Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g54900 | OGI:03087640 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:31207084-31212471 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTGGGAAAAAAAGGCACAAGATTGATATAATTTACTACTAATATATACTCCCTCCGTCCCATAATATAAGGGATTTTAAGTTTTTCTTGTACTGTTTGACCACTCGTCTTATTGATTTTTTTTTTTTGAAATTATCATTTATTTTTTTAACTTACTTTATTATCCAAAGTACTTTAAGCACAATTTTTTATTTTTTATATTTGCACAAATGTTTTAAATAAGACGAGCGGTCAAACAATGAAAAAAAAACTCAAAATCCCTTATATATTATTGGATCGAAGGAGTACTCCGTATATGGTAGTACAGAAATGGGCAAGAAAGGACGAGCACCCACTGGACGCTGTTATGAACATCTTTCAAGTTTCAACAAGTGAACACTCCAAGCTTGCTAAATCATGATCTACCAAAAGCGAAGGCTTCTCATCAACAATCGTCCAGTTATCCATGAGTCGCCGACTTGCGATATTAAGGCGTCCCATAACATAACACAAAGATTGGCCATCCCATAACACCATCAAAGGTTGCTACTGCTGTGGGGGCGTGCTTAGCCTGTAGTACTGCTCGAGTACAGTGGGCTAACATAAAGATCCTCCATTCAGGTCAGCGGCCAAATCTTCCATGGATTGCCAGCATGCCAGAATTCAAGGATTGCAGCAAGGAATTCTGGAGATGGATTGGCCTGCAGAAATTTCTTGTAAATTTCCAACAAGAAATTTCATCGTCCCACCGCATCATGACATTCGATTTCCAACGAAGAGAACCAAGCTTAGCAGTCCACGAGGCGTACAAACCTATCATCTGTAAGCTTGACTACGTTATGCCCGCATGCCTTGTACTGCATGGATGAACAAGAAAAAGAAGCGCCCACATGTTAGGCAACCATACATATGATCAAACCAGGTAAAAGACTCAATCAGAGACTAACATCTCACCCTCTCAGAAAACAAGGTACTACGCTTGTAGGACATGCTAGGCACAGCCAGACTCCCTCAGACTTCTCGTTCCGCCGAGTAGCATTACTTAGTTCCGATCTATCATAGTCACATGGTAACAAGGGTTCAACTGCCAAGCATCCTACTTGCTCAGCAACAAGGTATCGATTTACTGGCTCGTGGCCAGTTTGTCCATTAATTTGCTTGAAACATCATTGGCAGTTGTGACCAACAGAATCCTCCACAGCCTATATATGAGAAATCAATGACTTCATAAATGTGCATTCATATATCATACAGAAAAAACTGAACCCTACTCTAATTGATGAAATAGTGCACCATCAAATTGGACATGTAATGATATAATTTACATAACATCATACAAGCAGAAATCAGTTATGGTCATCTACAAAAAGGAAAATGAACTTACTCTGGTAGCAAATCATCTGATCAAGATCACCAACTTCATCCCTCTGATGTTCCATTGCTTCCTGCAGATAAAATTACATCAATAATATATCCAAGAATAATGCACAATTTCATAATAAATGGCCATAAAATGAATCAGCAGTGATTTGAAGAAAGAACAAGCACATGTTTTAACATATCAACCTCACATGAGGGAACAAGCACATGTTTCTGCTACCCACTAAGCTTCTTGGAGTATCGATAAGTCAATATTGGTTGACGAAAGATACAGATGACTGAAACTCGTTGGTGATCCAGGCTTCCACAGAAATTTCATGTCTTCATAATGCACAAAATAATTATACCGGAAAGCTATCGTACAGTTTTACAGAATTGTAGGTATAGTATAAGTTGACAGGACAATTTAATTAGAGTAGGAACCAGATATATTAAAAATATGCTCTCTAAAATGAACACGGATATCACATGGGGACACTTGTGTTGAACCTATGTTTTCATGATTCTTAAACACAATCACATGCGGAAAAAAAATGGTTACACTACAAATGTACCAATCAAAGTTTGGTAAAAAAAAGTGCAGCAAAATTAGCAGATATGGAAAGTTGGCTCATTGTACCTATATCAGTTTGTAAACATCGGATCAACCTTGAATTGCTATTCCTAGTAAGAAGGCGGTCTGAGTTCCTTTAGTCGTCGAACAACTTGCTTCATTGTGGGCCTGGATGAAAGAGAGTCGACGGTACACTTGATACCGAGGTGAAGAATCTCAACTAAGTCATCATGTGGGGCCACATCCCACAGACCTTCTATGAAGAACTCACGGGCTCGACCCTTCTGCAGAAGCATGCAAGCCCAGGCAACAATGTTGAAGCCATTTCCATATGGAGAAAAAGAAGGGTCCAGTGCTTTCTTGTCTGAAATAAGCTCAAGAAGTACAACTCCATAGCTGTACACATCTGCCTTATCAGAAACACGACATGTCATGGCATACTCTGGAGCAACATATCCAAAAGTACCTGCTACACCAGTTGTTGCGTGTGTTTCTGAATTCCCGAGTAGTCTTGCTAATCCAAAATCAGAAAGGTATGCATTGTATTCATTATCAAGTAAAATGTTGCTTGGTTTCACGTCTCGGTGCAGAATGCGTGGGACACAGCTATCATGAAGGAATCCAAGTGCACGTGCAATATCTAGAGCAATTTTGTGAAGCATTCTCCAGTCAATAGGTCTCTTAGCCCTTTCTTGTATAAATCTTTCCAAATTACCACCAGGAAGAAAATTATATATAAGAAACATCTCTGAATCACTGAGATGGTATCCTATGAGTGTCACAAGATTGGGATGGCGGCACCTCCCAAGAGTTTTTACCTCTGCTTGGAATTGCTGAATACCTTGGAACCTTCCAATCGCAAGCCTCTTTATCGCCACCAGAACTCCAGGTGCAATCTCAGCTTTGTATGTTGCTCCAAAGCCACCACTTCCAATACAATTGCTTGCATTAAAACTCCCCGTAGCACGTACAACAGTCTCATACGTCAATGGAGCACCAATATCCACAAAAACAGTCACTTCCCTTCTCCTGATTGAACGTCTTGACTGTCTTGATGCACATTTCCGTGTGTAAATATATAGGATAATCAGAGCCAAGAGAACTGCAACAATAGCTGATGCTGATGTAATTGAGGCAATCTCTATTTTGCTGAAGCCGCCACCACTATCAACAGTTGCACTATCTGATGGTGGAACATCTCCTTCTGCGAGTGATCGGGCCTTCATTACTGTATTTGCAAGTGTAGACAACCCACAAGGCTGGAGGGATGGATTTCCCTGAATACTGTTGCATGCCAATGAGTGCATATTCAAAGGCAATGGGCCAGACAAGTTATTGAATGAAATGTTAAAAATGGATAGTGATGCTGATGGGGCAATATCAGGAATGTTTCCGGAAAGCTTATTATTGTTCAGCAAAAGTGAAGTAAGATATGTCAGTGTCACAAGATTCCTAGGGATCTTTCCAGATAGGGAGTTAGACGAGAGATCCAAAACCTCCAGTGATCTCAACTTACCCAAACAGGATGGTATGGTGCCACTGAGATTATTCTCAGCTAATGACAGAAATTTCAAGCTCTTAAGCTCTTTGAAACTGGAAGGAATTTGACCCTCAAGCAAATTCCTACTGATGTCCATCTTGACAAGAGCACTCAACAAACCAATGTTACCAGGCATCACTCCTGTTATTCGATTGCCAGCAAGATCCAATGCTCTGATAGCACTGCATTTTGTACTCATTTCTTCTGTGAGCCCACCAGATATCTTGTTGTCCCGGAAACTGACAATCAACCCCTCCACATTATTACACTGTGCCAGCAAAATTTCATGCAAAGATCCTGTGAAGTTATTGTAATCAACATGAAAAGCATACAATATCTTGTTCCCAAATCGGTCTGCACTAAATGGCAATGATGTAAGGTGGCCTCCAAGATTGTTATTTGCAAAATTATGGTATACAACAGAACAATTTCCTGATTTGCAATACCCCGATGATGGCTGTGCTAGAGCTTTGGACATGAAGAATGACGGATAACGAGATGGCATGTCATCCAAAAGCTGGGGTGTGCAACCTTTGTTAGCACATGCTGGAATTGTGCCGGATAGTTCATTTCTGCTGACATCAAAAACAGCAATACAATGCGGACAAAGACCGTTATCAATAGAACCGGACAATTTATTCGAGCTGAGGTTGAGAAACTTGAGGTTACTGCACTGCCCTAGCTCCCTTGGAATCACTCCAGAGAGTAAGTTCTCCGCAAGGTTAACCATTTCCAAACTATGACACCTTCCCCAATTGCTCGGAATGTTCCCTTCAAAACCTGCCCTTGGCGCCCATAGCATCCGAAGCTTTGGCAAAGCTGTCACACTTTCCGGAATTCCTCCTATAAACATATTGAACTCAGATAAATTCACAGCATCAAACTGGCTCGTCAATACGAGTACCGACAAATCCATGCAATTCCCTAGTTCCATTGGAACCGGACCGTTCAATCGGTTACTCGATATGTCCAAAACCTGCAACCTCCTCAACCTTCCAATCTCTGGTGGAATTGAACCTTCCAGCAAATTGGAGAACAGCTGCAGGGAGCGGAGCTCCCGACAATCCCCCAATTCTGAGGGAATTCTTCCGGTAAGAAGGTTCCGGGACAAGTCAAGCAGCTTCAACTTGGGCAAGCTGCCAAGAACACCCGGCACCGAGCCGGTGAGGCGGTTGCCGGAAAGGTTCAACCTCATCAAGCTCTTGCAGTCCGAGAGAGTGCCCTGAATCTCACCATGCAGACGGTTGGAGGCGAGGTCAAGCACCCTCATCCGCGGCGGGAAGGCGAGAGGAAGCGCGCCATGGAGGGAGTTCCCCGCGAGGTTGACCACCTCGAGCTTCTCCAGCCTCCAGATCTCCGCGGGGATCTCGCCGCGAAGGCCGCGCGAGGGTAAGGAGAGCTCCCTCAGCTCGGTGAGGAGCCCCACCGCCGGGGAAAGCTCGCCGGCGAGCTCCGAGCTCCCCGAGGCAGGGGGCGCGGCGACGGCGACGGCGACGACCCGGCGACTCGCATCGCAGGTCACCCCGGGCCAGGAGCAGTGGTCAGCGACGGCGGAGCCCGTCGGCCACCGCCCCAGCAGCCCGGCGGCGCCCCGGAGCTCGAGGAGCGCCGATCTGTCCCGTTCTTGGACACGGTCGGAAGAGGCGCGGACGCGGACGGCGAGCACCAGCAGGAGGAGGAAGAAGGAGGAGGAGGCCGCGCTCCGGCGAGCCGCCACCATCTCCGGCCAGCCGAGTGCGCCGACGACGGAGACGACCTGGCCCTGGCGAAGAACGACGCGGCGGAGGCGGCGCGGCTTCCGGTAGGTGGAGAGGCGACGACGACGAGGTGGAGGAGAAGAAGAGGAGAAGAGAAGAGGAGACGACGACTCACATGGGGAGGAGGAGAAGGACTAGAAAGTAATTAGCGGCTTTCCCGAGGGGGAGACACGTAATCT
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| CDS seq | ATGGTGGCGGCTCGCCGGAGCGCGGCCTCCTCCTCCTTCTTCCTCCTCCTGCTGGTGCTCGCCGTCCGCGTCCGCGCCTCTTCCGACCGTGTCCAAGAACGGGACAGATCGGCGCTCCTCGAGCTCCGGGGCGCCGCCGGGCTGCTGGGGCGGTGGCCGACGGGCTCCGCCGTCGCTGACCACTGCTCCTGGCCCGGGGTGACCTGCGATGCGAGTCGCCGGGTCGTCGCCGTCGCCGTCGCCGCGCCCCCTGCCTCGGGGAGCTCGGAGCTCGCCGGCGAGCTTTCCCCGGCGGTGGGGCTCCTCACCGAGCTGAGGGAGCTCTCCTTACCCTCGCGCGGCCTTCGCGGCGAGATCCCCGCGGAGATCTGGAGGCTGGAGAAGCTCGAGGTGGTCAACCTCGCGGGGAACTCCCTCCATGGCGCGCTTCCTCTCGCCTTCCCGCCGCGGATGAGGGTGCTTGACCTCGCCTCCAACCGTCTGCATGGTGAGATTCAGGGCACTCTCTCGGACTGCAAGAGCTTGATGAGGTTGAACCTTTCCGGCAACCGCCTCACCGGCTCGGTGCCGGGTGTTCTTGGCAGCTTGCCCAAGTTGAAGCTGCTTGACTTGTCCCGGAACCTTCTTACCGGAAGAATTCCCTCAGAATTGGGGGATTGTCGGGAGCTCCGCTCCCTGCAGCTGTTCTCCAATTTGCTGGAAGGTTCAATTCCACCAGAGATTGGAAGGTTGAGGAGGTTGCAGGTTTTGGACATATCGAGTAACCGATTGAACGGTCCGGTTCCAATGGAACTAGGGAATTGCATGGATTTGTCGGTACTCGTATTGACGAGCCAGTTTGATGCTGTGAATTTATCTGAGTTCAATATGTTTATAGGAGGAATTCCGGAAAGTGTGACAGCTTTGCCAAAGCTTCGGATGCTATGGGCGCCAAGGGCAGGTTTTGAAGGGAACATTCCGAGCAATTGGGGAAGGTGTCATAGTTTGGAAATGGTTAACCTTGCGGAGAACTTACTCTCTGGAGTGATTCCAAGGGAGCTAGGGCAGTGCAGTAACCTCAAGTTTCTCAACCTCAGCTCGAATAAATTGTCCGGTTCTATTGATAACGGTCTTTGTCCGCATTGTATTGCTGTTTTTGATGTCAGCAGAAATGAACTATCCGGCACAATTCCAGCATGTGCTAACAAAGGTTGCACACCCCAGCTTTTGGATGACATGCCATCTCGTTATCCGTCATTCTTCATGTCCAAAGCTCTAGCACAGCCATCATCGGGGTATTGCAAATCAGGAAATTGTTCTGTTGTATACCATAATTTTGCAAATAACAATCTTGGAGGCCACCTTACATCATTGCCATTTAGTGCAGACCGATTTGGGAACAAGATATTGTATGCTTTTCATGTTGATTACAATAACTTCACAGGATCTTTGCATGAAATTTTGCTGGCACAGTGTAATAATGTGGAGGGGTTGATTGTCAGTTTCCGGGACAACAAGATATCTGGTGGGCTCACAGAAGAAATGAGTACAAAATGCAGTGCTATCAGAGCATTGGATCTTGCTGGCAATCGAATAACAGGAGTGATGCCTGGTAACATTGGTTTGTTGAGTGCTCTTGTCAAGATGGACATCAGTAGGAATTTGCTTGAGGGTCAAATTCCTTCCAGTTTCAAAGAGCTTAAGAGCTTGAAATTTCTGTCATTAGCTGAGAATAATCTCAGTGGCACCATACCATCCTGTTTGGGTAAGTTGAGATCACTGGAGGTTTTGGATCTCTCGTCTAACTCCCTATCTGGAAAGATCCCTAGGAATCTTGTGACACTGACATATCTTACTTCACTTTTGCTGAACAATAATAAGCTTTCCGGAAACATTCCTGATATTGCCCCATCAGCATCACTATCCATTTTTAACATTTCATTCAATAACTTGTCTGGCCCATTGCCTTTGAATATGCACTCATTGGCATGCAACAGTATTCAGGGAAATCCATCCCTCCAGCCTTGTGGGTTGTCTACACTTGCAAATACAGTAATGAAGGCCCGATCACTCGCAGAAGGAGATGTTCCACCATCAGATAGTGCAACTGTTGATAGTGGTGGCGGCTTCAGCAAAATAGAGATTGCCTCAATTACATCAGCATCAGCTATTGTTGCAGTTCTCTTGGCTCTGATTATCCTATATATTTACACACGGAAATGTGCATCAAGACAGTCAAGACGTTCAATCAGGAGAAGGGAAGTGACTGTTTTTGTGGATATTGGTGCTCCATTGACGTATGAGACTGTTGTACGTGCTACGGGGAGTTTTAATGCAAGCAATTGTATTGGAAGTGGTGGCTTTGGAGCAACATACAAAGCTGAGATTGCACCTGGAGTTCTGGTGGCGATAAAGAGGCTTGCGATTGGAAGGTTCCAAGGTATTCAGCAATTCCAAGCAGAGGTAAAAACTCTTGGGAGGTGCCGCCATCCCAATCTTGTGACACTCATAGGATACCATCTCAGTGATTCAGAGATGTTTCTTATATATAATTTTCTTCCTGGTGGTAATTTGGAAAGATTTATACAAGAAAGGGCTAAGAGACCTATTGACTGGAGAATGCTTCACAAAATTGCTCTAGATATTGCACGTGCACTTGGATTCCTTCATGATAGCTGTGTCCCACGCATTCTGCACCGAGACGTGAAACCAAGCAACATTTTACTTGATAATGAATACAATGCATACCTTTCTGATTTTGGATTAGCAAGACTACTCGGGAATTCAGAAACACACGCAACAACTGGTGTAGCAGGTACTTTTGGATATGTTGCTCCAGAGTATGCCATGACATGTCGTGTTTCTGATAAGGCAGATGTGTACAGCTATGGAGTTGTACTTCTTGAGCTTATTTCAGACAAGAAAGCACTGGACCCTTCTTTTTCTCCATATGGAAATGGCTTCAACATTGTTGCCTGGGCTTGCATGCTTCTGCAGAAGGGTCGAGCCCGTGAGTTCTTCATAGAAGGTCTGTGGGATGTGGCCCCACATGATGACTTAGTTGAGATTCTTCACCTCGGTATCAAGTGTACCGTCGACTCTCTTTCATCCAGGCCCACAATGAAGCAAGTTGTTCGACGACTAAAGGAACTCAGACCGCCTTCTTACTAG
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| Protein seq | MVAARRSAASSSFFLLLLVLAVRVRASSDRVQERDRSALLELRGAAGLLGRWPTGSAVADHCSWPGVTCDASRRVVAVAVAAPPASGSSELAGELSPAVGLLTELRELSLPSRGLRGEIPAEIWRLEKLEVVNLAGNSLHGALPLAFPPRMRVLDLASNRLHGEIQGTLSDCKSLMRLNLSGNRLTGSVPGVLGSLPKLKLLDLSRNLLTGRIPSELGDCRELRSLQLFSNLLEGSIPPEIGRLRRLQVLDISSNRLNGPVPMELGNCMDLSVLVLTSQFDAVNLSEFNMFIGGIPESVTALPKLRMLWAPRAGFEGNIPSNWGRCHSLEMVNLAENLLSGVIPRELGQCSNLKFLNLSSNKLSGSIDNGLCPHCIAVFDVSRNELSGTIPACANKGCTPQLLDDMPSRYPSFFMSKALAQPSSGYCKSGNCSVVYHNFANNNLGGHLTSLPFSADRFGNKILYAFHVDYNNFTGSLHEILLAQCNNVEGLIVSFRDNKISGGLTEEMSTKCSAIRALDLAGNRITGVMPGNIGLLSALVKMDISRNLLEGQIPSSFKELKSLKFLSLAENNLSGTIPSCLGKLRSLEVLDLSSNSLSGKIPRNLVTLTYLTSLLLNNNKLSGNIPDIAPSASLSIFNISFNNLSGPLPLNMHSLACNSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIASITSASAIVAVLLALIILYIYTRKCASRQSRRSIRRREVTVFVDIGAPLTYETVVRATGSFNASNCIGSGGFGATYKAEIAPGVLVAIKRLAIGRFQGIQQFQAEVKTLGRCRHPNLVTLIGYHLSDSEMFLIYNFLPGGNLERFIQERAKRPIDWRMLHKIALDIARALGFLHDSCVPRILHRDVKPSNILLDNEYNAYLSDFGLARLLGNSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSPYGNGFNIVAWACMLLQKGRAREFFIEGLWDVAPHDDLVEILHLGIKCTVDSLSSRPTMKQVVRRLKELRPPSY |
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| Function | LRR receptor-like serine/threonine-protein kinase RPK2 [UniProtKB/Swiss-Prot:Q9S7I6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g54900 | LOC_Os03g54900.1 | Chr03 | 31207084 | 31212471 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGCGGCTCGCCGGAGCGCGGCCTCCTCCTCCTTCTTCCTCCTCCTGCTGGTGCTCGCCGTCCGCGTCCGCGCCTCTTCCGACCGTGTCCAAGAACGGGACAGATCGGCGCTCCTCGAGCTCCGGGGCGCCGCCGGGCTGCTGGGGCGGTGGCCGACGGGCTCCGCCGTCGCTGACCACTGCTCCTGGCCCGGGGTGACCTGCGATGCGAGTCGCCGGGTCGTCGCCGTCGCCGTCGCCGCGCCCCCTGCCTCGGGGAGCTCGGAGCTCGCCGGCGAGCTTTCCCCGGCGGTGGGGCTCCTCACCGAGCTGAGGGAGCTCTCCTTACCCTCGCGCGGCCTTCGCGGCGAGATCCCCGCGGAGATCTGGAGGCTGGAGAAGCTCGAGGTGGTCAACCTCGCGGGGAACTCCCTCCATGGCGCGCTTCCTCTCGCCTTCCCGCCGCGGATGAGGGTGCTTGACCTCGCCTCCAACCGTCTGCATGGTGAGATTCAGGGCACTCTCTCGGACTGCAAGAGCTTGATGAGGTTGAACCTTTCCGGCAACCGCCTCACCGGCTCGGTGCCGGGTGTTCTTGGCAGCTTGCCCAAGTTGAAGCTGCTTGACTTGTCCCGGAACCTTCTTACCGGAAGAATTCCCTCAGAATTGGGGGATTGTCGGGAGCTCCGCTCCCTGCAGCTGTTCTCCAATTTGCTGGAAGGTTCAATTCCACCAGAGATTGGAAGGTTGAGGAGGTTGCAGGTTTTGGACATATCGAGTAACCGATTGAACGGTCCGGTTCCAATGGAACTAGGGAATTGCATGGATTTGTCGGTACTCGTATTGACGAGCCAGTTTGATGCTGTGAATTTATCTGAGTTCAATATGTTTATAGGAGGAATTCCGGAAAGTGTGACAGCTTTGCCAAAGCTTCGGATGCTATGGGCGCCAAGGGCAGGTTTTGAAGGGAACATTCCGAGCAATTGGGGAAGGTGTCATAGTTTGGAAATGGTTAACCTTGCGGAGAACTTACTCTCTGGAGTGATTCCAAGGGAGCTAGGGCAGTGCAGTAACCTCAAGTTTCTCAACCTCAGCTCGAATAAATTGTCCGGTTCTATTGATAACGGTCTTTGTCCGCATTGTATTGCTGTTTTTGATGTCAGCAGAAATGAACTATCCGGCACAATTCCAGCATGTGCTAACAAAGGTTGCACACCCCAGCTTTTGGATGACATGCCATCTCGTTATCCGTCATTCTTCATGTCCAAAGCTCTAGCACAGCCATCATCGGGGTATTGCAAATCAGGAAATTGTTCTGTTGTATACCATAATTTTGCAAATAACAATCTTGGAGGCCACCTTACATCATTGCCATTTAGTGCAGACCGATTTGGGAACAAGATATTGTATGCTTTTCATGTTGATTACAATAACTTCACAGGATCTTTGCATGAAATTTTGCTGGCACAGTGTAATAATGTGGAGGGGTTGATTGTCAGTTTCCGGGACAACAAGATATCTGGTGGGCTCACAGAAGAAATGAGTACAAAATGCAGTGCTATCAGAGCATTGGATCTTGCTGGCAATCGAATAACAGGAGTGATGCCTGGTAACATTGGTTTGTTGAGTGCTCTTGTCAAGATGGACATCAGTAGGAATTTGCTTGAGGGTCAAATTCCTTCCAGTTTCAAAGAGCTTAAGAGCTTGAAATTTCTGTCATTAGCTGAGAATAATCTCAGTGGCACCATACCATCCTGTTTGGGTAAGTTGAGATCACTGGAGGTTTTGGATCTCTCGTCTAACTCCCTATCTGGAAAGATCCCTAGGAATCTTGTGACACTGACATATCTTACTTCACTTTTGCTGAACAATAATAAGCTTTCCGGAAACATTCCTGATATTGCCCCATCAGCATCACTATCCATTTTTAACATTTCATTCAATAACTTGTCTGGCCCATTGCCTTTGAATATGCACTCATTGGCATGCAACAGTATTCAGGGAAATCCATCCCTCCAGCCTTGTGGGTTGTCTACACTTGCAAATACAGTAATGAAGGCCCGATCACTCGCAGAAGGAGATGTTCCACCATCAGATAGTGCAACTGTTGATAGTGGTGGCGGCTTCAGCAAAATAGAGATTGCCTCAATTACATCAGCATCAGCTATTGTTGCAGTTCTCTTGGCTCTGATTATCCTATATATTTACACACGGAAATGTGCATCAAGACAGTCAAGACGTTCAATCAGGAGAAGGGAAGTGACTGTTTTTGTGGATATTGGTGCTCCATTGACGTATGAGACTGTTGTACGTGCTACGGGGAGTTTTAATGCAAGCAATTGTATTGGAAGTGGTGGCTTTGGAGCAACATACAAAGCTGAGATTGCACCTGGAGTTCTGGTGGCGATAAAGAGGCTTGCGATTGGAAGGTTCCAAGGTATTCAGCAATTCCAAGCAGAGGTAAAAACTCTTGGGAGGTGCCGCCATCCCAATCTTGTGACACTCATAGGATACCATCTCAGTGATTCAGAGATGTTTCTTATATATAATTTTCTTCCTGGTGGTAATTTGGAAAGATTTATACAAGAAAGGGCTAAGAGACCTATTGACTGGAGAATGCTTCACAAAATTGCTCTAGATATTGCACGTGCACTTGGATTCCTTCATGATAGCTGTGTCCCACGCATTCTGCACCGAGACGTGAAACCAAGCAACATTTTACTTGATAATGAATACAATGCATACCTTTCTGATTTTGGATTAGCAAGACTACTCGGGAATTCAGAAACACACGCAACAACTGGTGTAGCAGGTACTTTTGGATATGTTGCTCCAGAGTATGCCATGACATGTCGTGTTTCTGATAAGGCAGATGTGTACAGCTATGGAGTTGTACTTCTTGAGCTTATTTCAGACAAGAAAGCACTGGACCCTTCTTTTTCTCCATATGGAAATGGCTTCAACATTGTTGCCTGGGCTTGCATGCTTCTGCAGAAGGGTCGAGCCCGTGAGTTCTTCATAGAAGGTCTGTGGGATGTGGCCCCACATGATGACTTAGTTGAGATTCTTCACCTCGGTATCAAGTGTACCGTCGACTCTCTTTCATCCAGGCCCACAATGAAGCAAGTTGTTCGACGACTAAAGGAACTCAGACCGCCTTCTTACTAG
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| Protein seq | MVAARRSAASSSFFLLLLVLAVRVRASSDRVQERDRSALLELRGAAGLLGRWPTGSAVADHCSWPGVTCDASRRVVAVAVAAPPASGSSELAGELSPAVGLLTELRELSLPSRGLRGEIPAEIWRLEKLEVVNLAGNSLHGALPLAFPPRMRVLDLASNRLHGEIQGTLSDCKSLMRLNLSGNRLTGSVPGVLGSLPKLKLLDLSRNLLTGRIPSELGDCRELRSLQLFSNLLEGSIPPEIGRLRRLQVLDISSNRLNGPVPMELGNCMDLSVLVLTSQFDAVNLSEFNMFIGGIPESVTALPKLRMLWAPRAGFEGNIPSNWGRCHSLEMVNLAENLLSGVIPRELGQCSNLKFLNLSSNKLSGSIDNGLCPHCIAVFDVSRNELSGTIPACANKGCTPQLLDDMPSRYPSFFMSKALAQPSSGYCKSGNCSVVYHNFANNNLGGHLTSLPFSADRFGNKILYAFHVDYNNFTGSLHEILLAQCNNVEGLIVSFRDNKISGGLTEEMSTKCSAIRALDLAGNRITGVMPGNIGLLSALVKMDISRNLLEGQIPSSFKELKSLKFLSLAENNLSGTIPSCLGKLRSLEVLDLSSNSLSGKIPRNLVTLTYLTSLLLNNNKLSGNIPDIAPSASLSIFNISFNNLSGPLPLNMHSLACNSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIASITSASAIVAVLLALIILYIYTRKCASRQSRRSIRRREVTVFVDIGAPLTYETVVRATGSFNASNCIGSGGFGATYKAEIAPGVLVAIKRLAIGRFQGIQQFQAEVKTLGRCRHPNLVTLIGYHLSDSEMFLIYNFLPGGNLERFIQERAKRPIDWRMLHKIALDIARALGFLHDSCVPRILHRDVKPSNILLDNEYNAYLSDFGLARLLGNSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSPYGNGFNIVAWACMLLQKGRAREFFIEGLWDVAPHDDLVEILHLGIKCTVDSLSSRPTMKQVVRRLKELRPPSY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g54900 | LOC_Os03g54900.2 | Chr03 | 31207084 | 31212413 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGCGGCTCGCCGGAGCGCGGCCTCCTCCTCCTTCTTCCTCCTCCTGCTGGTGCTCGCCGTCCGCGTCCGCGCCTCTTCCGACCGTGTCCAAGAACGGGACAGATCGGCGCTCCTCGAGCTCCGGGGCGCCGCCGGGCTGCTGGGGCGGTGGCCGACGGGCTCCGCCGTCGCTGACCACTGCTCCTGGCCCGGGGTGACCTGCGATGCGAGTCGCCGGGTCGTCGCCGTCGCCGTCGCCGCGCCCCCTGCCTCGGGGAGCTCGGAGCTCGCCGGCGAGCTTTCCCCGGCGGTGGGGCTCCTCACCGAGCTGAGGGAGCTCTCCTTACCCTCGCGCGGCCTTCGCGGCGAGATCCCCGCGGAGATCTGGAGGCTGGAGAAGCTCGAGGTGGTCAACCTCGCGGGGAACTCCCTCCATGGCGCGCTTCCTCTCGCCTTCCCGCCGCGGATGAGGGTGCTTGACCTCGCCTCCAACCGTCTGCATGGTGAGATTCAGGGCACTCTCTCGGACTGCAAGAGCTTGATGAGGTTGAACCTTTCCGGCAACCGCCTCACCGGCTCGGTGCCGGGTGTTCTTGGCAGCTTGCCCAAGTTGAAGCTGCTTGACTTGTCCCGGAACCTTCTTACCGGAAGAATTCCCTCAGAATTGGGGGATTGTCGGGAGCTCCGCTCCCTGCAGCTGTTCTCCAATTTGCTGGAAGGTTCAATTCCACCAGAGATTGGAAGGTTGAGGAGGTTGCAGGTTTTGGACATATCGAGTAACCGATTGAACGGTCCGGTTCCAATGGAACTAGGGAATTGCATGGATTTGTCGGTACTCGTATTGACGAGCCAGTTTGATGCTGTGAATTTATCTGAGTTCAATATGTTTATAGGAGGAATTCCGGAAAGTGTGACAGCTTTGCCAAAGCTTCGGATGCTATGGGCGCCAAGGGCAGGTTTTGAAGGGAACATTCCGAGCAATTGGGGAAGGTGTCATAGTTTGGAAATGGTTAACCTTGCGGAGAACTTACTCTCTGGAGTGATTCCAAGGGAGCTAGGGCAGTGCAGTAACCTCAAGTTTCTCAACCTCAGCTCGAATAAATTGTCCGGTTCTATTGATAACGGTCTTTGTCCGCATTGTATTGCTGTTTTTGATGTCAGCAGAAATGAACTATCCGGCACAATTCCAGCATGTGCTAACAAAGGTTGCACACCCCAGCTTTTGGATGACATGCCATCTCGTTATCCGTCATTCTTCATGTCCAAAGCTCTAGCACAGCCATCATCGGGGTATTGCAAATCAGGAAATTGTTCTGTTGTATACCATAATTTTGCAAATAACAATCTTGGAGGCCACCTTACATCATTGCCATTTAGTGCAGACCGATTTGGGAACAAGATATTGTATGCTTTTCATGTTGATTACAATAACTTCACAGGATCTTTGCATGAAATTTTGCTGGCACAGTGTAATAATGTGGAGGGGTTGATTGTCAGTTTCCGGGACAACAAGATATCTGGTGGGCTCACAGAAGAAATGAGTACAAAATGCAGTGCTATCAGAGCATTGGATCTTGCTGGCAATCGAATAACAGGAGTGATGCCTGGTAACATTGGTTTGTTGAGTGCTCTTGTCAAGATGGACATCAGTAGGAATTTGCTTGAGGGTCAAATTCCTTCCAGTTTCAAAGAGCTTAAGAGCTTGAAATTTCTGTCATTAGCTGAGAATAATCTCAGTGGCACCATACCATCCTGTTTGGGTAAGTTGAGATCACTGGAGGTTTTGGATCTCTCGTCTAACTCCCTATCTGGAAAGATCCCTAGGAATCTTGTGACACTGACATATCTTACTTCACTTTTGCTGAACAATAATAAGCTTTCCGGAAACATTCCTGATATTGCCCCATCAGCATCACTATCCATTTTTAACATTTCATTCAATAACTTGTCTGGCCCATTGCCTTTGAATATGCACTCATTGGCATGCAACAGTATTCAGGGAAATCCATCCCTCCAGCCTTGTGGGTTGTCTACACTTGCAAATACAGTAATGAAGGCCCGATCACTCGCAGAAGGAGATGTTCCACCATCAGATAGTGCAACTGTTGATAGTGGTGGCGGCTTCAGCAAAATAGAGATTGCCTCAATTACATCAGCATCAGCTATTGTTGCAGTTCTCTTGGCTCTGATTATCCTATATATTTACACACGGAAATGTGCATCAAGACAGTCAAGACGTTCAATCAGGAGAAGGGAAGTGACTGTTTTTGTGGATATTGGTGCTCCATTGACGTATGAGACTGTTGTACGTGCTACGGGGAGTTTTAATGCAAGCAATTGTATTGGAAGTGGTGGCTTTGGAGCAACATACAAAGCTGAGATTGCACCTGGAGTTCTGGTGGCGATAAAGAGGCTTGCGATTGGAAGGTTCCAAGGTATTCAGCAATTCCAAGCAGAGGTAAAAACTCTTGGGAGGTGCCGCCATCCCAATCTTGTGACACTCATAGGATACCATCTCAGTGATTCAGAGATGTTTCTTATATATAATTTTCTTCCTGGTGGTAATTTGGAAAGATTTATACAAGAAAGGGCTAAGAGACCTATTGACTGGAGAATGCTTCACAAAATTGCTCTAGATATTGCACGTGCACTTGGATTCCTTCATGATAGCTGTGTCCCACGCATTCTGCACCGAGACGTGAAACCAAGCAACATTTTACTTGATAATGAATACAATGCATACCTTTCTGATTTTGGATTAGCAAGACTACTCGGGAATTCAGAAACACACGCAACAACTGGTGTAGCAGGTACTTTTGGATATGTTGCTCCAGAGTATGCCATGACATGTCGTGTTTCTGATAAGGCAGATGTGTACAGCTATGGAGTTGTACTTCTTGAGCTTATTTCAGACAAGAAAGCACTGGACCCTTCTTTTTCTCCATATGGAAATGGCTTCAACATTGTTGCCTGGGCTTGCATGCTTCTGCAGAAGGGTCGAGCCCGTGAGTTCTTCATAGAAGGTCTGTGGGATGTGGCCCCACATGATGACTTAGTTGAGATTCTTCACCTCGGTATCAAGTGTACCGTCGACTCTCTTTCATCCAGGCCCACAATGAAGCAAGTTGTTCGACGACTAAAGGAACTCAGACCGCCTTCTTACTAG
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| Protein seq | MVAARRSAASSSFFLLLLVLAVRVRASSDRVQERDRSALLELRGAAGLLGRWPTGSAVADHCSWPGVTCDASRRVVAVAVAAPPASGSSELAGELSPAVGLLTELRELSLPSRGLRGEIPAEIWRLEKLEVVNLAGNSLHGALPLAFPPRMRVLDLASNRLHGEIQGTLSDCKSLMRLNLSGNRLTGSVPGVLGSLPKLKLLDLSRNLLTGRIPSELGDCRELRSLQLFSNLLEGSIPPEIGRLRRLQVLDISSNRLNGPVPMELGNCMDLSVLVLTSQFDAVNLSEFNMFIGGIPESVTALPKLRMLWAPRAGFEGNIPSNWGRCHSLEMVNLAENLLSGVIPRELGQCSNLKFLNLSSNKLSGSIDNGLCPHCIAVFDVSRNELSGTIPACANKGCTPQLLDDMPSRYPSFFMSKALAQPSSGYCKSGNCSVVYHNFANNNLGGHLTSLPFSADRFGNKILYAFHVDYNNFTGSLHEILLAQCNNVEGLIVSFRDNKISGGLTEEMSTKCSAIRALDLAGNRITGVMPGNIGLLSALVKMDISRNLLEGQIPSSFKELKSLKFLSLAENNLSGTIPSCLGKLRSLEVLDLSSNSLSGKIPRNLVTLTYLTSLLLNNNKLSGNIPDIAPSASLSIFNISFNNLSGPLPLNMHSLACNSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIASITSASAIVAVLLALIILYIYTRKCASRQSRRSIRRREVTVFVDIGAPLTYETVVRATGSFNASNCIGSGGFGATYKAEIAPGVLVAIKRLAIGRFQGIQQFQAEVKTLGRCRHPNLVTLIGYHLSDSEMFLIYNFLPGGNLERFIQERAKRPIDWRMLHKIALDIARALGFLHDSCVPRILHRDVKPSNILLDNEYNAYLSDFGLARLLGNSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSPYGNGFNIVAWACMLLQKGRAREFFIEGLWDVAPHDDLVEILHLGIKCTVDSLSSRPTMKQVVRRLKELRPPSY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.413106 | 1.801584 | 0.925015 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0756200 | RBH | 3.578130 | 2.688124 | 3.647277 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0756200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035300 | RBH | 0.656333 | 17.294424 | 5.283308 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034970 | RBH | 0.553310 | 3.062262 | 4.145408 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035060 | RBH | 2.272662 | 19.196396 | 11.673905 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035360 | RBH | 0.338096 | 0.513159 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034880 | RBH | 10.886538 | 23.306843 | 19.197334 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0534000 | RBH | 10.255084 | 26.9095485 | 25.065626 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034660 | RBH | 0.626156 | 1.155777 | 1.771245 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0533200 | RBH | 13.6693645 | 30.8425465 | 19.3552325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035140 | RBH | 0.655030 | 0.436026 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035170 | RBH | 0.971982 | 17.311008 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034830 | RBH | 11.270854 | 31.043932 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0012530 | RBH | 1.174561 | 0.0 | 0.826419 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034860 | RBH | 0.621282 | 14.251193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034650 | RBH | 0.694923 | 6.877423 | 3.501899 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034490 | RBH | 2.416737 | 45.775059 | 8.025199 |
