Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsPr106_03g0027040 OGI:03070010 | 16/16 PR 106 | Os127742RS1 | Gramene(+IsoSeq) Chr03:26613422-26616448
Gene Symbol MIS2, OsCR4, CR4, OsMIS2
DNA seq

atggcgtccatcgccgtgtcctacggcgaggacggCcccgtgttctgcgggctcaactcggatggttctcacttggtcacctgcttcggcgcggatgcctccgttgtgtacggtgcccccagcaggatcccgttcgtaggggttactgcgggggatgggtttgcctgtggcctattgctcgacaccAatcagccttactgctggggGAgcaactcctatgtcaagattggtgtgccgcagccgatggtcgaGggagccatgtactcggagctcagtgcaggagacaaccacctttgtgccctacgaacatctgtcaaggggtttcacagcgtgaatggagatacatcggtgattgattgctggggatacaacatgaccgccacacataccgtcaccggagctgtatcggccatttcagctggttctgtgttcaattgcggcttatttgcacggaacaggacggttttctgctggggcgatgaatcggttagtggtgtcattgggctagctccgaggaatgtgcggttccagtctataggagcaggtggttaccatgtctgcGgggtgctggagaatgcgcaggtattctgctggggtaggagcttggagatgcagcagatgtcaacacccagttctactgatgatggtgatgtgaacatagttccgatggatgcaatggtctccgtggtcggtgggcggttccatgcttgtggcatcaggagtcttgatcaccaagtggcttgctGgggcttcacacttcagaacagtacacttgcaccaaaagggctcagagtttatgcaattgtggctggagattacttcacttgtggggtgccggccgagacatcgttgaagccaatgtgctGggggcatagtggcccattagcactaccaatggcggtatcccctgggaTttgtgtatctgattcatgcagccatggctactatgaatacgcaaaccatggtgaagttggcagtggtagcaagacatgtaaacctgcaaattctagactctgcttgccctgcagtgttggttgcccagatgactcatatgagtcatcaccttgcaatgccacagctgaccgtgtttgccagtttgattgctcaaagtgtgcctcagatgagtgcgtgtcattttgtttgtCccagaaacggaccaagaaccgcaagttcatggcttttcagctgcgtatttttgtggcagagattgcatttgccgtcatattggtgttcagtgtgaccgctattgcttgcctgtatgtccggtacaaacttcgacattgccagtgttcaaagaatgagttgaggctggcaaagaatacaacatattctttccggaaggacaacatgaagattcagcctgatgtagaggacttgaagatcaggagagctcaggaattctcatacgaggagttagagcaagcaacagggggcttctcagaGgattcacaagttggcaaaggcagcttttcatgtgtgttcaagggcattctgagggatggtacagttgttgccgtgaagcgtgcaattaaggcatcagatgtgaagaagagctcaaaagagttccataccgagcttgacctcctctccaggctcaaccatgcgcacttgctgaacctgcttggctattgtgaggatggcagcgagaggctcttggtttatgagttcatggctcatggatccctctatcagcatcttcatggcaaggatccgaacttgaagaAGagactgaattgggccaggcgggtcactattgctgtccaagctgctcgggggatcgagtacttgcatggctatgcttgcccaccagtaattcaccgagacatcaagtcctcaaacatactgatagatgaggatcacaatgcgcgtgtcgctgactttggtctatctatattgggcccagcagatagtggtaccccactatcagagctgcctgcagggacacttggctaccttgatcctgagtactaccgtctgcattacttgacaacaaaatctgatgtgtatagcttcggagttgttcttctagagatcctaagtggcaggaaagctattgacatgcagtttgaggaaggaaacattgttgaatgggcagtaccattgatcaaagctggagacatttctgcccttcttgatcctgtcttatctcctccctctgatcttgaggctctcaagaagatcgctgctgtggcatgcaaGTgtgtcagaatgcgagccaaagaccgcccttccatggataaggtaacaacagctctagagcgtgcccttgcactgctgatgggtagcccgtgcattgagcaacctattctgccaactgaggttgttcttgggagtagcaggatgcacaagaaggtatcgcagaggtcatctaaccattcgtgctccgagaatgatctcgttgacggggacgatcagcggattgagtacagagcaccatcttggataacatttccaagtgtgacttcatctcagaggaggaaatcctcggcatctgaagctgacatggatggacgaacaaccacagatggaaggaacgtcgggagcagcataggtgatggattgcggtcgctggaggaagaaatcagcccggcctcaccgcaggaaaacctgtacttgcagcacaacttctgatgaaatgtcaagaacagttgaaaattcaggcaactgtctgctgtttatggtcagcattgtgaattcagccaatgtgacctgccgttgctatattggaaattgcattgaaatgtttataaatccaatggtacctggccatctaaaagggagagagaactagctatagagagcactggaagaaattttagcagccggaggcatttctttgtagattattttaaatttttttggctctctttcctgctgttatttatatgtggatggtaacatttgatggatgctcatctgtagcttacagatctgtaccctaaacatcttttgcatgtctagtcttgctttttcctgcaaatttcaatgctgtatgccaatcaaaatgcaacttttaggtcccccatt

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CDS seq

atggcgtccatcgccgtgtcctacggcgaggacggCcccgtgttctgcgggctcaactcggatggttctcacttggtcacctgcttcggcgcggatgcctccgttgtgtacggtgcccccagcaggatcccgttcgtaggggttactgcgggggatgggtttgcctgtggcctattgctcgacaccAatcagccttactgctggggGAgcaactcctatgtcaagattggtgtgccgcagccgatggtcgaGggagccatgtactcggagctcagtgcaggagacaaccacctttgtgccctacgaacatctgtcaaggggtttcacagcgtgaatggagatacatcggtgattgattgctggggatacaacatgaccgccacacataccgtcaccggagctgtatcggccatttcagctggttctgtgttcaattgcggcttatttgcacggaacaggacggttttctgctggggcgatgaatcggttagtggtgtcattgggctagctccgaggaatgtgcggttccagtctataggagcaggtggttaccatgtctgcGgggtgctggagaatgcgcaggtattctgctggggtaggagcttggagatgcagcagatgtcaacacccagttctactgatgatggtgatgtgaacatagttccgatggatgcaatggtctccgtggtcggtgggcggttccatgcttgtggcatcaggagtcttgatcaccaagtggcttgctGgggcttcacacttcagaacagtacacttgcaccaaaagggctcagagtttatgcaattgtggctggagattacttcacttgtggggtgccggccgagacatcgttgaagccaatgtgctGggggcatagtggcccattagcactaccaatggcggtatcccctgggaTttgtgtatctgattcatgcagccatggctactatgaatacgcaaaccatggtgaagttggcagtggtagcaagacatgtaaacctgcaaattctagactctgcttgccctgcagtgttggttgcccagatgactcatatgagtcatcaccttgcaatgccacagctgaccgtgtttgccagtttgattgctcaaagtgtgcctcagatgagtgcgtgtcattttgtttgtCccagaaacggaccaagaaccgcaagttcatggcttttcagctgcgtatttttgtggcagagattgcatttgccgtcatattggtgttcagtgtgaccgctattgcttgcctgtatgtccggtacaaacttcgacattgccagtgttcaaagaatgagttgaggctggcaaagaatacaacatattctttccggaaggacaacatgaagattcagcctgatgtagaggacttgaagatcaggagagctcaggaattctcatacgaggagttagagcaagcaacagggggcttctcagaGgattcacaagttggcaaaggcagcttttcatgtgtgttcaagggcattctgagggatggtacagttgttgccgtgaagcgtgcaattaaggcatcagatgtgaagaagagctcaaaagagttccataccgagcttgacctcctctccaggctcaaccatgcgcacttgctgaacctgcttggctattgtgaggatggcagcgagaggctcttggtttatgagttcatggctcatggatccctctatcagcatcttcatggcaaggatccgaacttgaagaAGagactgaattgggccaggcgggtcactattgctgtccaagctgctcgggggatcgagtacttgcatggctatgcttgcccaccagtaattcaccgagacatcaagtcctcaaacatactgatagatgaggatcacaatgcgcgtgtcgctgactttggtctatctatattgggcccagcagatagtggtaccccactatcagagctgcctgcagggacacttggctaccttgatcctgagtactaccgtctgcattacttgacaacaaaatctgatgtgtatagcttcggagttgttcttctagagatcctaagtggcaggaaagctattgacatgcagtttgaggaaggaaacattgttgaatgggcagtaccattgatcaaagctggagacatttctgcccttcttgatcctgtcttatctcctccctctgatcttgaggctctcaagaagatcgctgctgtggcatgcaaGTgtgtcagaatgcgagccaaagaccgcccttccatggataaggtaacaacagctctagagcgtgcccttgcactgctgatgggtagcccgtgcattgagcaacctattctgccaactgaggttgttcttgggagtagcaggatgcacaagaaggtatcgcagaggtcatctaaccattcgtgctccgagaatgatctcgttgacggggacgatcagcggattgagtacagagcaccatcttggataacatttccaagtgtgacttcatctcagaggaggaaatcctcggcatctgaagctgacatggatggacgaacaaccacagatggaaggaacgtcgggagcagcataggtgatggattgcggtcgctggaggaagaaatcagcccggcctcaccgcaggaaaacctgtacttgcagcacaacttctga

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Protein seq

MASIAVSYGEDGPVFCGLNSDGSHLVTCFGADASVVYGAPSRIPFVGVTAGDGFACGLLLDTNQPYCWGSNSYVKIGVPQPMVEGAMYSELSAGDNHLCALRTSVKGFHSVNGDTSVIDCWGYNMTATHTVTGAVSAISAGSVFNCGLFARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAGGYHVCGVLENAQVFCWGRSLEMQQMSTPSSTDDGDVNIVPMDAMVSVVGGRFHACGIRSLDHQVACWGFTLQNSTLAPKGLRVYAIVAGDYFTCGVPAETSLKPMCWGHSGPLALPMAVSPGICVSDSCSHGYYEYANHGEVGSGSKTCKPANSRLCLPCSVGCPDDSYESSPCNATADRVCQFDCSKCASDECVSFCLSQKRTKNRKFMAFQLRIFVAEIAFAVILVFSVTAIACLYVRYKLRHCQCSKNELRLAKNTTYSFRKDNMKIQPDVEDLKIRRAQEFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHTELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGKDPNLKKRLNWARRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEDHNARVADFGLSILGPADSGTPLSELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVVLLEILSGRKAIDMQFEEGNIVEWAVPLIKAGDISALLDPVLSPPSDLEALKKIAAVACKCVRMRAKDRPSMDKVTTALERALALLMGSPCIEQPILPTEVVLGSSRMHKKVSQRSSNHSCSENDLVDGDDQRIEYRAPSWITFPSVTSSQRRKSSASEADMDGRTTTDGRNVGSSIGDGLRSLEEEISPASPQENLYLQHNF

Function Serine/threonine-protein kinase-like protein CR4 [UniProtKB/Swiss-Prot:Q75J39]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsPr106_03g0027040 OsPr106_03g0027040.01 Chr03 26613422 26616448 + NAM
CDS seq

atggcgtccatcgccgtgtcctacggcgaggacggCcccgtgttctgcgggctcaactcggatggttctcacttggtcacctgcttcggcgcggatgcctccgttgtgtacggtgcccccagcaggatcccgttcgtaggggttactgcgggggatgggtttgcctgtggcctattgctcgacaccAatcagccttactgctggggGAgcaactcctatgtcaagattggtgtgccgcagccgatggtcgaGggagccatgtactcggagctcagtgcaggagacaaccacctttgtgccctacgaacatctgtcaaggggtttcacagcgtgaatggagatacatcggtgattgattgctggggatacaacatgaccgccacacataccgtcaccggagctgtatcggccatttcagctggttctgtgttcaattgcggcttatttgcacggaacaggacggttttctgctggggcgatgaatcggttagtggtgtcattgggctagctccgaggaatgtgcggttccagtctataggagcaggtggttaccatgtctgcGgggtgctggagaatgcgcaggtattctgctggggtaggagcttggagatgcagcagatgtcaacacccagttctactgatgatggtgatgtgaacatagttccgatggatgcaatggtctccgtggtcggtgggcggttccatgcttgtggcatcaggagtcttgatcaccaagtggcttgctGgggcttcacacttcagaacagtacacttgcaccaaaagggctcagagtttatgcaattgtggctggagattacttcacttgtggggtgccggccgagacatcgttgaagccaatgtgctGggggcatagtggcccattagcactaccaatggcggtatcccctgggaTttgtgtatctgattcatgcagccatggctactatgaatacgcaaaccatggtgaagttggcagtggtagcaagacatgtaaacctgcaaattctagactctgcttgccctgcagtgttggttgcccagatgactcatatgagtcatcaccttgcaatgccacagctgaccgtgtttgccagtttgattgctcaaagtgtgcctcagatgagtgcgtgtcattttgtttgtCccagaaacggaccaagaaccgcaagttcatggcttttcagctgcgtatttttgtggcagagattgcatttgccgtcatattggtgttcagtgtgaccgctattgcttgcctgtatgtccggtacaaacttcgacattgccagtgttcaaagaatgagttgaggctggcaaagaatacaacatattctttccggaaggacaacatgaagattcagcctgatgtagaggacttgaagatcaggagagctcaggaattctcatacgaggagttagagcaagcaacagggggcttctcagaGgattcacaagttggcaaaggcagcttttcatgtgtgttcaagggcattctgagggatggtacagttgttgccgtgaagcgtgcaattaaggcatcagatgtgaagaagagctcaaaagagttccataccgagcttgacctcctctccaggctcaaccatgcgcacttgctgaacctgcttggctattgtgaggatggcagcgagaggctcttggtttatgagttcatggctcatggatccctctatcagcatcttcatggcaaggatccgaacttgaagaAGagactgaattgggccaggcgggtcactattgctgtccaagctgctcgggggatcgagtacttgcatggctatgcttgcccaccagtaattcaccgagacatcaagtcctcaaacatactgatagatgaggatcacaatgcgcgtgtcgctgactttggtctatctatattgggcccagcagatagtggtaccccactatcagagctgcctgcagggacacttggctaccttgatcctgagtactaccgtctgcattacttgacaacaaaatctgatgtgtatagcttcggagttgttcttctagagatcctaagtggcaggaaagctattgacatgcagtttgaggaaggaaacattgttgaatgggcagtaccattgatcaaagctggagacatttctgcccttcttgatcctgtcttatctcctccctctgatcttgaggctctcaagaagatcgctgctgtggcatgcaaGTgtgtcagaatgcgagccaaagaccgcccttccatggataaggtaacaacagctctagagcgtgcccttgcactgctgatgggtagcccgtgcattgagcaacctattctgccaactgaggttgttcttgggagtagcaggatgcacaagaaggtatcgcagaggtcatctaaccattcgtgctccgagaatgatctcgttgacggggacgatcagcggattgagtacagagcaccatcttggataacatttccaagtgtgacttcatctcagaggaggaaatcctcggcatctgaagctgacatggatggacgaacaaccacagatggaaggaacgtcgggagcagcataggtgatggattgcggtcgctggaggaagaaatcagcccggcctcaccgcaggaaaacctgtacttgcagcacaacttctga

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Protein seq

MASIAVSYGEDGPVFCGLNSDGSHLVTCFGADASVVYGAPSRIPFVGVTAGDGFACGLLLDTNQPYCWGSNSYVKIGVPQPMVEGAMYSELSAGDNHLCALRTSVKGFHSVNGDTSVIDCWGYNMTATHTVTGAVSAISAGSVFNCGLFARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAGGYHVCGVLENAQVFCWGRSLEMQQMSTPSSTDDGDVNIVPMDAMVSVVGGRFHACGIRSLDHQVACWGFTLQNSTLAPKGLRVYAIVAGDYFTCGVPAETSLKPMCWGHSGPLALPMAVSPGICVSDSCSHGYYEYANHGEVGSGSKTCKPANSRLCLPCSVGCPDDSYESSPCNATADRVCQFDCSKCASDECVSFCLSQKRTKNRKFMAFQLRIFVAEIAFAVILVFSVTAIACLYVRYKLRHCQCSKNELRLAKNTTYSFRKDNMKIQPDVEDLKIRRAQEFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHTELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGKDPNLKKRLNWARRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEDHNARVADFGLSILGPADSGTPLSELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVVLLEILSGRKAIDMQFEEGNIVEWAVPLIKAGDISALLDPVLSPPSDLEALKKIAAVACKCVRMRAKDRPSMDKVTTALERALALLMGSPCIEQPILPTEVVLGSSRMHKKVSQRSSNHSCSENDLVDGDDQRIEYRAPSWITFPSVTSSQRRKSSASEADMDGRTTTDGRNVGSSIGDGLRSLEEEISPASPQENLYLQHNF

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 2.281536 3.635377

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0637800 RBH 0.064743 0.066395 2.445359
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g43670 RBH 0.043678 0.044550 0.627984
Nipponbare | IRGSP 1.0 | RAP-db Os03g0637800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0027430 RBH 0.0 3.034185 4.563582
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0027170 RBH 0.038084 0.355272 0.629599
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0027230 RBH 0.0 0.734083 5.181454
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0027260 RBH 0.0 0.073624 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0019370 SBH 0.0 0.0 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0427700 RBH 5.246077 0.4255065 4.953486
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0026800 RBH 0.0 0.0 0.372504
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0431100 RBH 5.228742 0.068913 19.232548
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0027070 RBH 0.026618 0.039171 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0027100 RBH 0.037113 0.998033 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0027200 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0026920 RBH 0.290826 0.0 0.233086
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0026890 RBH 0.0 1.785133 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G026890 RBH 0.0 0.983654 3.287374
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0026890 RBH 0.130923 0.0 1.280196
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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