Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0008910 | OGI:02019860 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:6540933-6545447 | ||||||||
| Gene Symbol | RLCK68, OsRLCK68 | ||||||||||
| DNA seq | cgaatgtggtatttacattctgttgcaacacacaagtacttggctagtcatagaagcaaaccaaaagttttctctggcgatgacaaagatgcgcaaaacatgatctgagaaccaaaggctgctcatcacccacttggcatcttgggcatgtcacattacatacagaaatgcattgccttaatctttcctttacatggtttaattttctcctcttaatcatctacatgctaatgattaatcacccaaactatgttgcgccattaagtaacatcatcagctcagctgcagtccacacagagcgaaggcagcagcagcagtgccttttaatcatctatacattgcagctgcaggtgcagcagccatggaggatggaggcagcagagactctgatcatggcgtggagacgtcgtcgccgccgaagctgtagggagcggagctggagcaggtggtgctggtgctgctgaccttggaggcgtcgtactcctggctgaggcagcgcagccggttgagctccggcaagatctccttcccgaggtccggccggtccttcttcctcagctcggcgcaccgcagcgccagcttggcgaacaccaaggcctcctccaccggccagtcggtcaccatcgggtcgagcacctcctggaaggtccccctctcgatggcgctctcgacgtggtgggtgagccccatgggcgacctcgccgtgatgatctgcagcagcaggatccccagtgagtagatgtcggacatggtggtcagcatcccggtctgctggtactccgggtcgatgtagcagaaggtgcccgccgtcgaggtcatccggtactgcgtggcctcggcggcggcagcggactgcgggacgaggcgggcgaggccgacgtcgctgatcttgctgacgaagttgtggtcgaggaggatgttggccggcttcaggtcgcggtggaccagcggctcgggcttcgcctggtggaggaagaggaggccggtggcgatgtcggcggcgatgcggaaccggatgttccaggggatcggcagcgtcttcccccgccggcacagccggtcctccaggctgccgtagtccatgtactcgtacaccaggcacccgtactccgggcatgctcccagcagcagcaccatgtttggatgcctcatgcagctaagcacttctatctgaacaacaaaataaataaattacaacttattcatcaccatgcagtttattaattactccctctgtttcagattatgagtcgttttgactttggttaaagtcaaactgttgtaagtttgactaatttattagtctataattagttctattaaatctataattgaatatatttttataatatatttgtcttgggttgaaaatattattattaattttctgtaaatttggtcaaacttgaagcagtttgactttgaccaaagtcaaaacgacttataatatgaaacggagggagtaattagcttgatcatgacatgactatcttttgcataattgacatcatatatttgatctgcccaaaaaaaagaagaaactctcactacatgcagtttatgagcttggttataactatcgtttgcataattgacatgcagataatttagatatttgaatggtaaatatgggtaggaagataaaatgtcttcaaaaacatatgattgaaataatgatgttctgaactaactcattgtcagatcattaaatccttcaaaaacaaaaaagagaaaatttgcttcctgatggtgagagaaaatattgcattcagttttagtttggttgtactaatatgttaactcaaaacaaccctgaatatactgaaaagatgaagaatttactagatactcctatattagatttacctcttgctgaaactgtttcctcccttgtgatgcatctggccttaagattttaatggcgacattagtatgatccatgacagctttatacaccggcccatatccaccttcccctatcttgagtgccttgtcaaacttatgggtggcagcttcaatgtcatcaatggaatacctcctgtaccttaaatcagtgttgttcattgcttctgttgctctcttcctctcctcggcttcgcgcttcgccttccactctgctctcagtctcttctgagcctccagctctgcaattctctgtgcagcctctgctgcttccagtgcggctctgcactttgccttctccatttggaccagagcaagggcttcctcttcagcattcctgagttcttggtacttcttggactcttccatcttcatctggtgcatctgagcagcctgctgatttgatcattattcactattgtttcaaaatatttcagataatagttgaaatttacagcgacatagaagtgggcagaccttctgtttagcatcaattgcttccttgcatgcggagttgtacatttccattgtctgcttcagctctagtctcagccgtctcatttccgtttcgacatccttctgaatttcaaacgacacaaaaataagagttgatcaaagtccaatactctaaaagattccagatcaccaagattttgatcaactgcagcaaaactgatgttgccggtgtgcttgcttaccccagctgagcttaggctttcgatggacattgatgcggaaagcgaaagctccaaagaatcgccgaagtccatcgatggcaactccaagctcaaaggaaaatcaacatcatctgaaaaggagctacgggttaccgagggccttggaggagctatgaagtcgatatagtcgtcgaaatcctttgggggtgctgatctagctccagagagaggcctttccctggttggagcttttgcaaagccagatagtcggtccaccgatggtctgtttgcctttggagatgattgattggaaatcttcttccagtctcctcttgatctgttcagcaaacccggaacatgatttcgtattatgttagcaagttcagaaggtaaaccgagtgacatgactgataaacatatctatatctacttatttgcatacaggtgtttagattttagaatctgattacttcaaaccattttgcaatgtaattattgagtgaagcgattattccttatcgacaaacttacctcggatatccatcagattctatgcttgactgtgagtactgtttgggagggagagtggtaaagggtgctggggctttggctgccttgacttggattgccttccctttgtggatgacatgcactgtgcagtaatcaggcaccatcttcatcaagcatgttggcacatcaggatttctgaactttctgcaggacacgaggttcatgactgtgttcagttattacaggttatcaagggattggggaatggtgcacagcacagccatggaggaatgaacagtcatgcacctgatgaatgtgttcctcgtcgacgccccgacgacgatgtcggtgatggcgttgctagtggcatactcgactattgctttggagatatcactgccatccaagatcacttccttcaattgcatctgcagtttgcaatgtaagtatttcttgagcttattttgttccatttgattttgttattgtcatcttattctagtagtgaaaaaaaaacatgtatctgataagatagtagtatatatattggggcaattatatattctattggcactcacccctttacgagcacaatagcctctgtatgagatgaacatctgttgcatctctgcatccgctcctgcttcagctgcagcatgaagaaatttgttgatgaaattaaataaaccagggtaaattggagaaaaatacataaattagctaccggaatctaacaaactatatgcagaattttgaaagaatgcgtattatcgacaaaatcatgcccattttgtcgtgtctgaattttccatcttcctacaaacttccattgcatgatggcaaaatgcgtaatattagctaacccatgaaatccaaacaactacatgcatttcaaataaaatgtgcattgtcgacaaaatcatgcccattttgttgtctctgaattcttcatcttcctgcaaactttcactgcatgatggcacaatgcaaaccatgcacattctcttccacatccaattattgcatctctccaattcgaccaagaaaaaaagtagtgtttttttcctctcactgatatctcttgcattgcaagattagctttggttcatgcagattcatggagcattaccattttgctgtggcttgacatggacgagctggagaacgctgcccctggcgaggagccggtccaccgcccacttgaccgcctgctgggtgttcttgtcccggtcgacggcgaccaccgtggagctgtccctggcctcgctgtccccgccgccgtgcgaagacgccgaggaggagaaggccgacaggtacatgctccccgcacctcgccggcaaaaagatcgtcggagtcggagaaggagaggaagagacaaaaaaaaaaaaaggattcttttgcttctcctcctctccctcttcttcc
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| CDS seq | atgcaacagatgttcatctcatacagaggctattgtgctcgtaaagggatgcaattgaaggaagtgatcttggatggcagtgatatctccaaagcaatagtcgagtatgccactagcaacgccatcaccgacatcgtcgtcggggcgtcgacgaggaacacattcatcagaaagttcagaaatcctgatgtgccaacatgcttgatgaagatggtgcctgattactgcacagtgcatgtcatccacaaagggaaggcaatccaagtcaaggcagccaaagccccagcaccctttaccactctccctcccaaacagtactcacagtcaagcatagaatctgatggatatccgagatcaagaggagactggaagaagatttccaatcaatcatctccaaaggcaaacagaccatcggtggaccgactatctggctttgcaaaagctccaaccagggaaaggcctctctctggagctagatcagcacccccaaaggatttcgacgactatatcgacttcatagctcctccaaggccctcggtaacccgtagctccttttcagatgatgttgattttcctttgagcttggagttgccatcgatggacttcggcgattctttggagctttcgctttccgcatcaatgtccatcgaaagcctaagctcagctgggaaggatgtcgaaacggaaatgagacggctgagactagagctgaagcagacaatggaaatgtacaactccgcatgcaaggaagcaattgatgctaaacagaaggctgctcagatgcaccagatgaagatggaagagtccaagaagtaccaagaactcaggaatgctgaagaggaagcccttgctctggtccaaatggagaaggcaaagtgcagagccgcactggaagcagcagaggctgcacagagaattgcagagctggaggctcagaagagactgagagcagagtggaaggcgaagcgcgaagccgaggagaggaagagagcaacagaagcaatgaacaacactgatttaaggtacaggaggtattccattgatgacattgaagctgccacccataagtttgacaaggcactcaagataggggaaggtggatatgggccggtgtataaagctgtcatggatcatactaatgtcgccattaaaatcttaaggccagatgcatcacaagggaggaaacagtttcagcaagagtacgggtgcctggtgtacgagtacatggactacggcagcctggaggaccggctgtgccggcgggggaagacgctgccgatcccctggaacatccggttccgcatcgccgccgacatcgccaccggcctcctcttcctccaccaggcgaagcccgagccgctggtccaccgcgacctgaagccggccaacatcctcctcgaccacaacttcgtcagcaagatcagcgacgtcggcctcgcccgcctcgtcccgcagtccgctgccgccgccgaggccacgcagtaccggatgacctcgacggcgggcaccttctgctacatcgacccggagtaccagcagaccgggatgctgaccaccatgtccgacatctactcactggggatcctgctgctgcagatcatcacggcgaggtcgcccatggggctcacccaccacgtcgagagcgccatcgagagggggaccttccaggaggtgctcgacccgatggtgaccgactggccggtggaggaggccttggtgttcgccaagctggcgctgcggtgcgccgagctgaggaagaaggaccggccggacctcgggaaggagatcttgccggagctcaaccggctgcgctgcctcagccaggagtacgacgcctccaaggtcagcagcaccagcaccacctgctccagctccgctccctacagcttcggcggcgacgacgtctccacgccatga
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| Protein seq | MQQMFISYRGYCARKGMQLKEVILDGSDISKAIVEYATSNAITDIVVGASTRNTFIRKFRNPDVPTCLMKMVPDYCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQYSQSSIESDGYPRSRGDWKKISNQSSPKANRPSVDRLSGFAKAPTRERPLSGARSAPPKDFDDYIDFIAPPRPSVTRSSFSDDVDFPLSLELPSMDFGDSLELSLSASMSIESLSSAGKDVETEMRRLRLELKQTMEMYNSACKEAIDAKQKAAQMHQMKMEESKKYQELRNAEEEALALVQMEKAKCRAALEAAEAAQRIAELEAQKRLRAEWKAKREAEERKRATEAMNNTDLRYRRYSIDDIEAATHKFDKALKIGEGGYGPVYKAVMDHTNVAIKILRPDASQGRKQFQQEYGCLVYEYMDYGSLEDRLCRRGKTLPIPWNIRFRIAADIATGLLFLHQAKPEPLVHRDLKPANILLDHNFVSKISDVGLARLVPQSAAAAEATQYRMTSTAGTFCYIDPEYQQTGMLTTMSDIYSLGILLLQIITARSPMGLTHHVESAIERGTFQEVLDPMVTDWPVEEALVFAKLALRCAELRKKDRPDLGKEILPELNRLRCLSQEYDASKVSSTSTTCSSSAPYSFGGDDVSTP |
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| Function | U-box domain-containing protein 35 [UniProtKB/Swiss-Prot:Q9SW11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0008910 | OsPr106_02g0008910.01 | Chr02 | 6540933 | 6545325 | - | NAM | ||
| CDS seq | atgcaacagatgttcatctcatacagaggctattgtgctcgtaaagggatgcaattgaaggaagtgatcttggatggcagtgatatctccaaagcaatagtcgagtatgccactagcaacgccatcaccgacatcgtcgtcggggcgtcgacgaggaacacattcatcagaaagttcagaaatcctgatgtgccaacatgcttgatgaagatggtgcctgattactgcacagtgcatgtcatccacaaagggaaggcaatccaagtcaaggcagccaaagccccagcaccctttaccactctccctcccaaacagtactcacagtcaagcatagaatctgatggatatccgagatcaagaggagactggaagaagatttccaatcaatcatctccaaaggcaaacagaccatcggtggaccgactatctggctttgcaaaagctccaaccagggaaaggcctctctctggagctagatcagcacccccaaaggatttcgacgactatatcgacttcatagctcctccaaggccctcggtaacccgtagctccttttcagatgatgttgattttcctttgagcttggagttgccatcgatggacttcggcgattctttggagctttcgctttccgcatcaatgtccatcgaaagcctaagctcagctgggaaggatgtcgaaacggaaatgagacggctgagactagagctgaagcagacaatggaaatgtacaactccgcatgcaaggaagcaattgatgctaaacagaaggctgctcagatgcaccagatgaagatggaagagtccaagaagtaccaagaactcaggaatgctgaagaggaagcccttgctctggtccaaatggagaaggcaaagtgcagagccgcactggaagcagcagaggctgcacagagaattgcagagctggaggctcagaagagactgagagcagagtggaaggcgaagcgcgaagccgaggagaggaagagagcaacagaagcaatgaacaacactgatttaaggtacaggaggtattccattgatgacattgaagctgccacccataagtttgacaaggcactcaagataggggaaggtggatatgggccggtgtataaagctgtcatggatcatactaatgtcgccattaaaatcttaaggccagatgcatcacaagggaggaaacagtttcagcaagagtacgggtgcctggtgtacgagtacatggactacggcagcctggaggaccggctgtgccggcgggggaagacgctgccgatcccctggaacatccggttccgcatcgccgccgacatcgccaccggcctcctcttcctccaccaggcgaagcccgagccgctggtccaccgcgacctgaagccggccaacatcctcctcgaccacaacttcgtcagcaagatcagcgacgtcggcctcgcccgcctcgtcccgcagtccgctgccgccgccgaggccacgcagtaccggatgacctcgacggcgggcaccttctgctacatcgacccggagtaccagcagaccgggatgctgaccaccatgtccgacatctactcactggggatcctgctgctgcagatcatcacggcgaggtcgcccatggggctcacccaccacgtcgagagcgccatcgagagggggaccttccaggaggtgctcgacccgatggtgaccgactggccggtggaggaggccttggtgttcgccaagctggcgctgcggtgcgccgagctgaggaagaaggaccggccggacctcgggaaggagatcttgccggagctcaaccggctgcgctgcctcagccaggagtacgacgcctccaaggtcagcagcaccagcaccacctgctccagctccgctccctacagcttcggcggcgacgacgtctccacgccatga
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| Protein seq | MQQMFISYRGYCARKGMQLKEVILDGSDISKAIVEYATSNAITDIVVGASTRNTFIRKFRNPDVPTCLMKMVPDYCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQYSQSSIESDGYPRSRGDWKKISNQSSPKANRPSVDRLSGFAKAPTRERPLSGARSAPPKDFDDYIDFIAPPRPSVTRSSFSDDVDFPLSLELPSMDFGDSLELSLSASMSIESLSSAGKDVETEMRRLRLELKQTMEMYNSACKEAIDAKQKAAQMHQMKMEESKKYQELRNAEEEALALVQMEKAKCRAALEAAEAAQRIAELEAQKRLRAEWKAKREAEERKRATEAMNNTDLRYRRYSIDDIEAATHKFDKALKIGEGGYGPVYKAVMDHTNVAIKILRPDASQGRKQFQQEYGCLVYEYMDYGSLEDRLCRRGKTLPIPWNIRFRIAADIATGLLFLHQAKPEPLVHRDLKPANILLDHNFVSKISDVGLARLVPQSAAAAEATQYRMTSTAGTFCYIDPEYQQTGMLTTMSDIYSLGILLLQIITARSPMGLTHHVESAIERGTFQEVLDPMVTDWPVEEALVFAKLALRCAELRKKDRPDLGKEILPELNRLRCLSQEYDASKVSSTSTTCSSSAPYSFGGDDVSTP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0008910 | OsPr106_02g0008910.02 | Chr02 | 6541037 | 6545447 | - | IsoSeq | ||
| CDS seq | ggaagaagagggagaggaggagaagcaaaagaatcctttttttttttttgtctcttcctctccttctccgactccgacgatctttttgccggcgaggtgcggggagcatgtacctgtcggccttctcctcctcggcgtcttcgcacggcggcggggacagcgaggccagggacagctccacggtggtcgccgtcgaccgggacaagaacacccagcaggcggtcaagtgggcggtggaccggctcctcgccaggggcagcgttctccagctcgtccatgtcaagccacagcaaaatgctgaagcaggagcggatgcagagatgcaacagatgttcatctcatacagaggctattgtgctcgtaaagggatgc
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| Protein seq | GRRGRGGEAKESFFFFCLFLSFSDSDDLFAGEVRGACTCRPSPPRRLRTAAGTARPGTAPRWSPSTGTRTPSRRSSGRWTGSSPGAAFSSSSMSSHSKMLKQERMQRCNRCSSHTEAIVLVKGC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 6542039 | 6542799 | - | OsPr106_02g0008910.02 | OsPr106_02g0008910.01,OsPr106_02g0008910.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.163383 | 0.000000 | 9.755577 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0218400 | RBH | 0.585358 | 0.085603 | 3.763386 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12660 | RBH | 0.619342 | 0.382108 | 0.950125 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0218400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009020 | RBH | 0.091893 | 0.000000 | 4.275642 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009110 | RBH | 0.037356 | 0.0 | 5.285417 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008930 | RBH | 0.000000 | 0.0 | 8.696533 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008770 | RBH | 0.136219 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020410 | SBH | 2.468085 | 7.587904 | 6.294978 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0111800 | RBH | 2.320686 | 3.8051245 | 3.9955205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008740 | RBH | 0.205231 | 0.000000 | 4.516614 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0115100 | RBH | 2.427768 | 5.002733 | 5.909601 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009190 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008830 | RBH | 0.072815 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009130 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009120 | RBH | 0.337171 | 0.190601 | 1.150869 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008870 | RBH | 0.307069 | 1.242937 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009020 | RBH | 0.000000 | 0.000000 | 2.307817 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008900 | RBH | 0.256103 | 2.991962 | 11.806407 |
