Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0027230 | OGI:03070010 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:25432530-25435556 | ||||||||
| Gene Symbol | MIS2, OsCR4, CR4, OsMIS2 | ||||||||||
| DNA seq | atggcgtccatcgccgtgtcctacggcgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgcttcggcgcggatgcctccgttgtgtacggtgcccccagcaggatcccgttcgtaggggttactgcgggggatgggtttgcctgtggcctattgctcgacaccaatcagccttactgctgggggagcaactcctatgtcaagattggtgtgccgcagccgatggtcgagggagccatgtactcggagctcagtgcaggagacaaccacctttgtgccctacgaacatctgtcaaggggtttcacagcgtgaatggagatacatcggtgattgattgctggggatacaacatgaccgccacacataccgtcaccggagctgtatcggccatttcagctggttctgtgttcaattgtggcttatttgcacggaacaggacggttttctgctggggcgatgaatcggttagtggtgtcattgggctagctccgaggaatgtgcggttccagtctataggagcaggtggttaccatgtctgcggggtgctggagaatgcgcaggtattctgctggggtaggagcttggagatgcagcagatgtcaacacccagttctactgatgatggtgatgtgaacatagttccgatggatgcaatggtctccgtggtcggtgggcggttccatgcttgtggcatcaggagtcttgatcaccaagtggcttgctggggcttcacacttcagaacagtacacttgcaccaaaagggctcagagtttatgcaattgtggctggagattacttcacttgtggggtgccggccgagacatcgttgaagccaatgtgctgggggcatagtggcccattagcactaccaatggcggtatcccctgggatttgtgtatctgattcatgcagccatggctactatgaatacgcaaaccatggtgaagttggcagtggtagcaagacatgtaaacctgcaaattctagactctgcttgccctgcagtgttggttgcccagatgactcatatgagtcatcaccttgcaatgccacagctgaccgtgtttgccagtttgattgctcaaagtgtgcctcagatgagtgcgtgtcattttgtttgtcccagaaacggaccaagaaccgcaagttcatggcttttcagctgcgtatttttgtggcagagattgcatttgccgtcatattggtgttcagtgtgaccgctattgcttgcctgtatgtccggtacaaacttcgacattgccagtgttcaaagaatgagttgaggctggcaaagaatacaacatattctttccggaaggacaacatgaagattcagcctgatgtagaggacttgaagatcaggagagctcaggaattctcatacgaggagttagagcaagcaacagggggcttctcagaggattcacaagttggcaaaggcagcttttcatgtgtgttcaagggcattctgagggatggtacagttgttgccgtgaagcgtgcaattaaggcatcagatgtgaagaagagctcaaaagagttccataccgagcttgacctcctctccaggctcaaccatgcgcacttgctgaacctgcttggctattgtgaggatggcagcgagaggctcttggtttatgagttcatggctcatggatccctctatcagcatcttcatggcaaggatccgaacttgaagaagagactgaattgggccaggcgggtcactattgctgtccaagctgctcgggggatcgagtacttgcatggctatgcttgcccaccagtaattcaccgagacatcaagtcctcaaacatactgatagatgaggatcacaatgcgcgtgtcgctgactttggtctatctatattgggcccagcagatagtggtaccccactatcagagctgcctgcagggacacttggctaccttgatcctgagtactaccgtctgcattacttgacaacaaaatctgatgtgtatagcttcggagttgttcttctagagatcctaagtggcaggaaagctattgacatgcagtttgaggaaggaaacattgttgaatgggcagtaccattgatcaaagctggagacatttctgcccttcttgatcctgtcttatctcctccctctgatcttgaggctctcaagaagatcgctgctgtggcatgcaagtgtgtcagaatgcgagccaaagaccgcccttccatggataaggtaacaacagctctagagcgtgcccttgcactgctgatgggtagcccgtgcattgagcaacctattctgccaactgaggttgttcttgggagtagcaggatgcacaagaaggtatcgcagaggtcatctaaccattcgtgctccgagaatgatctcgttgacggggatgatcagcggattgagtacagagcaccatcttggataacatttccaagtgtgacttcatctcagaggaggaaatcctcggcatctgaagctgacatggatggacgaacaaccacagatggaaggaacgttgggagcagcataggtgatggattgcggtcgctggaggaagaaattagcccggcctcaccgcaggaaaacctgtacttgcagcacaacttctgatgaaatgtcaagaacagttgaaaattcaggcaactgtctgctgtttatggtcagcattgtgaattcagccaatgtgacctgccgttgctatattggaaattgcattgaaatgtttataaatccaatggtacctggccatctaaaagggagagagaactagctatagagagcactggaagaaattttagcagccggaggcatttctttgtagattattttaaatttttttggctctctttcctgatgttatttatatgtggatggtaacatttgatggatgctcatctgtagcttacagatctgtaccctaaacatcttttgcatgtctagtcttgctttttcctgcaaatttcaatgctgtatgccaatcaaaatgcaacttttaggttccccatt
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| CDS seq | atggcgtccatcgccgtgtcctacggcgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgcttcggcgcggatgcctccgttgtgtacggtgcccccagcaggatcccgttcgtaggggttactgcgggggatgggtttgcctgtggcctattgctcgacaccaatcagccttactgctgggggagcaactcctatgtcaagattggtgtgccgcagccgatggtcgagggagccatgtactcggagctcagtgcaggagacaaccacctttgtgccctacgaacatctgtcaaggggtttcacagcgtgaatggagatacatcggtgattgattgctggggatacaacatgaccgccacacataccgtcaccggagctgtatcggccatttcagctggttctgtgttcaattgtggcttatttgcacggaacaggacggttttctgctggggcgatgaatcggttagtggtgtcattgggctagctccgaggaatgtgcggttccagtctataggagcaggtggttaccatgtctgcggggtgctggagaatgcgcaggtattctgctggggtaggagcttggagatgcagcagatgtcaacacccagttctactgatgatggtgatgtgaacatagttccgatggatgcaatggtctccgtggtcggtgggcggttccatgcttgtggcatcaggagtcttgatcaccaagtggcttgctggggcttcacacttcagaacagtacacttgcaccaaaagggctcagagtttatgcaattgtggctggagattacttcacttgtggggtgccggccgagacatcgttgaagccaatgtgctgggggcatagtggcccattagcactaccaatggcggtatcccctgggatttgtgtatctgattcatgcagccatggctactatgaatacgcaaaccatggtgaagttggcagtggtagcaagacatgtaaacctgcaaattctagactctgcttgccctgcagtgttggttgcccagatgactcatatgagtcatcaccttgcaatgccacagctgaccgtgtttgccagtttgattgctcaaagtgtgcctcagatgagtgcgtgtcattttgtttgtcccagaaacggaccaagaaccgcaagttcatggcttttcagctgcgtatttttgtggcagagattgcatttgccgtcatattggtgttcagtgtgaccgctattgcttgcctgtatgtccggtacaaacttcgacattgccagtgttcaaagaatgagttgaggctggcaaagaatacaacatattctttccggaaggacaacatgaagattcagcctgatgtagaggacttgaagatcaggagagctcaggaattctcatacgaggagttagagcaagcaacagggggcttctcagaggattcacaagttggcaaaggcagcttttcatgtgtgttcaagggcattctgagggatggtacagttgttgccgtgaagcgtgcaattaaggcatcagatgtgaagaagagctcaaaagagttccataccgagcttgacctcctctccaggctcaaccatgcgcacttgctgaacctgcttggctattgtgaggatggcagcgagaggctcttggtttatgagttcatggctcatggatccctctatcagcatcttcatggcaaggatccgaacttgaagaagagactgaattgggccaggcgggtcactattgctgtccaagctgctcgggggatcgagtacttgcatggctatgcttgcccaccagtaattcaccgagacatcaagtcctcaaacatactgatagatgaggatcacaatgcgcgtgtcgctgactttggtctatctatattgggcccagcagatagtggtaccccactatcagagctgcctgcagggacacttggctaccttgatcctgagtactaccgtctgcattacttgacaacaaaatctgatgtgtatagcttcggagttgttcttctagagatcctaagtggcaggaaagctattgacatgcagtttgaggaaggaaacattgttgaatgggcagtaccattgatcaaagctggagacatttctgcccttcttgatcctgtcttatctcctccctctgatcttgaggctctcaagaagatcgctgctgtggcatgcaagtgtgtcagaatgcgagccaaagaccgcccttccatggataaggtaacaacagctctagagcgtgcccttgcactgctgatgggtagcccgtgcattgagcaacctattctgccaactgaggttgttcttgggagtagcaggatgcacaagaaggtatcgcagaggtcatctaaccattcgtgctccgagaatgatctcgttgacggggatgatcagcggattgagtacagagcaccatcttggataacatttccaagtgtgacttcatctcagaggaggaaatcctcggcatctgaagctgacatggatggacgaacaaccacagatggaaggaacgttgggagcagcataggtgatggattgcggtcgctggaggaagaaattagcccggcctcaccgcaggaaaacctgtacttgcagcacaacttctga
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| Protein seq | MASIAVSYGEDGPVFCGLNSDGSHLVTCFGADASVVYGAPSRIPFVGVTAGDGFACGLLLDTNQPYCWGSNSYVKIGVPQPMVEGAMYSELSAGDNHLCALRTSVKGFHSVNGDTSVIDCWGYNMTATHTVTGAVSAISAGSVFNCGLFARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAGGYHVCGVLENAQVFCWGRSLEMQQMSTPSSTDDGDVNIVPMDAMVSVVGGRFHACGIRSLDHQVACWGFTLQNSTLAPKGLRVYAIVAGDYFTCGVPAETSLKPMCWGHSGPLALPMAVSPGICVSDSCSHGYYEYANHGEVGSGSKTCKPANSRLCLPCSVGCPDDSYESSPCNATADRVCQFDCSKCASDECVSFCLSQKRTKNRKFMAFQLRIFVAEIAFAVILVFSVTAIACLYVRYKLRHCQCSKNELRLAKNTTYSFRKDNMKIQPDVEDLKIRRAQEFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHTELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGKDPNLKKRLNWARRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEDHNARVADFGLSILGPADSGTPLSELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVVLLEILSGRKAIDMQFEEGNIVEWAVPLIKAGDISALLDPVLSPPSDLEALKKIAAVACKCVRMRAKDRPSMDKVTTALERALALLMGSPCIEQPILPTEVVLGSSRMHKKVSQRSSNHSCSENDLVDGDDQRIEYRAPSWITFPSVTSSQRRKSSASEADMDGRTTTDGRNVGSSIGDGLRSLEEEISPASPQENLYLQHNF |
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| Function | Serine/threonine-protein kinase-like protein CR4 [UniProtKB/Swiss-Prot:Q75J39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0027230 | OsCMeo_03g0027230.01 | Chr03 | 25432530 | 25435556 | + | NAM | ||
| CDS seq | atggcgtccatcgccgtgtcctacggcgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgcttcggcgcggatgcctccgttgtgtacggtgcccccagcaggatcccgttcgtaggggttactgcgggggatgggtttgcctgtggcctattgctcgacaccaatcagccttactgctgggggagcaactcctatgtcaagattggtgtgccgcagccgatggtcgagggagccatgtactcggagctcagtgcaggagacaaccacctttgtgccctacgaacatctgtcaaggggtttcacagcgtgaatggagatacatcggtgattgattgctggggatacaacatgaccgccacacataccgtcaccggagctgtatcggccatttcagctggttctgtgttcaattgtggcttatttgcacggaacaggacggttttctgctggggcgatgaatcggttagtggtgtcattgggctagctccgaggaatgtgcggttccagtctataggagcaggtggttaccatgtctgcggggtgctggagaatgcgcaggtattctgctggggtaggagcttggagatgcagcagatgtcaacacccagttctactgatgatggtgatgtgaacatagttccgatggatgcaatggtctccgtggtcggtgggcggttccatgcttgtggcatcaggagtcttgatcaccaagtggcttgctggggcttcacacttcagaacagtacacttgcaccaaaagggctcagagtttatgcaattgtggctggagattacttcacttgtggggtgccggccgagacatcgttgaagccaatgtgctgggggcatagtggcccattagcactaccaatggcggtatcccctgggatttgtgtatctgattcatgcagccatggctactatgaatacgcaaaccatggtgaagttggcagtggtagcaagacatgtaaacctgcaaattctagactctgcttgccctgcagtgttggttgcccagatgactcatatgagtcatcaccttgcaatgccacagctgaccgtgtttgccagtttgattgctcaaagtgtgcctcagatgagtgcgtgtcattttgtttgtcccagaaacggaccaagaaccgcaagttcatggcttttcagctgcgtatttttgtggcagagattgcatttgccgtcatattggtgttcagtgtgaccgctattgcttgcctgtatgtccggtacaaacttcgacattgccagtgttcaaagaatgagttgaggctggcaaagaatacaacatattctttccggaaggacaacatgaagattcagcctgatgtagaggacttgaagatcaggagagctcaggaattctcatacgaggagttagagcaagcaacagggggcttctcagaggattcacaagttggcaaaggcagcttttcatgtgtgttcaagggcattctgagggatggtacagttgttgccgtgaagcgtgcaattaaggcatcagatgtgaagaagagctcaaaagagttccataccgagcttgacctcctctccaggctcaaccatgcgcacttgctgaacctgcttggctattgtgaggatggcagcgagaggctcttggtttatgagttcatggctcatggatccctctatcagcatcttcatggcaaggatccgaacttgaagaagagactgaattgggccaggcgggtcactattgctgtccaagctgctcgggggatcgagtacttgcatggctatgcttgcccaccagtaattcaccgagacatcaagtcctcaaacatactgatagatgaggatcacaatgcgcgtgtcgctgactttggtctatctatattgggcccagcagatagtggtaccccactatcagagctgcctgcagggacacttggctaccttgatcctgagtactaccgtctgcattacttgacaacaaaatctgatgtgtatagcttcggagttgttcttctagagatcctaagtggcaggaaagctattgacatgcagtttgaggaaggaaacattgttgaatgggcagtaccattgatcaaagctggagacatttctgcccttcttgatcctgtcttatctcctccctctgatcttgaggctctcaagaagatcgctgctgtggcatgcaagtgtgtcagaatgcgagccaaagaccgcccttccatggataaggtaacaacagctctagagcgtgcccttgcactgctgatgggtagcccgtgcattgagcaacctattctgccaactgaggttgttcttgggagtagcaggatgcacaagaaggtatcgcagaggtcatctaaccattcgtgctccgagaatgatctcgttgacggggatgatcagcggattgagtacagagcaccatcttggataacatttccaagtgtgacttcatctcagaggaggaaatcctcggcatctgaagctgacatggatggacgaacaaccacagatggaaggaacgttgggagcagcataggtgatggattgcggtcgctggaggaagaaattagcccggcctcaccgcaggaaaacctgtacttgcagcacaacttctga
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| Protein seq | MASIAVSYGEDGPVFCGLNSDGSHLVTCFGADASVVYGAPSRIPFVGVTAGDGFACGLLLDTNQPYCWGSNSYVKIGVPQPMVEGAMYSELSAGDNHLCALRTSVKGFHSVNGDTSVIDCWGYNMTATHTVTGAVSAISAGSVFNCGLFARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAGGYHVCGVLENAQVFCWGRSLEMQQMSTPSSTDDGDVNIVPMDAMVSVVGGRFHACGIRSLDHQVACWGFTLQNSTLAPKGLRVYAIVAGDYFTCGVPAETSLKPMCWGHSGPLALPMAVSPGICVSDSCSHGYYEYANHGEVGSGSKTCKPANSRLCLPCSVGCPDDSYESSPCNATADRVCQFDCSKCASDECVSFCLSQKRTKNRKFMAFQLRIFVAEIAFAVILVFSVTAIACLYVRYKLRHCQCSKNELRLAKNTTYSFRKDNMKIQPDVEDLKIRRAQEFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHTELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGKDPNLKKRLNWARRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEDHNARVADFGLSILGPADSGTPLSELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVVLLEILSGRKAIDMQFEEGNIVEWAVPLIKAGDISALLDPVLSPPSDLEALKKIAAVACKCVRMRAKDRPSMDKVTTALERALALLMGSPCIEQPILPTEVVLGSSRMHKKVSQRSSNHSCSENDLVDGDDQRIEYRAPSWITFPSVTSSQRRKSSASEADMDGRTTTDGRNVGSSIGDGLRSLEEEISPASPQENLYLQHNF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.734083 | 5.181454 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0637800 | RBH | 0.064743 | 0.066395 | 2.445359 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g43670 | RBH | 0.043678 | 0.044550 | 0.627984 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0637800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027430 | RBH | 0.0 | 3.034185 | 4.563582 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027170 | RBH | 0.038084 | 0.355272 | 0.629599 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020470 | SBH | 0.0 | 0.0 | 0.447363 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027260 | RBH | 0.0 | 0.073624 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027040 | RBH | 0.0 | 2.281536 | 3.635377 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0427700 | RBH | 5.246077 | 0.4255065 | 4.953486 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026800 | RBH | 0.0 | 0.0 | 0.372504 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0431100 | RBH | 5.228742 | 0.068913 | 19.232548 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027070 | RBH | 0.026618 | 0.039171 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027100 | RBH | 0.037113 | 0.998033 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026920 | RBH | 0.290826 | 0.0 | 0.233086 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026890 | RBH | 0.0 | 1.785133 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026890 | RBH | 0.0 | 0.983654 | 3.287374 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026890 | RBH | 0.130923 | 0.0 | 1.280196 |
