaatttcgccccttgctaaatgaaggatcagtctacctgattactaatactactgctgttgatgctagaagaaagacttatatctatcagcaccaaaactacatgatccagttcaaacacgaaacaaaagtgaatcatctggaatctagaggatcaaccataccaaaattctctttcagcttttgcccatttgatcaaattccaggaaaaaccatcacctctaaacccctcataggtaatccttgctttttaatttacccctaaacacttcctattatacttgatattcttttaactttttcctaaagatttaattggggtagtcagccgtattggtccatatgatttcgcgagcccaacatcagacaaaaaactcagaagaattcaaattcagaaccaagagtatatgcctttttcaaacattaaactgatagttcaatatttcactaattgttttttatgctctacctttgtagagaacagactcaagaagtacttctttggggacaacacggagaatcatttaatgaagctgtagcacttgaaaaatcaaaggaaggaattgtagtagtcatctttgctggtcttactgcaggcaattttgcaggttcattccatgaaaagaatatgcctcctcacataacatacctacaaaatttaaacttatcatttaccacatacaattgcaggtaaaacagaagcatcttcaagctccgctactcaaattcatattaacctcgatataccacaggtggaacaatttcgctccaggtaatttcaatttaatcccttcaaactacttaaagttcaagtttcctgttcaatatttttctttttcgtatcaattatgatgccaacctatattgttgcaattttaagctataaactaggatctccaagccttcaacaacagcatcctaagattgtacgtttatccccacttcaagcagcaggaaaaatttacaacttagaagaaatatccgctatgcctgtttcagcttttcaggtaaaactgaacacataaataaacatctatattcttattggaattccatatttttcttcagacaagatataactcttataattttcttcatttaagggaggagttacttatagtgcagttgcaaaagtgtcttcaatactgtcatcaattaagtggtactacataggatgtcatcgttgtgacaaagggtacaacaatagttctgactccccaagatgtgattgtgcggtttcattccccaaaccaatatcagtttctcaccttacattccaacaattaaaaataatatgatataaataacatatatgccactgactattttacaatgctttaggtataaactccccgtgacaatcacagataaatcagggagtttagatgcagtggcattttcttttgttgctgaagatttagttgagcttgatgcagcccaagcttctcagaacatgaagatagactcagttgatcatctagtaactcttaataaagccattgcaaaaacaagactttttactataggaatgaatactgattcatcttctaagttccctattagctatgtgttcaaaaggagtttctcaattgatgatactatgccaaatcctctgctgacatctgaaaaggttagtaaatatcatctgaagatgctatttatcattggttcaatatttcaactgaattag
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| CDS seq | atggcaagctcggctacagcactcaaagatgtaactattggccagcaaaactgcaaggtctttggccgtctaataagattatgggatgctctaaacatgagatcaaaatcagcagatccattgatcagcattgatgaaatcctattagatgaacatggttccatggcacaaatcagtgtaccaaaaaagcttgaaaaacaatttcgccccttgctaaatgaaggatcagtctacctgattactaatactactgctgttgatgctagaagaaagacttatatctatcagcaccaaaactacatgatccagttcaaacacgaaacaaaagtgaatcatctggaatctagaggatcaaccataccaaaattctctttcagcttttgcccatttgatcaaattccaggaaaaaccatcacctctaaacccctcatagatttaattggggtagtcagccgtattggtccatatgatttcgcgagcccaacatcagacaaaaaactcagaagaattcaaattcagaaccaagaagaacagactcaagaagtacttctttggggacaacacggagaatcatttaatgaagctgtagcacttgaaaaatcaaaggaaggaattgtagtagtcatctttgctggtcttactgcaggcaattttgcaggtaaaacagaagcatcttcaagctccgctactcaaattcatattaacctcgatataccacaggtggaacaatttcgctccaggtataaactccccgtgacaatcacagataaatcagggagtttagatgcagtggcattttcttttgttgctgaagatttagttgagcttgatgcagcccaagcttctcagaacatgaagatagactcagttgatcatctagtaactcttaataaagccattgcaaaaacaagactttttactataggaatgaatactgattcatcttctaagttccctattagctatgtgttcaaaaggagtttctcaattgatgatactatgccaaatcctctgctgacatctgaaaaggttagtaaatatcatctgaagatgctatttatcattggttcaatatttcaactgaattag
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| Protein seq | MASSATALKDVTIGQQNCKVFGRLIRLWDALNMRSKSADPLISIDEILLDEHGSMAQISVPKKLEKQFRPLLNEGSVYLITNTTAVDARRKTYIYQHQNYMIQFKHETKVNHLESRGSTIPKFSFSFCPFDQIPGKTITSKPLIDLIGVVSRIGPYDFASPTSDKKLRRIQIQNQEEQTQEVLLWGQHGESFNEAVALEKSKEGIVVVIFAGLTAGNFAGKTEASSSSATQIHINLDIPQVEQFRSRYKLPVTITDKSGSLDAVAFSFVAEDLVELDAAQASQNMKIDSVDHLVTLNKAIAKTRLFTIGMNTDSSSKFPISYVFKRSFSIDDTMPNPLLTSEKVSKYHLKMLFIIGSIFQLN |
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| Function | Replication protein A 70 kDa DNA-binding subunit C [UniProtKB/Swiss-Prot:Q65XV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0001150 | OsPr106_04g0001150.01 | Chr04 | 1559931 | 1561932 | + | NAM | ||
| CDS seq | atggcaagctcggctacagcactcaaagatgtaactattggccagcaaaactgcaaggtctttggccgtctaataagattatgggatgctctaaacatgagatcaaaatcagcagatccattgatcagcattgatgaaatcctattagatgaacatggttccatggcacaaatcagtgtaccaaaaaagcttgaaaaacaatttcgccccttgctaaatgaaggatcagtctacctgattactaatactactgctgttgatgctagaagaaagacttatatctatcagcaccaaaactacatgatccagttcaaacacgaaacaaaagtgaatcatctggaatctagaggatcaaccataccaaaattctctttcagcttttgcccatttgatcaaattccaggaaaaaccatcacctctaaacccctcatagatttaattggggtagtcagccgtattggtccatatgatttcgcgagcccaacatcagacaaaaaactcagaagaattcaaattcagaaccaagaagaacagactcaagaagtacttctttggggacaacacggagaatcatttaatgaagctgtagcacttgaaaaatcaaaggaaggaattgtagtagtcatctttgctggtcttactgcaggcaattttgcaggtaaaacagaagcatcttcaagctccgctactcaaattcatattaacctcgatataccacaggtggaacaatttcgctccaggtataaactccccgtgacaatcacagataaatcagggagtttagatgcagtggcattttcttttgttgctgaagatttagttgagcttgatgcagcccaagcttctcagaacatgaagatagactcagttgatcatctagtaactcttaataaagccattgcaaaaacaagactttttactataggaatgaatactgattcatcttctaagttccctattagctatgtgttcaaaaggagtttctcaattgatgatactatgccaaatcctctgctgacatctgaaaaggttagtaaatatcatctgaagatgctatttatcattggttcaatatttcaactgaattag
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| Protein seq | MASSATALKDVTIGQQNCKVFGRLIRLWDALNMRSKSADPLISIDEILLDEHGSMAQISVPKKLEKQFRPLLNEGSVYLITNTTAVDARRKTYIYQHQNYMIQFKHETKVNHLESRGSTIPKFSFSFCPFDQIPGKTITSKPLIDLIGVVSRIGPYDFASPTSDKKLRRIQIQNQEEQTQEVLLWGQHGESFNEAVALEKSKEGIVVVIFAGLTAGNFAGKTEASSSSATQIHINLDIPQVEQFRSRYKLPVTITDKSGSLDAVAFSFVAEDLVELDAAQASQNMKIDSVDHLVTLNKAIAKTRLFTIGMNTDSSSKFPISYVFKRSFSIDDTMPNPLLTSEKVSKYHLKMLFIIGSIFQLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0009850 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009980 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010040 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018060 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017840 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017170 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017270 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018080 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017490 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017680 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017740 | SBH | 0.0 | 0.0 | 0.0 |
