Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0018060 | OGI:08031150 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:22899372-22901349 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaattcagttgaaatattgaaccaatgataaatagcatcttcagatgatatttgctaaccttttcagatgtcagcagaggatttggcatagtatcatcaattgagaaactccttttgagcacatagctgatagggaacttagaagatgaatcagtattcattcctatagtaaaaagtcttgtttttccaatggctttattaagagttactggatgttcaactgagtctatcttcatgttctgagaagcttgggctgcatcaagctcaactaaatcttcagcaacaaaagaaaatgccactgcatctaaactccctgatttatctgtgattgtcacggggagtttatacctaaagcattgtaaaatagtcagtggcatatatgttatttatatcatattatttttaattgttggaatgtaaggtgagaagctgacattggtttggggaatgaaaccgcacagtcacatcttggggagtcagaactattgttgtaccctttgtcacaacgatgacatcctatgtagtaccacttaattgatgacagtattgaagacacttttgcaattgcactataagtaactcctcccttaagtgaagaaaattataagagttatatgttgtctgaagaaaaatatggaattccaataagaatatagatggttgtttatgtgttcagttttacctgaaaagctgaaacaggcatagcagatatttcttctaagttgtaaatttttcctgctgcttgaactagggataaacgtacaatcttagggagctgttgttgaaggcttggagatcccagtttatagcttaaaattgcaacaatataggttggcatcataattgatacgaaaaagaaaactattgaacaagaaacttgaactttaagtagttttaagggattaaattgaaattacctggagcgaaattgttccacctgtggtatatcgaggtcaatatgaatttgagtagcggagcttgaagatgcttctgttttacctacaattgtatgtggtaaatgataagtttaaattttgtaggtatgttatgtgaggaggcatattcttttcatggaatgaacctgcaaaattgcctgcagtaagaccagcaaagatgactactacaattccttcctttgatttttcaagtgttacagcttcattaaatgattctccgtattgtccccatagaagtacttcttgagtctgttctctacaaaggtagagcataaaaacaattagtgaaatattgaattatcagtttaatgtttgaaaaagacatatactcttggttctgaatttgaattcttctgagttttttgtctgatgttgggctcgcgaaatcatatggaccaatacggctgactaccccaattaaatctgaaggaaaaagttaaaagaatgtcaagtataataggaagtgtttaggggtaaattaaaaagcaaggattatctaagaggggtttagaggtgatggtttttcctggaatttgatcaaatgggcaaaagccgaaagagaattttggtatggttgatcctctagattccagatgattcacttttgtttcgtgtttgaactggatcatgtagctttggtgctgatagatataagtctttcttctagcatcaacagcagtagtattagtaatcaggtagactgatccttcatttagcaaggggcgaaattgtttttcaagcttttttggtacactgatttgtgccatggaaccctgcaagattgtgatgcataagattgttatggttaatattgagtagaccaacgaaatgtaaatgaatggttaatatttggtgtaagacaaaagagattgacacacatgttcatctaataggattccatcaatgctgatcaatggatctgctgattttgatctcatgtttagagcatcccataatcttattagacggccaaaaaccttgcagttttgctggccaatagttacatctttgagtgctgtag
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| CDS seq | atgagatcaaaatcagcagatccattgatcagcattgatggaatcctattagatgaacatggttccatggcacaaatcagtgtaccaaaaaagcttgaaaaacaatttcgccccttgctaaatgaaggatcagtctacctgattactaatactactgctgttgatgctagaagaaagacttatatctatcagcaccaaagctacatgatccaccgtattggtccatatgatttcgcgagcccaacatcagacaaaaaactcagaagaattcaaattcagaaccaagaagaacagactcaagaagtacttctatggggacaatacggagaatcatttaatgaagctgtaacacttgaaaaatcaaaggaaggaattgtagtagtcatctttgctggtcttactgcaggcaattttgcaggtaaaacagaagcatcttcaagctccgctactcaaattcatattgacctcgatataccacaggtggaacaatttcgctccaggtataaactccccgtgacaatcacagataaatcagggagtttagatgcagtggcattttcttttgttgctgaagatttagttgagcttgatgcagcccaagcttctcagaacatgaagatagactcagttgaacatccagtaactcttaataaagccattggaaaaacaagactttttactataggaatgaatactgattcatcttctaagttccctatcagctatgtgctcaaaaggagtttctcaattgatgatactatgccaaatcctctgctgacatctgaaaaggttagcaaatatcatctgaagatgctatttatcattggttcaatatttcaactgaattag
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| Protein seq | MRSKSADPLISIDGILLDEHGSMAQISVPKKLEKQFRPLLNEGSVYLITNTTAVDARRKTYIYQHQSYMIHRIGPYDFASPTSDKKLRRIQIQNQEEQTQEVLLWGQYGESFNEAVTLEKSKEGIVVVIFAGLTAGNFAGKTEASSSSATQIHIDLDIPQVEQFRSRYKLPVTITDKSGSLDAVAFSFVAEDLVELDAAQASQNMKIDSVEHPVTLNKAIGKTRLFTIGMNTDSSSKFPISYVLKRSFSIDDTMPNPLLTSEKVSKYHLKMLFIIGSIFQLN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0018060 | OsARC_08g0018060.01 | Chr08 | 22899372 | 22901349 | - | NAM | ||
| CDS seq | atgagatcaaaatcagcagatccattgatcagcattgatggaatcctattagatgaacatggttccatggcacaaatcagtgtaccaaaaaagcttgaaaaacaatttcgccccttgctaaatgaaggatcagtctacctgattactaatactactgctgttgatgctagaagaaagacttatatctatcagcaccaaagctacatgatccaccgtattggtccatatgatttcgcgagcccaacatcagacaaaaaactcagaagaattcaaattcagaaccaagaagaacagactcaagaagtacttctatggggacaatacggagaatcatttaatgaagctgtaacacttgaaaaatcaaaggaaggaattgtagtagtcatctttgctggtcttactgcaggcaattttgcaggtaaaacagaagcatcttcaagctccgctactcaaattcatattgacctcgatataccacaggtggaacaatttcgctccaggtataaactccccgtgacaatcacagataaatcagggagtttagatgcagtggcattttcttttgttgctgaagatttagttgagcttgatgcagcccaagcttctcagaacatgaagatagactcagttgaacatccagtaactcttaataaagccattggaaaaacaagactttttactataggaatgaatactgattcatcttctaagttccctatcagctatgtgctcaaaaggagtttctcaattgatgatactatgccaaatcctctgctgacatctgaaaaggttagcaaatatcatctgaagatgctatttatcattggttcaatatttcaactgaattag
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| Protein seq | MRSKSADPLISIDGILLDEHGSMAQISVPKKLEKQFRPLLNEGSVYLITNTTAVDARRKTYIYQHQSYMIHRIGPYDFASPTSDKKLRRIQIQNQEEQTQEVLLWGQYGESFNEAVTLEKSKEGIVVVIFAGLTAGNFAGKTEASSSSATQIHIDLDIPQVEQFRSRYKLPVTITDKSGSLDAVAFSFVAEDLVELDAAQASQNMKIDSVEHPVTLNKAIGKTRLFTIGMNTDSSSKFPISYVLKRSFSIDDTMPNPLLTSEKVSKYHLKMLFIIGSIFQLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g34850 | RBH | 0.046532 | 0.048489 | 0.015589 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0009850 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022450 | SBH | 0.560360 | 3.691345 | 6.066183 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010040 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0350800 | RBH | 0.54169 | 2.7581155 | 1.1273075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017840 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0368200 | RBH | 0.0456625 | 0.2565395 | 0.1708045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017740 | RBH | 0.0 | 0.0 | 0.0 |
