Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsPr106_03g0034880 OGI:03087640 | 16/16 PR 106 | Os127742RS1 | Gramene(+IsoSeq) Chr03:33665377-33670460
Gene Symbol RLCK117, OsRLCK117
DNA seq

aaaaaaactcaaaatcccttAtatattattatatattattggatcgaaggagtactccgcatatggtagtacagaaatgggcaagaaaggacgagcacccactggacgctgttatgaacatctttcaagtttcaacaagtgaacactccaagcttgctaaatcatgatctaccaaaagcgaaggcttctcatcaacaatcgtccagttatccatgagtcgccgacttgcgatattaaggcgtcccataacataacacaaagattggccatcccataacaccatcaaaggttgctactgctgtgggggcgtgcttagcctgtagtactgctcgagtacagtgggctaacataaagatcctccattcaggtcagcggccaaatcttccatggatcgccagcatgccagaattcaaggattgcagcaaggaattctggagatggattggcctgcagaaatttcttgtaaatttccaacaagaaatttcatcgtcccaccgcatcatgacattcgatttccaacgaagagaaccaagcttagcagtccacgaggcgtacaaacctatcatctgtaagcttgactacgttatgcccgcatgccttgtactgcatggatgaacaagaaaaagaagcgcccacatgttaggcaaccatacatatgatcaaaccaggtaaaagactcaatcagagactaacatctcaccctctcagaaaacaaggtactaCGcttgtaggacatgctaggcacagccagactccctcagacttctcgttccgccgagtagcattacttagttccgatctatcatagtcacatggtaacaagggttcaactgccaagcatcctacttgctcagcaacaaggtatcgatttactggctcgtggccagtttgtccattaatttgcttgaaacatcattggcagttgtgaccaacagaatcctccacagcctatatatgagaaatcaatgacttcataaatgtgcattcatatatcatacagaaaaaactgaaccctactctaattgatgaaatagtgcaccatcaaattggacatgtaatgatataatttacataacatcatacaagcagaaatcagttatggtcatctacaaaaaggaaaatgaacttactctggtagcaaatcatctgatcaagatcaccaacttcatcccTctgatgttccattgcttcctgcagataaaattacatcaataatatatccaagaataatgcataatttcataataaatggccataaaatgaatcagcagtgatttgaagaaagaacaagcacatgttttaacatatcaacctcacatgagggaacaagcacatgtttctgctacccactaagcttcttggagtatcgataagtcaatattggttgacgaaagatacagatgactgaaactcgttgctgatccaggcttccacagaaatttcatgtcttcatgcacaaaataattataccggaaagctatcgtacagttttacagaattgtaggtatagtataagttgacaggacaatttaattagagtaggaaccagatatattaaaaatatgctctctaaaatgaacacggatatcacatggggacacttgtgttgaacctatgttttcatgattcttaaacacaatcacatgcggaaaaaaaatggttacactacaaatgtaccaatcaaagtttggtaaaaaaaagtgcagcaaaattagcagatatggaaagttggctcattgtacctatatcagtttgtaaacatcggatcaaccttgaattgctattcctagtaagaaggcggtctgagttcctttagtcgtcgaacaacttgcttcattgtgggcctggatgaaagagagtcgacggtacacttgataccgaggtgaagaatctcaactaagtcatcatgtggggccacatcccacagaccttctatgaagaactcacgggctcgacccttctgcagaagcatgcaagcccaggcaacaatgttgaagccatttccatatggagaaaaagaagggtccagtgctttcttgtctgaaataagctcaagaagtacaactccatagctgtacaTCTGCCTTATCAGAAACACGACATGTCATGGCATACTCTGGAGCAACATATCCAAAAGTACCTGCTACACCAGTTGTTGCGTGTGTTTCTGAATTCCCGAGTAGTCTTGCTAATCCAAAATCAGAAAGGTATGCATTGTATTCATTATCAAGTAAaaatgttgcttggtttcacgtctcggtgcagaatgcgtgggacacagctatcatgaaggaatccaagtgcacgtgcaatatctagagcaattttgtgaagcattctccagtcaataggtctcttagccctttcttgtataaatctttccaaattaccaccaggaagaaaattatatataagaaacatctctgaatcactgagatggtatcctatgagtgtcacaagattgggatggcggcacctcccaagagtttttacctctgcttggaattgctgaataccttggaaccttccaatcgcaagcctctttatcgccaccagaactccaggtgcaatctcagctttgtatgttgctccaaagcCAccacttccaatacaattgcttgcattaaaactccccgtagcacgtacaacagtctcatacgtcaatggagcaccaatatccacaaaaacagtcacttcccttctcctgattgaacgtcttgactgtcttgatgcacatttccgtgtgtaaatatataggataatcagagccaagagaactgcaacaatagctgatgctgatgtaattgaggcaatctctaTtttgctgaagccgccaccactatcaacagttgcactatctgatggtggaacatctccttctgcgagtgatcgggccttcattactgtatttgcgagtgtagacaacccacaaggctggagggatggatttccctgaatactgtcgcatgccaatgagtgcatattcaaaggcaatgggccagacaagttattgaatgaaatgttaaaaatggatagtgatgctgatggggcaatatcaggaatgtttccggaaagcttattattgttcagcaaaagtgaagtaagatatgtcagtgtcacaagattcctagggatctttccagatagggagttagacgagagatccaaaacctccagtgatctcaacttacccaaacaggatggtatggtgccactgagattattctcagctaatgacagaaatttcaagctcttaagctctttgaaactggaaggaatttgaccctcaagcaaattcctactgatgtccatcttgacaagagcactCAAcaaaccaatgttaccaggcatcactcctgttattcgattgccagcaagatccaatgctctgatagcactgcattttgtactcatttcttctgtgagcccaccagatatcttgttgtcccggaaactgacaatcaacccctccacattattacactgttccagcaaaatttcatgcaaagatcctgtgaagttattgtaatcaacatgaaaagcatacaatatcttgttcccaaatcggtctgcactaaatggcaatgatgtaaggtggcctccaagattgttatttgcaaaattatggtatacaacagaacaaTttcctgatttgcaataccccgatgatggctgtgctagagctttggacatgaagaatgacggataacgagatggcatgtcatccaaaagctggggtgtgcaacctttgttagcacatgctggaattgtgccggatagttcatttctgctgacatcaaaaacagccatacaatgcggacaaagaccgttatcaatagaaCcggacaatttattcgagctgaggttgagaaacttgaggttactgcactgccctagctcccttggaatcactccagagagtaagTtctccgcaaggttaaccatttccaaactatgacaccttccccaattgctcggaatgttcccttcaaaacctgcccttggcgcccatagcatccgaagctttggcaaagctgtcacactttccggaattcctcctataaacatattgaactcagataaattcacagcatcaaactggctcgtcaatacgagtaccgacaaatccatgcaattccctagttccattggaaccggaccgttcaatcggttactcgatatgtccaaaacctgcaacctcctcaaccttccaatctctggtggaattgaaccttccagcaaattggagaacagctgcagggagcggagctcccgacaatcccccaattctgagggaattcttccggtaagaaggttccgggacaagtcaagcagcttcaacttgggcaagctgccaagaacacccggcaccgagccggtgaggcggttgccggaaaggttcaacctcatcaagctcttgcagtccgagagagagccctgaatctcaccatgcagacggttggaggcgaggtcaagcaccctcatcCGcggcgggaaggcgagaggaagcgcgccatggagagagttcccCGcgaggttgaccacctcgagcttctccagcctccagatctccgcggggatctcgccgcgaaggccgcgcgagggtaaggagagctccctcagctcggtgaggagCcccaccgccggggaaagctcgccggcgagctccgagctccccgaggcagggggcgcggcgacggcgacggcgacgacccggcgactcgcatcgcaggtcaccccgggccaggagcagtggtcagcgacggcggagcccgtcggccaccgccccagcagcccggcggcgccccagagctcgaggagcgccgatctgtcccgttcttggacacggtcggaagaggcgcggacgcggacggcgagcaccagcaggaggaggaagaaggaggaggaggccgcgctccggcgagccgccaccatctccggccagccgagtgcgccgacgacggagacgacctggccctggcgaagaacgacgcggcggaggcggcgcggcttccggtaggtggagaggcgacgacgacgaggtggaggagaagaagaaGagaagagaagaggagacgacgact

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CDS seq

atggtggcggctcgccggagcgcggcctcctcctccttcttcctcctcctgctggtgctcgccgtccgcgtccgcgcctcttccgaccgtgtccaagaacgggacagatcggcgctcctcgagctctggggcgccgccgggctgctggggcggtggccgacgggctccgccgtcgctgaccactgctcctggcccggggtgacctgcgatgcgagtcgccgggtcgtcgccgtcgccgtcgccgcgccccctgcctcggggagctcggagctcgccggcgagctttccccggcggtgggGctcctcaccgagctgagggagctctccttaccctcgcgcggccttcgcggcgagatccccgcggagatctggaggctggagaagctcgaggtggtcaacctcgCGgggaactctctccatggcgcgcttcctctcgccttcccgccgCGgatgagggtgcttgacctcgcctccaaccgtctgcatggtgagattcagggctctctctcggactgcaagagcttgatgaggttgaacctttccggcaaccgcctcaccggctcggtgccgggtgttcttggcagcttgcccaagttgaagctgcttgacttgtcccggaaccttcttaccggaagaattccctcagaattgggggattgtcgggagctccgctccctgcagctgttctccaatttgctggaaggttcaattccaccagagattggaaggttgaggaggttgcaggttttggacatatcgagtaaccgattgaacggtccggttccaatggaactagggaattgcatggatttgtcggtactcgtattgacgagccagtttgatgctgtgaatttatctgagttcaatatgtttataggaggaattccggaaagtgtgacagctttgccaaagcttcggatgctatgggcgccaagggcaggttttgaagggaacattccgagcaattggggaaggtgtcatagtttggaaatggttaaccttgcggagaActtactctctggagtgattccaagggagctagggcagtgcagtaacctcaagtttctcaacctcagctcgaataaattgtccgGttctattgataacggtctttgtccgcattgtatggctgtttttgatgtcagcagaaatgaactatccggcacaattccagcatgtgctaacaaaggttgcacaccccagcttttggatgacatgccatctcgttatccgtcattcttcatgtccaaagctctagcacagccatcatcggggtattgcaaatcaggaaAttgttctgttgtataccataattttgcaaataacaatcttggaggccaccttacatcattgccatttagtgcagaccgatttgggaacaagatattgtatgcttttcatgttgattacaataacttcacaggatctttgcatgaaattttgctggaacagtgtaataatgtggaggggttgattgtcagtttccgggacaacaagatatctggtgggctcacagaagaaatgagtacaaaatgcagtgctatcagagcattggatcttgctggcaatcgaataacaggagtgatgcctggtaacattggtttgTTGagtgctcttgtcaagatggacatcagtaggaatttgcttgagggtcaaattccttccagtttcaaagagcttaagagcttgaaatttctgtcattagctgagaataatctcagtggcaccataccatcctgtttgggtaagttgagatcactggaggttttggatctctcgtctaactccctatctggaaagatccctaggaatcttgtgacactgacatatcttacttcacttttgctgaacaataataagctttccggaaacattcctgatattgccccatcagcatcactatccatttttaacatttcattcaataacttgtctggcccattgcctttgaatatgcactcattggcatgcgacagtattcagggaaatccatccctccagccttgtgggttgtctacactcgcaaatacagtaatgaaggcccgatcactcgcagaaggagatgttccaccatcagatagtgcaactgttgatagtggtggcggcttcagcaaaAtagagattgcctcaattacatcagcatcagctattgttgcagttctcttggctctgattatcctatatatttacacacggaaatgtgcatcaagacagtcaagacgttcaatcaggagaagggaagtgactgtttttgtggatattggtgctccattgacgtatgagactgttgtacgtgctacggggagttttaatgcaagcaattgtattggaagtggTGgctttggagcaacatacaaagctgagattgcacctggagttctggtggcgataaagaggcttgcgattggaaggttccaaggtattcagcaattccaagcagaggtaaaaactcttgggaggtgccgccatcccaatcttgtgacactcataggataccatctcagtgattcagagatgtttcttatatataattttcttcctggtggtaatttggaaagatttatacaagaaagggctaagagacctattgactggagaatgcttcacaaaattgctctagatattgcacgtgcacttggattccttcatgatagctgtgtcccacgcattctgcaccgagacgtgaaaccaagcaacatttTTACTTGA

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Protein seq

MVAARRSAASSSFFLLLLVLAVRVRASSDRVQERDRSALLELWGAAGLLGRWPTGSAVADHCSWPGVTCDASRRVVAVAVAAPPASGSSELAGELSPAVGLLTELRELSLPSRGLRGEIPAEIWRLEKLEVVNLAGNSLHGALPLAFPPRMRVLDLASNRLHGEIQGSLSDCKSLMRLNLSGNRLTGSVPGVLGSLPKLKLLDLSRNLLTGRIPSELGDCRELRSLQLFSNLLEGSIPPEIGRLRRLQVLDISSNRLNGPVPMELGNCMDLSVLVLTSQFDAVNLSEFNMFIGGIPESVTALPKLRMLWAPRAGFEGNIPSNWGRCHSLEMVNLAENLLSGVIPRELGQCSNLKFLNLSSNKLSGSIDNGLCPHCMAVFDVSRNELSGTIPACANKGCTPQLLDDMPSRYPSFFMSKALAQPSSGYCKSGNCSVVYHNFANNNLGGHLTSLPFSADRFGNKILYAFHVDYNNFTGSLHEILLEQCNNVEGLIVSFRDNKISGGLTEEMSTKCSAIRALDLAGNRITGVMPGNIGLLSALVKMDISRNLLEGQIPSSFKELKSLKFLSLAENNLSGTIPSCLGKLRSLEVLDLSSNSLSGKIPRNLVTLTYLTSLLLNNNKLSGNIPDIAPSASLSIFNISFNNLSGPLPLNMHSLACDSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIASITSASAIVAVLLALIILYIYTRKCASRQSRRSIRRREVTVFVDIGAPLTYETVVRATGSFNASNCIGSGGFGATYKAEIAPGVLVAIKRLAIGRFQGIQQFQAEVKTLGRCRHPNLVTLIGYHLSDSEMFLIYNFLPGGNLERFIQERAKRPIDWRMLHKIALDIARALGFLHDSCVPRILHRDVKPSNIFT

Function LRR receptor-like serine/threonine-protein kinase RPK2 [UniProtKB/Swiss-Prot:Q9S7I6]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsPr106_03g0034880 OsPr106_03g0034880.01 Chr03 33665481 33670311 - NAM
CDS seq

atggtggcggctcgccggagcgcggcctcctcctccttcttcctcctcctgctggtgctcgccgtccgcgtccgcgcctcttccgaccgtgtccaagaacgggacagatcggcgctcctcgagctctggggcgccgccgggctgctggggcggtggccgacgggctccgccgtcgctgaccactgctcctggcccggggtgacctgcgatgcgagtcgccgggtcgtcgccgtcgccgtcgccgcgccccctgcctcggggagctcggagctcgccggcgagctttccccggcggtgggGctcctcaccgagctgagggagctctccttaccctcgcgcggccttcgcggcgagatccccgcggagatctggaggctggagaagctcgaggtggtcaacctcgCGgggaactctctccatggcgcgcttcctctcgccttcccgccgCGgatgagggtgcttgacctcgcctccaaccgtctgcatggtgagattcagggctctctctcggactgcaagagcttgatgaggttgaacctttccggcaaccgcctcaccggctcggtgccgggtgttcttggcagcttgcccaagttgaagctgcttgacttgtcccggaaccttcttaccggaagaattccctcagaattgggggattgtcgggagctccgctccctgcagctgttctccaatttgctggaaggttcaattccaccagagattggaaggttgaggaggttgcaggttttggacatatcgagtaaccgattgaacggtccggttccaatggaactagggaattgcatggatttgtcggtactcgtattgacgagccagtttgatgctgtgaatttatctgagttcaatatgtttataggaggaattccggaaagtgtgacagctttgccaaagcttcggatgctatgggcgccaagggcaggttttgaagggaacattccgagcaattggggaaggtgtcatagtttggaaatggttaaccttgcggagaActtactctctggagtgattccaagggagctagggcagtgcagtaacctcaagtttctcaacctcagctcgaataaattgtccgGttctattgataacggtctttgtccgcattgtatggctgtttttgatgtcagcagaaatgaactatccggcacaattccagcatgtgctaacaaaggttgcacaccccagcttttggatgacatgccatctcgttatccgtcattcttcatgtccaaagctctagcacagccatcatcggggtattgcaaatcaggaaAttgttctgttgtataccataattttgcaaataacaatcttggaggccaccttacatcattgccatttagtgcagaccgatttgggaacaagatattgtatgcttttcatgttgattacaataacttcacaggatctttgcatgaaattttgctggaacagtgtaataatgtggaggggttgattgtcagtttccgggacaacaagatatctggtgggctcacagaagaaatgagtacaaaatgcagtgctatcagagcattggatcttgctggcaatcgaataacaggagtgatgcctggtaacattggtttgTTGagtgctcttgtcaagatggacatcagtaggaatttgcttgagggtcaaattccttccagtttcaaagagcttaagagcttgaaatttctgtcattagctgagaataatctcagtggcaccataccatcctgtttgggtaagttgagatcactggaggttttggatctctcgtctaactccctatctggaaagatccctaggaatcttgtgacactgacatatcttacttcacttttgctgaacaataataagctttccggaaacattcctgatattgccccatcagcatcactatccatttttaacatttcattcaataacttgtctggcccattgcctttgaatatgcactcattggcatgcgacagtattcagggaaatccatccctccagccttgtgggttgtctacactcgcaaatacagtaatgaaggcccgatcactcgcagaaggagatgttccaccatcagatagtgcaactgttgatagtggtggcggcttcagcaaaAtagagattgcctcaattacatcagcatcagctattgttgcagttctcttggctctgattatcctatatatttacacacggaaatgtgcatcaagacagtcaagacgttcaatcaggagaagggaagtgactgtttttgtggatattggtgctccattgacgtatgagactgttgtacgtgctacggggagttttaatgcaagcaattgtattggaagtggTGgctttggagcaacatacaaagctgagattgcacctggagttctggtggcgataaagaggcttgcgattggaaggttccaaggtattcagcaattccaagcagaggtaaaaactcttgggaggtgccgccatcccaatcttgtgacactcataggataccatctcagtgattcagagatgtttcttatatataattttcttcctggtggtaatttggaaagatttatacaagaaagggctaagagacctattgactggagaatgcttcacaaaattgctctagatattgcacgtgcacttggattccttcatgatagctgtgtcccacgcattctgcaccgagacgtgaaaccaagcaacatttTTACTTGA

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Protein seq

MVAARRSAASSSFFLLLLVLAVRVRASSDRVQERDRSALLELWGAAGLLGRWPTGSAVADHCSWPGVTCDASRRVVAVAVAAPPASGSSELAGELSPAVGLLTELRELSLPSRGLRGEIPAEIWRLEKLEVVNLAGNSLHGALPLAFPPRMRVLDLASNRLHGEIQGSLSDCKSLMRLNLSGNRLTGSVPGVLGSLPKLKLLDLSRNLLTGRIPSELGDCRELRSLQLFSNLLEGSIPPEIGRLRRLQVLDISSNRLNGPVPMELGNCMDLSVLVLTSQFDAVNLSEFNMFIGGIPESVTALPKLRMLWAPRAGFEGNIPSNWGRCHSLEMVNLAENLLSGVIPRELGQCSNLKFLNLSSNKLSGSIDNGLCPHCMAVFDVSRNELSGTIPACANKGCTPQLLDDMPSRYPSFFMSKALAQPSSGYCKSGNCSVVYHNFANNNLGGHLTSLPFSADRFGNKILYAFHVDYNNFTGSLHEILLEQCNNVEGLIVSFRDNKISGGLTEEMSTKCSAIRALDLAGNRITGVMPGNIGLLSALVKMDISRNLLEGQIPSSFKELKSLKFLSLAENNLSGTIPSCLGKLRSLEVLDLSSNSLSGKIPRNLVTLTYLTSLLLNNNKLSGNIPDIAPSASLSIFNISFNNLSGPLPLNMHSLACDSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIASITSASAIVAVLLALIILYIYTRKCASRQSRRSIRRREVTVFVDIGAPLTYETVVRATGSFNASNCIGSGGFGATYKAEIAPGVLVAIKRLAIGRFQGIQQFQAEVKTLGRCRHPNLVTLIGYHLSDSEMFLIYNFLPGGNLERFIQERAKRPIDWRMLHKIALDIARALGFLHDSCVPRILHRDVKPSNIFT

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Gene Transcript Chromosome Start End Strand Source
OsPr106_03g0034880 OsPr106_03g0034880.02 Chr03 33665377 33670460 - IsoSeq
CDS seq

agtcgtcgtctcctcttctcttctCttcttcttctcctccacctcgtcgtcgtcgcctctccacctaccggaagccgcgccgcctccgccgcgtcgttcttcgccagggccaggtcgtctccgtcgtcggcgcactcggctggccggagatggtggcggctcgccggagcgcggcctcctcctccttcttcctcctcctgctggtgctcgccgtccgcgtccgcgcctcttccgaccgtgtccaagaacgggacagatcggcgctcctcgagctctggggcgccgccgggctgctggggcggtggccgacgggctccgccgtcgctgaccactgctcctggcccg

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Protein seq

SRRLLFSSLLLLLHLVVVASPPTGSRAASAASFFARARSSPSSAHSAGRRWWRLAGARPPPPSSSSCWCSPSASAPLPTVSKNGTDRRSSSSGAPPGCWGGGRRAPPSLTTAPGP

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 10.886538 23.306843 19.197334

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0756200 RBH 3.578130 2.688124 3.647277
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g54900 RBH 2.413106 1.801584 0.925015
Nipponbare | IRGSP 1.0 | RAP-db Os03g0756200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0035300 RBH 0.656333 17.294424 5.283308
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0034970 RBH 0.553310 3.062262 4.145408
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0035060 RBH 2.272662 19.196396 11.673905
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0035360 RBH 0.338096 0.513159 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0001010 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0534000 RBH 10.255084 26.9095485 25.065626
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0034660 RBH 0.626156 1.155777 1.771245
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0533200 RBH 13.6693645 30.8425465 19.3552325
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0035140 RBH 0.655030 0.436026 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0035170 RBH 0.971982 17.311008 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0034830 RBH 11.270854 31.043932 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0012530 RBH 1.174561 0.0 0.826419
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0034860 RBH 0.621282 14.251193 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G034650 RBH 0.694923 6.877423 3.501899
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0034490 RBH 2.416737 45.775059 8.025199
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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