Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0029530 | OGI:02080180 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:30557951-30560586 | ||||||||
| Gene Symbol | OsDjC20 | ||||||||||
| DNA seq | tgagaagccaagaactacatctggaaactgcgtgcatgcatttcttgcagcaaaaatacattagtatacgacagaatccattgttgtgttacaaagaacagagagatgccctgccgtatccatagttgtgttaaaagaaacagctaagcatccaattggcctcaaagaaagtactgaagaagctcatggacaaataagatgtacctatagatcaatggggctccaattccctcaaatgccgggccctagaaaatgaaatcataaatactgtattcgaagtgttcacactactattaggaatcatgccatgaagtcttaagtcttaaccaatatgcaaaacaaatttagcatcaggctcaaatgaaatgctttaccattttgaagaatggtctatgccaagaccattgcaggtaagtatcatacccttaaaccttgtaaggtactcctaaaagcgagggaaagacagcaaggaaaatcaacacaaagcgtgtagaagaggaatatggaaggccaattatagaagacaccttacacgcaaagtatatcgatttaactcataacatccggaaaggtcatattcaaggcgcttagctggatcacttagaactgaaaaaacggaacataaaaaaaagtgaatcaggcaatggcgataacatttatctctaggaagtacatccatattgagatcccaaatttatctctaggaagtaaatgaggataataagatcatctgtgcctacataatggagagtggaaaatacctgtgtaggcttcattgatctcctgaaatttagctgtgacatcattatcccccttatgcttgtctggatgccacatctgtggatgaattatcagttacagtgtgttaatgtattattatttgcgtaccccgaaagaagtccaataacagcataccaaagctaatcttctataactcaatttgatggtgtcatcggatgcatcgtaatcaacctccagaactttgtaatagtcctgctattccaaatgaatataatgaataagacgtattaaaaaaaagtgtacctgtgcaagaaatagtataattgattatggacacttttcagaatatgaatggcacggtagtccatgtcacgagtacataggcggtaaagtgagtttattttggattagcatgacttattaagattaagtgcccaaatgatagctcacagcgcaggtgagttgcatattaacagagttgtaaaaaccatataataacacatattgagttcataccatagcgaagcatacaagtggcaatatacaggcttgaattgcctagcaaccccgatgtcttgtaaataaagatacactaaatcgcatgctgagtaataagttgtttggttgttttgcaccctttaaccacccacaaggccacactctattaatagatgttttatgcttgaataataattccttcacttcgtcagtagataacatttgctgtgaagaatagtacagacaaagcaacgcatctgccaagaaagtagaacctagtttgtgcaattcacagcatttgtcttagatgaataaaggacatcaaggtaaggaaattggtttaagcaaaaacaaacatcagcaatgcattgatcagcattttccaaatggctgcaaaagttcaggttaaaaaagaaacagctaacaggactcctataatattgtagggtggtgttcgacaaggagacctgacgggccgttacaatacaatggtgccacagattgaacctaaacaccagtcttcgtctcaaaccctcagtgagagggttgtactaaaaggctcaattcaccgattacagaccataggttaaatgttgatcctgtgctgctgcattaatcaagaacctagaaacatttgcgcgaggaagatgaacctaaatccaccatacggaattcggccactcggcacagttgaccatgactaaatctggccaccagccaaacaatcatatgctgtccactagcgagaccgcgggcaaagcaataccacagtagctccagtactatttgtagccatcaatcacagtatcaaaatgccccaggagaaaaaaaaggtttggtccagaaccaaccaacaaattattgggaaggcctatccacctttttcctggccacagtgaacgaagatacaagtcatcggccactccaataatagaaaacaactggttcgcgcagccgcagcacagctctcttatccttctatacaagcggcacgaccaaaaccaaatccagccatagactgaagctcaaacactcgatctctctctctcgcgcgcgcgcgggaataatacaaccggaatcgcggggggacgcgtaccttgtggggaggcttctcgcttgctccgtccatgcagcgtaacaattcatcacccccagctgatcctctcttctcgtcgtcgcctgtttcccttcctcgtgtccgccgcgcgcgttggcggcggcccggctccccgggcttggcttgggggatccgggaggaggaagatgaggggcgaatcgatcgagggcgagggcgaggccgagcgagaggccgccggagtgggtgggatcggagccggaaggagttccttgtcctctcctccctttactttatttcctatgcttttctattcccctga
More
|
||||||||||
| CDS seq | atggacggagcaagcgagaagcctccccacaagcaggactattacaaagttctggaggttgattacgatgcatccgatgacaccatcaaattgagttatagaagattagctttgatgtggcatccagacaagcataagggggataatgatgtcacagctaaatttcaggagatcaatgaagcctacacagttctaagtgatccagctaagcgccttgaatatgacctttccggatgttatgagttaaatcgatatactttgcgtgagtaccttacaaggtttaagggtatgatacttacctgcaatggtcttggcatagaccattcttcaaaatgggcccggcatttgagggaattggagccccattga |
||||||||||
| Protein seq | MDGASEKPPHKQDYYKVLEVDYDASDDTIKLSYRRLALMWHPDKHKGDNDVTAKFQEINEAYTVLSDPAKRLEYDLSGCYELNRYTLREYLTRFKGMILTCNGLGIDHSSKWARHLRELEPH |
||||||||||
| Function | Chaperone protein DnaJ [UniProtKB/Swiss-Prot:A3DF24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0029530 | OsPr106_02g0029530.02 | Chr02 | 30557973 | 30560586 | - | NAM | ||
| CDS seq | atggacggagcaagcgagaagcctccccacaagcaggactattacaaagttctggaggttgattacgatgcatccgatgacaccatcaaattgagttatagaagattagctttgatgtggcatccagacaagcataagggggataatgatgtcacagctaaatttcaggagatcaatgaagcctacacagttctaagtgatccagctaagcgccttgaatatgacctttccggatgttatgagttaaatcgatatactttgcgtgagtaccttacaaggtttaagggtatgatacttacctgcaatggtcttggcatagaccattcttcaaaatgggcccggcatttgagggaattggagccccattga
More
|
|||||||
| Protein seq | MDGASEKPPHKQDYYKVLEVDYDASDDTIKLSYRRLALMWHPDKHKGDNDVTAKFQEINEAYTVLSDPAKRLEYDLSGCYELNRYTLREYLTRFKGMILTCNGLGIDHSSKWARHLRELEPH |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0029530 | OsPr106_02g0029530.01 | Chr02 | 30557951 | 30560586 | - | NAM | ||
| CDS seq | atggacggagcaagcgagaagcctccccacaagcaggactattacaaagttctggaggttgattacgatgcatccgatgacaccatcaaattgagttatagaagattagctttgatgtggcatccagacaagcataagggggataatgatgtcacagctaaatttcaggagatcaatgaagcctacacagttctaagtgatccagctaagcgccttgaatatgacctttccggatgttatgagttaaatcgatatactttgcgtgagtaccttacaaggtttaagggtatgatacttacctgcaatggtcttggcatagaccattcttcaaaatgggcccggcatttgagggaattggagccccattga
More
|
|||||||
| Protein seq | MDGASEKPPHKQDYYKVLEVDYDASDDTIKLSYRRLALMWHPDKHKGDNDVTAKFQEINEAYTVLSDPAKRLEYDLSGCYELNRYTLREYLTRFKGMILTCNGLGIDHSSKWARHLRELEPH |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0029530 | OsPr106_02g0029530.03 | Chr02 | 30557967 | 30560581 | - | IsoSeq | ||
| CDS seq | atgaattgttacgctgcatggacggagcaagcgagaagcctccccacaaggactattacaaagttctggaggttgattacgatgcatccgatgacaccatca |
|||||||
| Protein seq | MNCYAAWTEQARSLPTRTITKFWRLITMHPMTPS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 30558943 | 30560286 | - | OsPr106_02g0029530.01,OsPr106_02g0029530.02 | OsPr106_02g0029530.03,OsPr106_02g0029530.01,OsPr106_02g0029530.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.070883 | 10.448874 | 17.620646 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0693200 | RBH | 2.067492 | 1.171909 | 7.431432 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46640 | RBH | 1.068985 | 0.690400 | 1.531570 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0693200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029790 | RBH | 1.673846 | 22.852764 | 3.094884 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029860 | RBH | 0.298202 | 3.438867 | 2.250182 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029720 | RBH | 2.682557 | 12.784140 | 11.931894 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029320 | RBH | 0.348008 | 0.406716 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022470 | SBH | 97.754585 | 43.477955 | 335.642151 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0462400 | RBH | 9.992031 | 23.512663 | 66.133669 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029330 | RBH | 0.444559 | 1.611427 | 1.420927 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0490200 | RBH | 20.1376175 | 53.315357 | 40.397045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029630 | RBH | 0.359645 | 0.225643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029370 | RBH | 0.831056 | 13.199796 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029680 | RBH | 14.799801 | 19.110928 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029520 | RBH | 2.021918 | 1.958203 | 1.607433 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029200 | RBH | 0.233332 | 9.541669 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029780 | RBH | 0.565033 | 2.103662 | 1.978731 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029550 | RBH | 1.153514 | 31.186899 | 5.721833 |
